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Wyszukujesz frazę ""Sequence Analysis, RNA"" wg kryterium: Temat


Tytuł:
DirectRMDB: a database of post-transcriptional RNA modifications unveiled from direct RNA sequencing technology.
Autorzy:
Zhang Y; Key Laboratory of Ministry of Education for Gastrointestinal Cancer, School of Basic Medical Sciences, Fujian Medical University, Fuzhou, Fujian 350004, China.; Department of Biological Sciences, Xi'anJiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.; Institute of Systems, Molecular and Integrative Biology, Xi'anJiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.
Jiang J; Department of Biological Sciences, Xi'anJiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.; Institute of Systems, Molecular and Integrative Biology, Xi'anJiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.
Ma J; Key Laboratory of Ministry of Education for Gastrointestinal Cancer, School of Basic Medical Sciences, Fujian Medical University, Fuzhou, Fujian 350004, China.; Department of Biological Sciences, Xi'anJiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.; Institute of Systems, Molecular and Integrative Biology, Xi'anJiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.
Wei Z; Department of Biological Sciences, Xi'anJiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.; Institute of Life Course and Medical Sciences, Xi'anJiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.
Wang Y; Department of Mathematical Sciences, Xi'anJiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.; Department of Computer Science, University of Liverpool, L69 7ZB, Liverpool, UK.
Song B; Department of Mathematical Sciences, Xi'anJiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.; Institute of Systems, Molecular and Integrative Biology, Xi'anJiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.
Meng J; Department of Biological Sciences, Xi'anJiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.; AI University Research Centre, Xi'an Jiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.; Institute of Systems, Molecular and Integrative Biology, Xi'anJiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.
Jia G; Synthetic and Functional Biomolecules Center, Beijing National Laboratory for Molecular Sciences, Key Laboratory of Bioorganic Chemistry and Molecular Engineering of Ministry of Education, College of Chemistry and Molecular Engineering, Peking University, Beijing, China.
de Magalhães JP; Institute of Life Course and Medical Sciences, Xi'anJiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.
Rigden DJ; Institute of Systems, Molecular and Integrative Biology, Xi'anJiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.
Hang D; Department of Biological Sciences, Xi'anJiaotong-Liverpool University, Suzhou, Jiangsu 215123, China.; Department of Computer Science, University of Liverpool, L69 7ZB, Liverpool, UK.
Chen K; Key Laboratory of Ministry of Education for Gastrointestinal Cancer, School of Basic Medical Sciences, Fujian Medical University, Fuzhou, Fujian 350004, China.; Fujian Key Laboratory of Tumor Microbiology, Department of Medical Microbiology, School of Basic Medical Sciences, Fujian Medical University, Fuzhou, Fujian 350004, China.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2023 Jan 06; Vol. 51 (D1), pp. D106-D116.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
High-Throughput Nucleotide Sequencing*/methods
RNA Processing, Post-Transcriptional*
Sequence Analysis, RNA*/methods
Molecular Sequence Annotation ; Protein Isoforms ; RNA/genetics ; Databases, Nucleic Acid
Czasopismo naukowe
Tytuł:
annotate_my_genomes: an easy-to-use pipeline to improve genome annotation and uncover neglected genes by hybrid RNA sequencing.
Autorzy:
Farkas C; Laboratorio de Investigación en Ciencias Biomédicas, Departamento de Ciencias Básicas y Morfología, Facultad de Medicina, Universidad Católica de la Santísima Concepción, Concepción, Chile.
Recabal A; Departamento de Biología Celular, Facultad de Ciencias Biológicas, Universidad de Concepción, Chile.
Mella A; Instituto de Ciencias Naturales, Universidad de las Américas, Chile.; Centro Integrativo de Biología y Química Aplicada (CIBQA), Universidad Bernardo O'Higgins, Santiago 8370854, Chile.
Candia-Herrera D; Departamento de Bioquímica y Biología Molecular, Facultad de Ciencias Biológicas, Universidad de Concepción, Chile.
Olivero MG; Departamento de Biología Celular, Facultad de Ciencias Biológicas, Universidad de Concepción, Chile.
Haigh JJ; CancerCare Manitoba Research Institute, Winnipeg, MB, Canada.; Department of Pharmacology and Therapeutics, Rady Faculty of Health Sciences, University of Manitoba, Winnipeg, MB, Canada.
Tarifeño-Saldivia E; Departamento de Bioquímica y Biología Molecular, Facultad de Ciencias Biológicas, Universidad de Concepción, Chile.
Caprile T; Departamento de Biología Celular, Facultad de Ciencias Biológicas, Universidad de Concepción, Chile.
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Źródło:
GigaScience [Gigascience] 2022 Dec 06; Vol. 11.
Typ publikacji:
Journal Article
MeSH Terms:
Sequence Analysis, RNA*
Czasopismo naukowe
Tytuł:
Long-read single-molecule RNA structure sequencing using nanopore.
Autorzy:
Bizuayehu TT; Computational Biology Unit, Department of Informatics, University of Bergen, Norway.; Sars International Center for Marine Molecular Biology, University of Bergen, Norway.
Labun K; Computational Biology Unit, Department of Informatics, University of Bergen, Norway.
Jakubec M; Department of Chemistry, University of Tromsø, Norway.
Jefimov K; Computational Biology Unit, Department of Informatics, University of Bergen, Norway.
Niazi AM; Computational Biology Unit, Department of Informatics, University of Bergen, Norway.
Valen E; Computational Biology Unit, Department of Informatics, University of Bergen, Norway.; Sars International Center for Marine Molecular Biology, University of Bergen, Norway.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2022 Nov 11; Vol. 50 (20), pp. e120.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Nanopores*
RNA*/genetics
RNA*/chemistry
Sequence Analysis, RNA*/methods
Nucleic Acid Conformation*
Riboswitch ; Transcriptome
Czasopismo naukowe
Tytuł:
An advocate for Africa.
Autorzy:
Wadman M
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Źródło:
Science (New York, N.Y.) [Science] 2022 Oct 07; Vol. 378 (6615), pp. 17-21. Date of Electronic Publication: 2022 Oct 06.
Typ publikacji:
Biography; Historical Article; News; Portrait
MeSH Terms:
COVID-19*/history
COVID-19*/virology
Computational Biology*/history
SARS-CoV-2*/genetics
Sequence Analysis, RNA*/history
Brazil ; History, 21st Century ; Humans ; South Africa
Personal Name as Subject:
de Oliveira T
SCR Organism:
SARS-CoV-2 variants
Periodyk
Tytuł:
Direct tracking of reverse-transcriptase speed and template sensitivity: implications for sequencing and analysis of long RNA molecules.
Autorzy:
Guo LT; Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520, USA.
Olson S; Department of Genetics and Genome Sciences, Institute for Systems Genomics, UConn Health, Farmington, CT 06030-6403, USA.
Patel S; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT 06520, USA.
Graveley BR; Department of Genetics and Genome Sciences, Institute for Systems Genomics, UConn Health, Farmington, CT 06030-6403, USA.
Pyle AM; Department of Molecular, Cellular, and Developmental Biology, Yale University, New Haven, CT 06520, USA.; Howard Hughes Medical Institute, Chevy Chase, MD 20815, USA.; Department of Chemistry, Yale University, New Haven, CT 06520, USA.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2022 Jul 08; Vol. 50 (12), pp. 6980-6989.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Biotechnology*
RNA-Directed DNA Polymerase*/genetics
Sequence Analysis, RNA*/methods
Czasopismo naukowe
Tytuł:
Mapping single-nucleotide m A-REF-seq.
Autorzy:
Chen HX; MOE Key Laboratory of Gene Function and Regulation, Guangdong Province Key Laboratory of Pharmaceutical Functional Genes, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China.
Zhang Z; MOE Key Laboratory of Gene Function and Regulation, Guangdong Province Key Laboratory of Pharmaceutical Functional Genes, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China.
Ma DZ; MOE Key Laboratory of Gene Function and Regulation, Guangdong Province Key Laboratory of Pharmaceutical Functional Genes, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China.
Chen LQ; MOE Key Laboratory of Gene Function and Regulation, Guangdong Province Key Laboratory of Pharmaceutical Functional Genes, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China.
Luo GZ; MOE Key Laboratory of Gene Function and Regulation, Guangdong Province Key Laboratory of Pharmaceutical Functional Genes, State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou 510275, China. Electronic address: .
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Źródło:
Methods (San Diego, Calif.) [Methods] 2022 Jul; Vol. 203, pp. 392-398. Date of Electronic Publication: 2021 Jun 24.
Typ publikacji:
Journal Article
MeSH Terms:
Nucleotides*
RNA*
Sequence Analysis, RNA*/methods
Adenosine/*analogs & derivatives
High-Throughput Nucleotide Sequencing/methods ; RNA, Messenger/genetics
Czasopismo naukowe
Tytuł:
CF-Seq, an accessible web application for rapid re-analysis of cystic fibrosis pathogen RNA sequencing studies.
Autorzy:
Neff SL; Geisel School of Medicine, Dartmouth College, Hanover, NH, USA.
Hampton TH; Geisel School of Medicine, Dartmouth College, Hanover, NH, USA.
Puerner C; Geisel School of Medicine, Dartmouth College, Hanover, NH, USA.
Cengher L; Geisel School of Medicine, Dartmouth College, Hanover, NH, USA.
Doing G; Geisel School of Medicine, Dartmouth College, Hanover, NH, USA.
Lee AJ; University of Pennsylvania, Philadelphia, PA, USA.
Koeppen K; Geisel School of Medicine, Dartmouth College, Hanover, NH, USA.
Cheung AL; Geisel School of Medicine, Dartmouth College, Hanover, NH, USA.
Hogan DA; Geisel School of Medicine, Dartmouth College, Hanover, NH, USA.
Cramer RA; Geisel School of Medicine, Dartmouth College, Hanover, NH, USA.
Stanton BA; Geisel School of Medicine, Dartmouth College, Hanover, NH, USA. .
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Źródło:
Scientific data [Sci Data] 2022 Jun 16; Vol. 9 (1), pp. 343. Date of Electronic Publication: 2022 Jun 16.
Typ publikacji:
Dataset; Journal Article
MeSH Terms:
Cystic Fibrosis*/genetics
Sequence Analysis, RNA*
Data Analysis ; Humans ; RNA-Seq ; Software
Czasopismo naukowe
Tytuł:
THRONE: A New Approach for Accurate Prediction of Human RNA N7-Methylguanosine Sites.
Autorzy:
Shoombuatong W; Center of Data Mining and Biomedical Informatics, Faculty of Medical Technology, Mahidol University, Bangkok 10700, Thailand.
Basith S; Department of Physiology, Ajou University School of Medicine, Suwon 16499, Republic of Korea; Department of Molecular Science and Technology, Ajou University, Suwon 16499, Republic of Korea.
Pitti T; Computational Biology and Bioinformatics Laboratory, Department of Integrative Biotechnology, College of Biotechnology and Bioengineering, Sungkyunkwan University, Suwon 16419, Gyeonggi-do, Republic of Korea.
Lee G; Department of Physiology, Ajou University School of Medicine, Suwon 16499, Republic of Korea; Department of Molecular Science and Technology, Ajou University, Suwon 16499, Republic of Korea. Electronic address: .
Manavalan B; Department of Physiology, Ajou University School of Medicine, Suwon 16499, Republic of Korea; Computational Biology and Bioinformatics Laboratory, Department of Integrative Biotechnology, College of Biotechnology and Bioengineering, Sungkyunkwan University, Suwon 16419, Gyeonggi-do, Republic of Korea. Electronic address: .
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Źródło:
Journal of molecular biology [J Mol Biol] 2022 Jun 15; Vol. 434 (11), pp. 167549. Date of Electronic Publication: 2022 Mar 16.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Guanosine*/analogs & derivatives
Machine Learning*
RNA Caps*/chemistry
RNA Caps*/genetics
Sequence Analysis, RNA*/methods
Computational Biology ; Genome, Human ; Humans ; Software
Czasopismo naukowe
Tytuł:
Novel biomarkers identified in triple-negative breast cancer through RNA-sequencing.
Autorzy:
Chen YL; Department of Clinical Laboratory, Peking University People's Hospital, Beijing, China. Electronic address: .
Wang K; Department of Clinical Laboratory, Peking University People's Hospital, Beijing, China. Electronic address: .
Xie F; Breast Center, Peking University People's Hospital, Beijing, China.
Zhuo ZL; Department of Clinical Laboratory, Peking University People's Hospital, Beijing, China. Electronic address: .
Liu C; Department of Clinical Laboratory, Peking University People's Hospital, Beijing, China.
Yang Y; Department of Clinical Laboratory, Peking University People's Hospital, Beijing, China. Electronic address: .
Wang S; Breast Center, Peking University People's Hospital, Beijing, China.
Zhao XT; Department of Clinical Laboratory, Peking University People's Hospital, Beijing, China. Electronic address: .
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Źródło:
Clinica chimica acta; international journal of clinical chemistry [Clin Chim Acta] 2022 Jun 01; Vol. 531, pp. 302-308. Date of Electronic Publication: 2022 Apr 30.
Typ publikacji:
Journal Article
MeSH Terms:
Biomarkers, Tumor*/genetics
Sequence Analysis, RNA*
Triple Negative Breast Neoplasms*/diagnosis
Triple Negative Breast Neoplasms*/genetics
Triple Negative Breast Neoplasms*/pathology
Computational Biology ; Gene Expression Regulation, Neoplastic ; Gene Ontology ; Humans ; Membrane Proteins/genetics ; Neoplasm Proteins/genetics ; RNA/genetics
Czasopismo naukowe
Tytuł:
scIMC: a platform for benchmarking comparison and visualization analysis of scRNA-seq data imputation methods.
Autorzy:
Dai C; College of Intelligence and Computing, Tianjin University, Tianjin, China.
Jiang Y; School of Software, Shandong University, Jinan, China.; Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University, Jinan, China.
Yin C; School of Software, Shandong University, Jinan, China.; Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University, Jinan, China.
Su R; College of Intelligence and Computing, Tianjin University, Tianjin, China.
Zeng X; College of Computer Science and Electronic Engineering, Hunan University, Changsha, China.
Zou Q; Institute of Fundamental and Frontier Sciences, University of Electronic Science and Technology of China, China.
Nakai K; Human Genome Center, Institute of Medical Science, University of Tokyo, Tokyo, Japan.
Wei L; School of Software, Shandong University, Jinan, China.; Joint SDU-NTU Centre for Artificial Intelligence Research (C-FAIR), Shandong University, Jinan, China.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2022 May 20; Vol. 50 (9), pp. 4877-4899.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Expression Profiling*
Sequence Analysis, RNA*/methods
Single-Cell Analysis*/methods
Benchmarking ; Cluster Analysis ; Software
Czasopismo naukowe
Tytuł:
Cross-tissue immune cell analysis reveals tissue-specific features in humans.
Autorzy:
Domínguez Conde C; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Xu C; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Jarvis LB; Department of Clinical Neurosciences, University of Cambridge, Cambridge, UK.
Rainbow DB; Department of Clinical Neurosciences, University of Cambridge, Cambridge, UK.
Wells SB; Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA.
Gomes T; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Howlett SK; Department of Clinical Neurosciences, University of Cambridge, Cambridge, UK.
Suchanek O; Molecular Immunity Unit, Department of Medicine, University of Cambridge, Cambridge, UK.
Polanski K; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
King HW; Centre for Immunobiology, Blizard Institute, Queen Mary University of London, London, UK.
Mamanova L; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Huang N; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Szabo PA; Department of Microbiology and Immunology, Columbia University Irving Medical Center, New York, NY, USA.
Richardson L; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Bolt L; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Fasouli ES; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Mahbubani KT; Department of Surgery, University of Cambridge and NIHR Cambridge Biomedical Research Centre, Cambridge, UK.
Prete M; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Tuck L; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Richoz N; Molecular Immunity Unit, Department of Medicine, University of Cambridge, Cambridge, UK.
Tuong ZK; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.; Molecular Immunity Unit, Department of Medicine, University of Cambridge, Cambridge, UK.
Campos L; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.; West Suffolk Hospital NHS Trust, Bury Saint Edmunds, UK.
Mousa HS; Department of Clinical Neurosciences, University of Cambridge, Cambridge, UK.
Needham EJ; Department of Clinical Neurosciences, University of Cambridge, Cambridge, UK.
Pritchard S; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Li T; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Elmentaite R; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Park J; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Rahmani E; Center for Computational Biology, University of California, Berkeley, Berkeley, CA, USA.; Department of Electrical Engineering and Computer Sciences, University of California, Berkeley, Berkeley, CA, USA.
Chen D; Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA.
Menon DK; Department of Anaesthesia, University of Cambridge, Cambridge, UK.
Bayraktar OA; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
James LK; Centre for Immunobiology, Blizard Institute, Queen Mary University of London, London, UK.
Meyer KB; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.
Yosef N; Center for Computational Biology, University of California, Berkeley, Berkeley, CA, USA.; Department of Electrical Engineering and Computer Sciences, University of California, Berkeley, Berkeley, CA, USA.; Chan Zuckerberg Biohub, San Francisco, CA, USA.; Ragon Institute of MGH, MIT and Harvard, Cambridge, MA, USA.
Clatworthy MR; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.; Molecular Immunity Unit, Department of Medicine, University of Cambridge, Cambridge, UK.
Sims PA; Department of Systems Biology, Columbia University Irving Medical Center, New York, NY, USA.
Farber DL; Department of Microbiology and Immunology, Columbia University Irving Medical Center, New York, NY, USA.
Saeb-Parsy K; Department of Surgery, University of Cambridge and NIHR Cambridge Biomedical Research Centre, Cambridge, UK.
Jones JL; Department of Clinical Neurosciences, University of Cambridge, Cambridge, UK.
Teichmann SA; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, Cambridge, UK.; Theory of Condensed Matter, Cavendish Laboratory, Department of Physics, University of Cambridge, Cambridge, UK.
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Źródło:
Science (New York, N.Y.) [Science] 2022 May 13; Vol. 376 (6594), pp. eabl5197. Date of Electronic Publication: 2022 May 13.
Typ publikacji:
Journal Article
MeSH Terms:
B-Lymphocytes*
Machine Learning*
Sequence Analysis, RNA*
Single-Cell Analysis*
T-Lymphocytes*
Transcriptome*
Cells, Cultured ; Humans ; Organ Specificity
Czasopismo naukowe
Tytuł:
STRIDE: accurately decomposing and integrating spatial transcriptomics using single-cell RNA sequencing.
Autorzy:
Sun D; Department of Urology, Tongji Hospital, Frontier Science Center for Stem Cells, School of Life Science and Technology, Tongji University, Shanghai 200092, China.
Liu Z; Department of Urology, Tongji Hospital, Frontier Science Center for Stem Cells, School of Life Science and Technology, Tongji University, Shanghai 200092, China.
Li T; State Key Laboratory of Oral Diseases, National Clinical Research Center for Oral Diseases, Chinese Academy of Medical Sciences Research Unit of Oral Carcinogenesis and Management, West China Hospital of Stomatology, Sichuan University, Chengdu, Sichuan 610041, China.
Wu Q; Clinical and Translational Research Center of Shanghai First Maternity and Infant Hospital, Frontier Science Center for Stem Cells,School of Life Sciences and Technology, Tongji University, Shanghai 200092, China.
Wang C; Department of Urology, Tongji Hospital, Frontier Science Center for Stem Cells, School of Life Science and Technology, Tongji University, Shanghai 200092, China.
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Źródło:
Nucleic acids research [Nucleic Acids Res] 2022 Apr 22; Vol. 50 (7), pp. e42.
Typ publikacji:
Journal Article
MeSH Terms:
Sequence Analysis, RNA*
Single-Cell Analysis*/methods
Software*
Transcriptome*
Exome Sequencing
Czasopismo naukowe
Tytuł:
R code and downstream analysis objects for the scRNA-seq atlas of normal and tumorigenic human breast tissue.
Autorzy:
Chen Y; The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, 3052, Australia.; Department of Medical Biology, The University of Melbourne, Parkville, Victoria, 3010, Australia.
Pal B; Olivia Newton-John Cancer Research Institute, Heidelberg, Vic, 3084, Australia.; School of Cancer Medicine, La Trobe University, Bundoora, Vic, Australia.
Lindeman GJ; The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, 3052, Australia.; Department of Medicine, The University of Melbourne, Parkville, Victoria, 3010, Australia.
Visvader JE; The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, 3052, Australia.; Department of Medical Biology, The University of Melbourne, Parkville, Victoria, 3010, Australia.
