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Wyszukujesz frazę ""Sequence Analysis, RNA"" wg kryterium: Temat


Tytuł :
Single-cell RNA sequencing reveals atlas of dairy goat testis cells.
Autorzy :
Yu XW; College of Veterinary Medicine, Northwest A & F University, Shaanxi Centre of Stem Cells Engineering & Technology, Yangling, Shaanxi 712100, China.
Li TT; College of Life Science, Northwest A & F University, Yangling, Shaanxi 712100, China.
Du XM; College of Veterinary Medicine, Northwest A & F University, Shaanxi Centre of Stem Cells Engineering & Technology, Yangling, Shaanxi 712100, China.
Shen QY; College of Veterinary Medicine, Northwest A & F University, Shaanxi Centre of Stem Cells Engineering & Technology, Yangling, Shaanxi 712100, China.
Zhang MF; College of Veterinary Medicine, Northwest A & F University, Shaanxi Centre of Stem Cells Engineering & Technology, Yangling, Shaanxi 712100, China.
Wei YD; College of Veterinary Medicine, Northwest A & F University, Shaanxi Centre of Stem Cells Engineering & Technology, Yangling, Shaanxi 712100, China.
Yang DH; College of Veterinary Medicine, Northwest A & F University, Shaanxi Centre of Stem Cells Engineering & Technology, Yangling, Shaanxi 712100, China.
Xu WJ; College of Veterinary Medicine, Northwest A & F University, Shaanxi Centre of Stem Cells Engineering & Technology, Yangling, Shaanxi 712100, China.
Chen WB; College of Life Science, Northwest A & F University, Yangling, Shaanxi 712100, China.
Bai CL; Key Laboratory for Mammalian Reproductive Biology and Biotechnology, Ministry of Education, Inner Mongolia University, Hohhot, 010021, China.
Li XL; Key Laboratory for Mammalian Reproductive Biology and Biotechnology, Ministry of Education, Inner Mongolia University, Hohhot, 010021, China.
Li GP; Key Laboratory for Mammalian Reproductive Biology and Biotechnology, