Temat: "Sequence Analysis, Protein" - OpacWWW

Skocz do pozycji: 1 1.

Tytuł :: Substitution scoring matrices for proteins - An overview.
Autorzy :: Trivedi R; Laboratory of Computational Biology, Centre for DNA Fingerprinting and Diagnostics, Uppal, Hyderabad, Telangana, India.; Graduate School, Manipal Academy of Higher Education, Manipal, Karnataka, India.
Nagarajaram HA; Laboratory of Computational Biology, Department of Systems and Computational Biology, School of Life Sciences, University of Hyderabad, Hyderabad, Telangana, India.; Centre for Modelling, Simulation and Design, University of Hyderabad, Hyderabad, Telangana, India.; Pokaż więcej
Źródło :: Protein science : a publication of the Protein Society [Protein Sci] 2020 Nov; Vol. 29 (11), pp. 2150-2163. Date of Electronic Publication: 2020 Oct 12.
Typ publikacji :: Journal Article; Review
MeSH Terms :: Algorithms*
Databases, Protein*
Evolution, Molecular*
Membrane Proteins*
Sequence Alignment*
Sequence Analysis, Protein*
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 2 2.

Tytuł :: Structural characterization and computational analysis of PDZ domains in Monosiga brevicollis.
Autorzy :: Gao M; Department of Chemistry, Western Washington University, Bellingham, Washington, USA.
Mackley IGP; Department of Chemistry, Western Washington University, Bellingham, Washington, USA.
Mesbahi-Vasey S; Institute for Protein Innovation, Boston, Massachusetts, USA.; Division of Hematology/Oncology, Boston Children's Hospital, Boston, Massachusetts, USA.; Department of Pediatrics, Harvard Medical School, Boston, Massachusetts, USA.
Bamonte HA; Department of Chemistry, Western Washington University, Bellingham, Washington, USA.
Struyvenberg SA; Department of Chemistry, Western Washington University, Bellingham, Washington, USA.
Landolt L; Department of Chemistry, Western Washington University, Bellingham, Washington, USA.
Pederson NJ; Department of Chemistry, Western Washington University, Bellingham, Washington, USA.
Williams LI; Department of Chemistry, Western Washington University, Bellingham, Washington, USA.
Bahl CD; Institute for Protein Innovation, Boston, Massachusetts, USA.; Division of Hematology/Oncology, Boston Children's Hospital, Boston, Massachusetts, USA.; Department of Pediatrics, Harvard Medical School, Boston, Massachusetts, USA.
Brooks L 3rd; Department of Biology, Western Washington University, Bellingham, Washington, USA.
Amacher JF; Department of Chemistry, Western Washington University, Bellingham, Washington, USA.; Pokaż więcej
Źródło :: Protein science : a publication of the Protein Society [Protein Sci] 2020 Nov; Vol. 29 (11), pp. 2226-2244. Date of Electronic Publication: 2020 Sep 25.
Typ publikacji :: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :: Algorithms*
Models, Molecular*
PDZ Domains*
Sequence Analysis, Protein*
Choanoflagellata/*chemistry
Protozoan Proteins/*chemistry
Choanoflagellata/genetics ; Crystallography, X-Ray ; Databases, Protein ; Protozoan Proteins/genetics
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 3 3.

Tytuł :: Comprehensive Survey and Comparative Assessment of RNA-Binding Residue Predictions with Analysis by RNA Type.
Autorzy :: Wang K; School of Mathematical Sciences and LPMC, Nankai University, Tianjin 300071, China.
Hu G; School of Statistics and Data Science, LPMC and KLMDASR, Nankai University, Tianjin 300071, China.
Wu Z; School of Mathematical Sciences and LPMC, Nankai University, Tianjin 300071, China.
Su H; School of Mathematical Sciences and LPMC, Nankai University, Tianjin 300071, China.
Yang J; School of Mathematical Sciences and LPMC, Nankai University, Tianjin 300071, China.
Kurgan L; Department of Computer Science, Virginia Commonwealth University, Richmond, VA 23284, USA.; Pokaż więcej
Źródło :: International journal of molecular sciences [Int J Mol Sci] 2020 Sep 19; Vol. 21 (18). Date of Electronic Publication: 2020 Sep 19.
Typ publikacji :: Comparative Study; Journal Article; Review
MeSH Terms :: RNA*/chemistry
RNA*/genetics
RNA*/metabolism
RNA-Binding Proteins*/chemistry
RNA-Binding Proteins*/genetics
RNA-Binding Proteins*/metabolism
Sequence Analysis, Protein*
DNA/chemistry ; DNA/genetics ; DNA/metabolism ; Protein Binding
: Czasopismo naukowe

Szczegóły Pełny tekst Pełny tekst

Skocz do pozycji: 4 4.

Tytuł :: CRiSP: accurate structure prediction of disulfide-rich peptides with cystine-specific sequence alignment and machine learning.
Autorzy :: Liu ZL; Laboratory of Computational Chemistry and Drug Design, State Key Laboratory of Chemical Oncogenomics, Peking University Shenzhen Graduate School, Shenzhen 518055, China.
Hu JH; Laboratory of Computational Chemistry and Drug Design, State Key Laboratory of Chemical Oncogenomics, Peking University Shenzhen Graduate School, Shenzhen 518055, China.; College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China.
Jiang F; Laboratory of Computational Chemistry and Drug Design, State Key Laboratory of Chemical Oncogenomics, Peking University Shenzhen Graduate School, Shenzhen 518055, China.; NanoAI Biotech Co., Ltd, Shenzhen 518118, China.
Wu YD; Laboratory of Computational Chemistry and Drug Design, State Key Laboratory of Chemical Oncogenomics, Peking University Shenzhen Graduate School, Shenzhen 518055, China.; College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China.; Shenzhen Bay Laboratory, Shenzhen 518055, China.; Pokaż więcej
Źródło :: Bioinformatics (Oxford, England) [Bioinformatics] 2020 Jun 01; Vol. 36 (11), pp. 3385-3392.
Typ publikacji :: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :: Cystine*
Sequence Analysis, Protein*
Algorithms ; Disulfides ; Machine Learning ; Peptides ; Proteins ; Sequence Alignment
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 5 5.

Tytuł :: CATHER: a novel threading algorithm with predicted contacts.
Autorzy :: Du Z; School of Mathematical Sciences, Nankai University, Tianjin 300071, China.
Pan S; School of Mathematical Sciences, Nankai University, Tianjin 300071, China.
Wu Q; School of Mathematical Sciences, Nankai University, Tianjin 300071, China.
Peng Z; Center for Applied Mathematics, Tianjin University, Tianjin 300072, China.
Yang J; School of Mathematical Sciences, Nankai University, Tianjin 300071, China.; Pokaż więcej
Źródło :: Bioinformatics (Oxford, England) [Bioinformatics] 2020 Apr 01; Vol. 36 (7), pp. 2119-2125.
Typ publikacji :: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :: Computational Biology*
Sequence Analysis, Protein*
Algorithms ; Proteins ; Software
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 6 6.

Tytuł :: Identification of a new P450s gene ( AccCYP4AV1 ) and its roles in abiotic stress resistance in the Apis cerana cerana Fabricius.
Autorzy :: Zhang W; College of Animal Science and Technology, Shandong Agricultural University, Tai'an, Shandong, People's Republic of China.
Wang H; College of Animal Science and Technology, Shandong Agricultural University, Tai'an, Shandong, People's Republic of China.
Liu Z; College of Animal Science and Technology, Shandong Agricultural University, Tai'an, Shandong, People's Republic of China.
Wang Y; College of Animal Science and Technology, Shandong Agricultural University, Tai'an, Shandong, People's Republic of China.
Xu B; College of Animal Science and Technology, Shandong Agricultural University, Tai'an, Shandong, People's Republic of China.; Pokaż więcej
Źródło :: Bulletin of entomological research [Bull Entomol Res] 2021 Feb; Vol. 111 (1), pp. 57-65. Date of Electronic Publication: 2020 Oct 27.
Typ publikacji :: Journal Article
MeSH Terms :: Bees/*physiology
Cytochrome P-450 CYP4A/*physiology
Insect Proteins/*physiology
Stress, Physiological/*genetics
Animals ; Bees/genetics ; Bees/growth & development ; Cytochrome P-450 Enzyme System ; Gene Expression Profiling ; Larva/genetics ; Larva/growth & development ; Larva/physiology ; Sequence Analysis, Protein
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 7 7.

Tytuł :: Characterization of a protein with unknown function (LinJ.30.3360) in Leishmania amazonensis and Leishmania infantum.
Autorzy :: Souza AGM; Laboratório de Leishmanioses, Departamento de Parasitologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, CP: 486 - CEP: 31.270-901, Belo Horizonte, MG, Brazil.
Oliveira IHR; Laboratório de Leishmanioses, Departamento de Parasitologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, CP: 486 - CEP: 31.270-901, Belo Horizonte, MG, Brazil.
Fonseca AM; Laboratório de Leishmanioses, Departamento de Parasitologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, CP: 486 - CEP: 31.270-901, Belo Horizonte, MG, Brazil.
Queiroz-Oliveira T; Laboratório de Biologia Celular e Patógenos Intracelulares, Departamento de Parasitologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, CP: 486 - CEP: 31.270-901, Belo Horizonte, MG, Brazil.
Martins-Duarte ÉS; Laboratório de Quimioterapia de Protozoários Egler Chiari, Departamento de Parasitologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, CP: 486 - CEP: 31.270-901, Belo Horizonte, MG, Brazil.
Gomes D; Departamento de Bioquímica e Imunologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, CP: 486 - CEP: 31.270-901, Belo Horizonte, MG, Brazil.
Castro-Gomes T; Laboratório de Biologia Celular e Patógenos Intracelulares, Departamento de Parasitologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, CP: 486 - CEP: 31.270-901, Belo Horizonte, MG, Brazil.
Andrade HM; Laboratório de Leishmanioses, Departamento de Parasitologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, CP: 486 - CEP: 31.270-901, Belo Horizonte, MG, Brazil. Electronic address: .; Pokaż więcej
Źródło :: Experimental parasitology [Exp Parasitol] 2021 Feb; Vol. 221, pp. 108048. Date of Electronic Publication: 2020 Dec 09.
Typ publikacji :: Journal Article
MeSH Terms :: Leishmania infantum/*chemistry
Leishmania mexicana/*chemistry
Protozoan Proteins/*chemistry
Animals ; Blotting, Western ; Conserved Sequence ; Immunohistochemistry ; Leishmania infantum/genetics ; Leishmania mexicana/genetics ; Male ; Microscopy, Fluorescence ; Microscopy, Immunoelectron ; Protein Processing, Post-Translational ; Protein Structure, Secondary ; Protozoan Proteins/genetics ; Protozoan Proteins/isolation & purification ; Protozoan Proteins/metabolism ; Rabbits ; Recombinant Proteins/genetics ; Recombinant Proteins/metabolism ; Sequence Alignment ; Sequence Analysis, Protein
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 8 8.

Tytuł :: Mapping sequence to feature vector using numerical representation of codons targeted to amino acids for alignment-free sequence analysis.
Autorzy :: Das JK; Applied Statistics Unit, Indian Statistical Institute, Kolkata 700108, India; Department of Pediatrics, School of Medicine, Johns Hopkins University, MD 21205, USA.
Sengupta A; Department of Master of Computer Applications, MCKV Institute of Engineering, West Bengal 711204, India.
Choudhury PP; Department of Pediatrics, School of Medicine, Johns Hopkins University, MD 21205, USA.
Roy S; Network Reconstruction & Analysis (NETRA) Lab, Department of Computer Applications, Sikkim University, Sikkim 737102, India. Electronic address: .; Pokaż więcej
Źródło :: Gene [Gene] 2021 Jan 15; Vol. 766, pp. 145096. Date of Electronic Publication: 2020 Sep 09.
Typ publikacji :: Journal Article
MeSH Terms :: Amino Acid Sequence/*genetics
Amino Acids/*genetics
Codon/*genetics
Sequence Alignment/*methods
Sequence Analysis, Protein/*methods
Algorithms ; Animals ; Humans ; Nucleotides/genetics ; Phylogeny ; Proteins/genetics
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 9 9.

Tytuł :: CATH: increased structural coverage of functional space.
Autorzy :: Sillitoe I; Institute of Structural and Molecular Biology, University College London, London WC1E 6BT, UK.
Bordin N; Institute of Structural and Molecular Biology, University College London, London WC1E 6BT, UK.
Dawson N; Institute of Structural and Molecular Biology, University College London, London WC1E 6BT, UK.
Waman VP; Institute of Structural and Molecular Biology, University College London, London WC1E 6BT, UK.
Ashford P; Institute of Structural and Molecular Biology, University College London, London WC1E 6BT, UK.
Scholes HM; Institute of Structural and Molecular Biology, University College London, London WC1E 6BT, UK.
Pang CSM; Institute of Structural and Molecular Biology, University College London, London WC1E 6BT, UK.
Woodridge L; Institute of Structural and Molecular Biology, University College London, London WC1E 6BT, UK.
Rauer C; Institute of Structural and Molecular Biology, University College London, London WC1E 6BT, UK.
Sen N; Institute of Structural and Molecular Biology, University College London, London WC1E 6BT, UK.
Abbasian M; Institute of Structural and Molecular Biology, University College London, London WC1E 6BT, UK.
Le Cornu S; Institute of Structural and Molecular Biology, University College London, London WC1E 6BT, UK.
Lam SD; Department of Applied Physics, Faculty of Science and Technology, Universiti Kebangsaan Malaysia, Bangi, Selangor 43600, Malaysia.
Berka K; Regional Centre of Advanced Technologies and Materials, Department of Physical Chemistry, Faculty of Science, Palacký University Olomouc, Olomouc 771 46, Czech Republic.
Varekova IH; National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno 602 00, Czech Republic.
Svobodova R; Central European Institute of Technology, Masaryk University, Brno 625 00, Czech Republic| National Centre for Biomolecular Research, Faculty of Science, Masaryk University, Brno 602 00, Czech Republic.
Lees J; Department of Biological and Medical Sciences, Faculty of Health and Life Sciences, Oxford Brookes University, Oxford OX3 0BP, UK.
Orengo CA; Institute of Structural and Molecular Biology, University College London, London WC1E 6BT, UK.; Pokaż więcej
Źródło :: Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D266-D273.
Typ publikacji :: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :: Protein Domains*
Computational Biology/*statistics & numerical data
Databases, Protein/*statistics & numerical data
Proteins/*chemistry
Amino Acid Sequence ; COVID-19/epidemiology ; COVID-19/prevention & control ; COVID-19/virology ; Computational Biology/methods ; Epidemics ; Humans ; Internet ; Molecular Sequence Annotation ; Proteins/genetics ; Proteins/metabolism ; SARS-CoV-2/genetics ; SARS-CoV-2/metabolism ; SARS-CoV-2/physiology ; Sequence Analysis, Protein/methods ; Sequence Homology, Amino Acid ; Viral Proteins/chemistry ; Viral Proteins/genetics ; Viral Proteins/metabolism
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 10 10.

Tytuł :: DescribePROT: database of amino acid-level protein structure and function predictions.
Autorzy :: Zhao B; Department of Computer Science, Virginia Commonwealth University, Richmond, VA, USA.
Katuwawala A; Department of Computer Science, Virginia Commonwealth University, Richmond, VA, USA.
Oldfield CJ; Department of Computer Science, Virginia Commonwealth University, Richmond, VA, USA.
Dunker AK; Center for Computational Biology and Bioinformatics, Indiana University School of Medicine, Indianapolis, IN, USA.
Faraggi E; Battelle Center for Mathematical Medicine at the Nationwide Children's Hospital, and Department of Pediatrics, The Ohio State University, Columbus, OH, USA.
Gsponer J; Michael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada.
Kloczkowski A; Battelle Center for Mathematical Medicine at the Nationwide Children's Hospital, and Department of Pediatrics, The Ohio State University, Columbus, OH, USA.
Malhis N; Michael Smith Laboratories, University of British Columbia, Vancouver, BC, Canada.
Mirdita M; Quantitative and Computational Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.
Obradovic Z; Department of Computer and Information Sciences, Temple University, Philadelphia, PA, USA.
Söding J; Quantitative and Computational Biology, Max Planck Institute for Biophysical Chemistry, Göttingen, Germany.
Steinegger M; School of Biological Sciences and Institute of Molecular Biology & Genetics, Seoul National University, Seoul, Republic of Korea.
Zhou Y; Institute for Glycomics, Griffith University, Gold Coast, Queensland, Australia.
Kurgan L; Department of Computer Science, Virginia Commonwealth University, Richmond, VA, USA.; Pokaż więcej
Źródło :: Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D298-D308.
Typ publikacji :: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :: Databases, Protein*
Genome*
Software*
Amino Acids/*chemistry
Proteins/*genetics
Proteome/*genetics
Amino Acid Sequence ; Amino Acids/metabolism ; Animals ; Archaea/genetics ; Archaea/metabolism ; Bacteria/genetics ; Bacteria/metabolism ; Binding Sites ; Conserved Sequence ; Fungi/genetics ; Fungi/metabolism ; Humans ; Internet ; Plants/genetics ; Plants/metabolism ; Prokaryotic Cells/metabolism ; Protein Binding ; Protein Structure, Secondary ; Proteins/chemistry ; Proteins/classification ; Proteins/metabolism ; Proteome/chemistry ; Proteome/metabolism ; Sequence Analysis, Protein ; Viruses/genetics ; Viruses/metabolism
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 11 11.

Tytuł :: Pfam: The protein families database in 2021.
Autorzy :: Mistry J; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton CB10 1SD, UK.
Chuguransky S; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton CB10 1SD, UK.
Williams L; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton CB10 1SD, UK.
Qureshi M; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton CB10 1SD, UK.
Salazar GA; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton CB10 1SD, UK.
Sonnhammer ELL; Department of Biochemistry and Biophysics, Science for Life Laboratory, Stockholm University, Box 1031, 17121 Solna, Sweden.
Tosatto SCE; Department of Biomedical Sciences, University of Padua, 35131 Padova, Italy.
Paladin L; Department of Biomedical Sciences, University of Padua, 35131 Padova, Italy.
Raj S; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton CB10 1SD, UK.
Richardson LJ; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton CB10 1SD, UK.
Finn RD; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton CB10 1SD, UK.
Bateman A; European Molecular Biology Laboratory, European Bioinformatics Institute (EMBL-EBI), Wellcome Genome Campus, Hinxton CB10 1SD, UK.; Pokaż więcej
Źródło :: Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D412-D419.
Typ publikacji :: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :: Databases, Protein*
Computational Biology/*statistics & numerical data
Proteins/*metabolism
Proteome/*metabolism
Animals ; COVID-19/epidemiology ; COVID-19/prevention & control ; COVID-19/virology ; Computational Biology/methods ; Epidemics ; Humans ; Internet ; Models, Molecular ; Protein Structure, Tertiary ; Proteins/chemistry ; Proteins/genetics ; Proteome/classification ; Proteome/genetics ; Repetitive Sequences, Amino Acid/genetics ; SARS-CoV-2/genetics ; SARS-CoV-2/physiology ; Sequence Analysis, Protein/methods
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 12 12.

Tytuł :: High throughput sequencing of in vitro selections of mRNA-displayed peptides: data analysis and applications.
Autorzy :: Blanco C; Department of Chemistry and Biochemistry, University of California, Santa Barbara, CA 93106, USA. .
Verbanic S
Seelig B
Chen IA; Pokaż więcej
Źródło :: Physical chemistry chemical physics : PCCP [Phys Chem Chem Phys] 2020 Mar 28; Vol. 22 (12), pp. 6492-6506. Date of Electronic Publication: 2020 Jan 22.
Typ publikacji :: Journal Article; Review
MeSH Terms :: High-Throughput Nucleotide Sequencing*/standards
High-Throughput Nucleotide Sequencing*/trends
Sequence Analysis, Protein/*methods
Gene Expression Profiling ; In Vitro Techniques ; RNA, Messenger/chemistry ; Sequence Analysis, Protein/instrumentation
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 13 13.

Tytuł :: NLGenomeSweeper: A Tool for Genome-Wide NBS-LRR Resistance Gene Identification.
Autorzy :: Toda N; Université Paris-Saclay, INRAE, Etude du Polymorphisme des Génomes Végétaux (EPGV), 91000 Evry, France.
Rustenholz C; Université de Strasbourg, INRAE, SVQV UMR A 1131, 68000 Colmar, France.
Baud A; Université Paris-Saclay, INRAE, URGI, 78026 Versailles, France.
Le Paslier MC; Université Paris-Saclay, INRAE, Etude du Polymorphisme des Génomes Végétaux (EPGV), 91000 Evry, France.
Amselem J; Université Paris-Saclay, INRAE, URGI, 78026 Versailles, France.
Merdinoglu D; Université de Strasbourg, INRAE, SVQV UMR A 1131, 68000 Colmar, France.
Faivre-Rampant P; Université Paris-Saclay, INRAE, Etude du Polymorphisme des Génomes Végétaux (EPGV), 91000 Evry, France.; Pokaż więcej
Źródło :: Genes [Genes (Basel)] 2020 Mar 20; Vol. 11 (3). Date of Electronic Publication: 2020 Mar 20.
Typ publikacji :: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :: Genomics/*methods
NLR Proteins/*genetics
Plant Proteins/*genetics
Sequence Analysis, Protein/*methods
Software/*standards
Arabidopsis ; Conserved Sequence ; Disease Resistance ; Genomics/standards ; Helianthus ; NLR Proteins/chemistry ; Plant Proteins/chemistry ; Protein Binding ; Protein Domains ; Sequence Analysis, Protein/standards
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 14 14.

Tytuł :: Real-time laser induced chemical derivatizations of peptide N-Terminus for in-situ mass spectrometric sequencing at sub-picomole and nanosecond scale.
Autorzy :: Zhang J; Laboratory of Mass Spectrometry, College of Chemistry, Central China Normal University, Wuhan, Hubei, 430079, PR China; Key Laboratory of Pesticides and Chemical Biology, Ministry of Education, PR China.
Jia S; Laboratory of Mass Spectrometry, College of Chemistry, Central China Normal University, Wuhan, Hubei, 430079, PR China; Key Laboratory of Pesticides and Chemical Biology, Ministry of Education, PR China.
Lu W; Laboratory of Mass Spectrometry, College of Chemistry, Central China Normal University, Wuhan, Hubei, 430079, PR China; Key Laboratory of Pesticides and Chemical Biology, Ministry of Education, PR China.
Li W; Laboratory of Mass Spectrometry, College of Chemistry, Central China Normal University, Wuhan, Hubei, 430079, PR China; Key Laboratory of Pesticides and Chemical Biology, Ministry of Education, PR China.
Jiang R; Laboratory of Mass Spectrometry, College of Chemistry, Central China Normal University, Wuhan, Hubei, 430079, PR China; Key Laboratory of Pesticides and Chemical Biology, Ministry of Education, PR China.
Liu Y; Laboratory of Mass Spectrometry, College of Chemistry, Central China Normal University, Wuhan, Hubei, 430079, PR China; Key Laboratory of Pesticides and Chemical Biology, Ministry of Education, PR China.
Yang X; Laboratory of Mass Spectrometry, College of Chemistry, Central China Normal University, Wuhan, Hubei, 430079, PR China; Key Laboratory of Pesticides and Chemical Biology, Ministry of Education, PR China.
Zou S; Laboratory of Mass Spectrometry, College of Chemistry, Central China Normal University, Wuhan, Hubei, 430079, PR China; Key Laboratory of Pesticides and Chemical Biology, Ministry of Education, PR China.
Zou X; Laboratory of Mass Spectrometry, College of Chemistry, Central China Normal University, Wuhan, Hubei, 430079, PR China; Key Laboratory of Pesticides and Chemical Biology, Ministry of Education, PR China.
Zhong H; Laboratory of Mass Spectrometry, College of Chemistry, Central China Normal University, Wuhan, Hubei, 430079, PR China; Key Laboratory of Pesticides and Chemical Biology, Ministry of Education, PR China. Electronic address: .; Pokaż więcej
Źródło :: Analytica chimica acta [Anal Chim Acta] 2020 Mar 01; Vol. 1100, pp. 1-11. Date of Electronic Publication: 2019 Dec 13.
Typ publikacji :: Journal Article
MeSH Terms :: Lasers*
Sequence Analysis, Protein*
Peptides/*chemistry
Amino Acid Sequence ; Mass Spectrometry ; Molecular Structure ; Time Factors
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 15 15.

Tytuł :: A step-by-step classification algorithm of protein secondary structures based on double-layer SVM model.
Autorzy :: Ge Y; School of Mathematical Sciences, Ocean University of China, Qingdao 266100, PR China.
Zhao S; College of Information Science and Engineering, Ocean University of China, Qingdao 266100, PR China.
Zhao X; School of Mathematical Sciences, Ocean University of China, Qingdao 266100, PR China. Electronic address: .; Pokaż więcej
Źródło :: Genomics [Genomics] 2020 Mar; Vol. 112 (2), pp. 1941-1946. Date of Electronic Publication: 2019 Nov 15.
Typ publikacji :: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :: Support Vector Machine*
Sequence Analysis, Protein/*methods
Animals ; Humans ; Protein Conformation, alpha-Helical ; Protein Conformation, beta-Strand ; Sequence Analysis, Protein/standards
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 16 16.

Tytuł :: The evolution of contact prediction: evidence that contact selection in statistical contact prediction is changing.
Autorzy :: Chonofsky M; Department of Statistics, University of Oxford, Oxford OX1 3LB, UK.
de Oliveira SHP; SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA 94305, USA.; Department of Bioengineering, Stanford University, Menlo Park, CA 94305, USA.
Krawczyk K; Natural Antibody, Hamburg, Germany.
Deane CM; Department of Statistics, University of Oxford, Oxford OX1 3LB, UK.; Pokaż więcej
Źródło :: Bioinformatics (Oxford, England) [Bioinformatics] 2020 Mar 01; Vol. 36 (6), pp. 1750-1756.
Typ publikacji :: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :: Computational Biology*
Sequence Analysis, Protein*
Algorithms ; Protein Conformation ; Proteins/genetics ; Sequence Alignment ; Software
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 17 17.

Tytuł :: HAMAP as SPARQL rules-A portable annotation pipeline for genomes and proteomes.
Autorzy :: Bolleman J; Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland.
de Castro E; Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland.
Baratin D; Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland.
Gehant S; Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland.
Cuche BA; Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland.
Auchincloss AH; Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland.
Coudert E; Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland.
Hulo C; Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland.
Masson P; Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland.
Pedruzzi I; Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland.
Rivoire C; Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland.
Xenarios I; Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland.; Centre Hospitalier Universitaire Vaudois/Ludwig Institute for Cancer Research, Agora Centre, CH-1005 Lausanne, Switzerland.
Redaschi N; Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland.
Bridge A; Swiss-Prot Group, SIB Swiss Institute of Bioinformatics, Centre Médical Universitaire, 1 rue Michel-Servet, CH-1211 Geneva 4, Switzerland.; Pokaż więcej
Źródło :: GigaScience [Gigascience] 2020 Feb 01; Vol. 9 (2).
Typ publikacji :: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :: Genomics/*methods
Molecular Sequence Annotation/*methods
Sequence Analysis, DNA/*methods
Sequence Analysis, Protein/*methods
Software/*standards
Animals ; Genomics/standards ; Humans ; Molecular Sequence Annotation/standards ; Sequence Analysis, DNA/standards ; Sequence Analysis, Protein/standards
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 18 18.

Tytuł :: Presence and structure-activity relationship of intrinsically disordered regions across mucins.
Autorzy :: Carmicheal J; Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha, Nebraska.
Atri P; Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha, Nebraska.
Sharma S; Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha, Nebraska.
Kumar S; Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha, Nebraska.; Buffett Cancer Center, University of Nebraska Medical Center, Omaha, Nebraska.
Chirravuri Venkata R; Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha, Nebraska.
Kulkarni P; Department of Medical Oncology and Therapeutics Research, City of Hope, Duarte, California.
Salgia R; Department of Medical Oncology and Therapeutics Research, City of Hope, Duarte, California.
Ghersi D; School of Interdisciplinary Informatics, University of Nebraska Omaha, Omaha, Nebraska.
Kaur S; Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha, Nebraska.; Buffett Cancer Center, University of Nebraska Medical Center, Omaha, Nebraska.
Batra SK; Department of Biochemistry and Molecular Biology, University of Nebraska Medical Center, Omaha, Nebraska.; Buffett Cancer Center, University of Nebraska Medical Center, Omaha, Nebraska.; Pokaż więcej
Źródło :: FASEB journal : official publication of the Federation of American Societies for Experimental Biology [FASEB J] 2020 Feb; Vol. 34 (2), pp. 1939-1957. Date of Electronic Publication: 2020 Jan 05.
Typ publikacji :: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :: Models, Molecular*
Sequence Analysis, Protein*
Mucins/*chemistry
Glycosylation ; Humans ; Mucins/genetics ; Protein Domains ; Structure-Activity Relationship
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 19 19.

Tytuł :: PreDBA: A heterogeneous ensemble approach for predicting protein-DNA binding affinity.
Autorzy :: Yang W; School of Computer Science and Engineering, Central South University, Changsha, 410075, China.
Deng L; School of Computer Science and Engineering, Central South University, Changsha, 410075, China. .; School of Software, Xinjiang University, Urumqi, 830008, China. .; Pokaż więcej
Źródło :: Scientific reports [Sci Rep] 2020 Jan 28; Vol. 10 (1), pp. 1278. Date of Electronic Publication: 2020 Jan 28.
Typ publikacji :: Journal Article
MeSH Terms :: Models, Chemical*
Sequence Analysis, Protein*
Software*
DNA/*chemistry
DNA-Binding Proteins/*chemistry
DNA/genetics ; DNA-Binding Proteins/genetics
: Czasopismo naukowe

Szczegóły

Skocz do pozycji: 20 20.

Tytuł :: Sequence alignment using machine learning for accurate template-based protein structure prediction.
Autorzy :: Makigaki S; Department of Computer Science, School of Computing, Tokyo Institute of Technology, Meguro-ku, Tokyo 152-8550, Japan.
Ishida T; Department of Computer Science, School of Computing, Tokyo Institute of Technology, Meguro-ku, Tokyo 152-8550, Japan.; Pokaż więcej
Źródło :: Bioinformatics (Oxford, England) [Bioinformatics] 2020 Jan 01; Vol. 36 (1), pp. 104-111.
Typ publikacji :: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :: Proteins*/chemistry
Sequence Alignment*
Sequence Analysis, Protein*/methods
Amino Acid Sequence ; Machine Learning
: Czasopismo naukowe

Szczegóły

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