Smyth GK; The Walter and Eliza Hall Institute of Medical Research, Parkville, Victoria, 3052, Australia. .; School of Mathematics and Statistics, The University of Melbourne, Parkville, Victoria, 3010, Australia. .
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Źródło:
Scientific data [Sci Data] 2022 Mar 23; Vol. 9 (1), pp. 96. Date of Electronic Publication: 2022 Mar 23.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Breast Neoplasms*/genetics
Sequence Analysis, RNA*
Single-Cell Analysis*
Computational Biology ; Datasets as Topic ; Female ; Gene Expression Profiling ; Humans ; Tumor Microenvironment ; Exome Sequencing
Czasopismo naukowe
Tytuł:
Linking genome wide RNA sequencing with physio-biochemical and cytological responses to catalogue key genes and metabolic pathways for alkalinity stress tolerance in lentil (Lens culinaris Medikus).
Autorzy:
Singh D; Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India. .
Singh CK; Division of Genetics, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India.
Taunk J; Division of Plant Physiology, Indian Agricultural Research Institute, New Delhi, 110012, India.
Gaikwad K; ICAR-National Institute of Plant Biotechnology, 110012, New Delhi, India.
Singh V; Division of Crop Improvement, Central Soil Salinity Research Institute, 132001, Karnal, India.
Sanwal SK; Division of Crop Improvement, Central Soil Salinity Research Institute, 132001, Karnal, India.
Karwa S; Division of Plant Physiology, Indian Agricultural Research Institute, New Delhi, 110012, India.
Singh D; Depatment of Botany, Meerut College, 250001, Meerut, India.
Sharma PC; Division of Crop Improvement, Central Soil Salinity Research Institute, 132001, Karnal, India.
Yadav RK; Department of Genetics and Plant Breeding, Chandra Shekhar Azad University of Agriculture and Technology, 208002, Kanpur, India.
Pal M; Division of Plant Physiology, Indian Agricultural Research Institute, New Delhi, 110012, India. .
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Źródło:
BMC plant biology [BMC Plant Biol] 2022 Mar 05; Vol. 22 (1), pp. 99. Date of Electronic Publication: 2022 Mar 05.
Typ publikacji:
Comparative Study; Journal Article
MeSH Terms:
Sequence Analysis, RNA*
Abscisic Acid/*metabolism
Lens Plant/*cytology
Lens Plant/*genetics
Lens Plant/*metabolism
Salt Stress/*genetics
Salt Tolerance/*genetics
Crops, Agricultural/cytology ; Crops, Agricultural/genetics ; Crops, Agricultural/metabolism ; Gene Expression Profiling ; Gene Expression Regulation, Plant ; Genes, Plant ; Genetic Variation ; Genome-Wide Association Study ; Genotype ; Metabolic Networks and Pathways ; Plant Roots/metabolism
Czasopismo naukowe
Tytuł:
Global analysis of alternative splicing events based on long- and short-read RNA sequencing during grape berry development.
Autorzy:
Ma SH; College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang 471023, China; Henan Engineering Technology Research Center of Quality Regulation of Horticultural Plants, Luoyang 471023, China.
He GQ; College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang 471023, China; Henan Engineering Technology Research Center of Quality Regulation of Horticultural Plants, Luoyang 471023, China.
Navarro-Payá D; Institute for Integrative Systems Biology (I2SysBio), Universitat de València-CSIC, Paterna, Spain.
Santiago A; Institute for Integrative Systems Biology (I2SysBio), Universitat de València-CSIC, Paterna, Spain.
Cheng YZ; College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang 471023, China; Henan Engineering Technology Research Center of Quality Regulation of Horticultural Plants, Luoyang 471023, China.
Jiao JB; College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang 471023, China; Henan Engineering Technology Research Center of Quality Regulation of Horticultural Plants, Luoyang 471023, China.
Li HJ; College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang 471023, China; Henan Engineering Technology Research Center of Quality Regulation of Horticultural Plants, Luoyang 471023, China.
Zuo DD; College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang 471023, China; Henan Engineering Technology Research Center of Quality Regulation of Horticultural Plants, Luoyang 471023, China.
Sun HT; College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang 471023, China; Henan Engineering Technology Research Center of Quality Regulation of Horticultural Plants, Luoyang 471023, China.
Pei MS; College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang 471023, China; Henan Engineering Technology Research Center of Quality Regulation of Horticultural Plants, Luoyang 471023, China.
Yu YH; College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang 471023, China; Henan Engineering Technology Research Center of Quality Regulation of Horticultural Plants, Luoyang 471023, China.
Matus JT; Institute for Integrative Systems Biology (I2SysBio), Universitat de València-CSIC, Paterna, Spain.
Guo DL; College of Horticulture and Plant Protection, Henan University of Science and Technology, Luoyang 471023, China; Henan Engineering Technology Research Center of Quality Regulation of Horticultural Plants, Luoyang 471023, China. Electronic address: .
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Źródło:
Gene [Gene] 2023 Feb 05; Vol. 852, pp. 147056. Date of Electronic Publication: 2022 Nov 19.
Typ publikacji:
Journal Article
MeSH Terms:
Vitis*/genetics
Alternative Splicing ; Fruit/genetics ; Sequence Analysis, RNA ; Gene Expression Profiling ; RNA Splicing ; High-Throughput Nucleotide Sequencing
Czasopismo naukowe
Tytuł:
New insights on the regulatory network of drought-responsive key genes in Arabidopsis thaliana.
Autorzy:
Arjmand MP; Department of Plant Biotechnology, Faculty of Agricultural Sciences, University of Guilan, Rasht, Iran.
Lahiji HS; Department of Plant Biotechnology, Faculty of Agricultural Sciences, University of Guilan, Rasht, Iran. .
Golfazani MM; Department of Plant Biotechnology, Faculty of Agricultural Sciences, University of Guilan, Rasht, Iran.
Biglouei MH; Department of Water Engineering, Faculty of Agricultural Sciences, University of Guilan, Rasht, Iran.
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Źródło:
Genetica [Genetica] 2023 Feb; Vol. 151 (1), pp. 29-45. Date of Electronic Publication: 2022 Dec 06.
Typ publikacji:
Journal Article
MeSH Terms:
Arabidopsis*/genetics
MicroRNAs*/genetics
Droughts ; Plant Breeding ; Sequence Analysis, RNA ; Stress, Physiological/genetics ; Gene Expression Regulation, Plant ; Gene Expression Profiling
Czasopismo naukowe
Tytuł:
Toward kingdom-wide analyses of gene expression.
Autorzy:
Julca I; School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551, Singapore.
Tan QW; School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551, Singapore.
Mutwil M; School of Biological Sciences, Nanyang Technological University, 60 Nanyang Drive, Singapore 637551, Singapore. Electronic address: .
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Źródło:
Trends in plant science [Trends Plant Sci] 2023 Feb; Vol. 28 (2), pp. 235-249. Date of Electronic Publication: 2022 Nov 04.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Gene Expression Profiling*
Software*
Sequence Analysis, RNA ; Gene Expression ; Transcriptome/genetics
Czasopismo naukowe
Tytuł:
Transcriptome annotation of 17 porcine tissues using nanopore sequencing technology.
Autorzy:
Li J; Department of Animal Science, University of California Davis, Davis, California, USA.
Guan D; Department of Animal Science, University of California Davis, Davis, California, USA.
Halstead MM; Department of Animal Science, University of California Davis, Davis, California, USA.
Islas-Trejo AD; Department of Animal Science, University of California Davis, Davis, California, USA.
Goszczynski DE; Department of Animal Science, University of California Davis, Davis, California, USA.
Ernst CW; Department of Animal Science, Michigan State University, East Lansing, Michigan, USA.
Cheng H; Department of Animal Science, University of California Davis, Davis, California, USA.
Ross P; Department of Animal Science, University of California Davis, Davis, California, USA.
Zhou H; Department of Animal Science, University of California Davis, Davis, California, USA.
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Źródło:
Animal genetics [Anim Genet] 2023 Feb; Vol. 54 (1), pp. 35-44. Date of Electronic Publication: 2022 Nov 16.
Typ publikacji:
Journal Article
MeSH Terms:
Transcriptome*
Nanopore Sequencing*
Animals ; Swine/genetics ; Molecular Sequence Annotation ; Sequence Analysis, RNA ; Technology ; High-Throughput Nucleotide Sequencing ; Gene Expression Profiling/veterinary
Czasopismo naukowe
Tytuł:
Defining the pig microglial transcriptome reveals its core signature, regional heterogeneity, and similarity with human and rodent microglia.
Autorzy:
Shih BB; The Roslin Institute, Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian, UK.
Brown SM; The Roslin Institute, Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian, UK.
Barrington J; UK Dementia Research Institute, The University of Edinburgh, Edinburgh Medical School, The Chancellor's Building, Edinburgh, UK.; Centre for Clinical Brain Sciences, University of Edinburgh, Edinburgh, UK.
Lefevre L; UK Dementia Research Institute, The University of Edinburgh, Edinburgh Medical School, The Chancellor's Building, Edinburgh, UK.; Centre for Discovery Brain Sciences, University of Edinburgh, Edinburgh, UK.
Mabbott NA; The Roslin Institute, Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian, UK.
Priller J; UK Dementia Research Institute, The University of Edinburgh, Edinburgh Medical School, The Chancellor's Building, Edinburgh, UK.; Department of Psychiatry and Psychotherapy, Klinikum rechts der Isar, Technical University Munich, Munich, Germany.; DZNE, Charité-Universitätsmedizin Berlin, Berlin, Germany.
Thompson G; Centre for Clinical Brain Sciences, University of Edinburgh, Edinburgh, UK.
Lawrence AB; The Roslin Institute, Royal (Dick) School of Veterinary Studies, University of Edinburgh, Midlothian, UK.; Scotland's Rural College (SRUC), Edinburgh, UK.
McColl BW; UK Dementia Research Institute, The University of Edinburgh, Edinburgh Medical School, The Chancellor's Building, Edinburgh, UK.; Centre for Discovery Brain Sciences, University of Edinburgh, Edinburgh, UK.
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Źródło:
Glia [Glia] 2023 Feb; Vol. 71 (2), pp. 334-349. Date of Electronic Publication: 2022 Sep 19.
Typ publikacji:
Journal Article
MeSH Terms:
Microglia*/metabolism
Transcriptome*
Animals ; Humans ; Mice ; Swine ; Rodentia/genetics ; Sequence Analysis, RNA ; Macrophages/metabolism
Czasopismo naukowe
Tytuł:
A Nile rat transcriptomic landscape across 22 organs by ultra-deep sequencing and comparative RNA-seq pipeline (CRSP).
Autorzy:
Toh H; Neuroscience Research Institute, University of California Santa Barbara, Santa Barbara, CA, USA.
Bagheri A; Department of Biological, Geological and Environmental Sciences, Cleveland State University, Cleveland, OH 44115, USA; Center for Gene Regulation in Health and Disease, Cleveland State University, Cleveland, OH 44115, USA.
Dewey C; Department of Biostatistics and Medical Informatics, University of Wisconsin-Madison, Madison, WI 53706, USA; Department of Computer Science, University of Wisconsin-Madison, Madison, WI 53706, USA.
Stewart R; Morgridge Institute for Research, Madison, WI 53706, USA.
Yan L; Department of Psychology and Neuroscience Program, Michigan State University, East Lansing, MI, USA.
Clegg D; Department of Molecular, Cellular and Developmental Biology, University of California Santa Barbara, Santa Barbara, CA, USA.
Thomson JA; Morgridge Institute for Research, Madison, WI 53706, USA; Department of Molecular, Cellular and Developmental Biology, University of California Santa Barbara, Santa Barbara, CA, USA.
Jiang P; Department of Biological, Geological and Environmental Sciences, Cleveland State University, Cleveland, OH 44115, USA; Center for Gene Regulation in Health and Disease, Cleveland State University, Cleveland, OH 44115, USA; Center for RNA Science and Therapeutics, School of Medicine, Case Western Reserve University, 10900 Euclid Avenue, Cleveland, OH 44106, USA. Electronic address: .
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Źródło:
Computational biology and chemistry [Comput Biol Chem] 2023 Feb; Vol. 102, pp. 107795. Date of Electronic Publication: 2022 Nov 23.
Typ publikacji:
Journal Article
MeSH Terms:
Transcriptome*/genetics
Murinae*
Humans ; Animals ; RNA-Seq ; Gene Expression Profiling ; Genome ; Sequence Analysis, RNA/methods ; High-Throughput Nucleotide Sequencing
Czasopismo naukowe

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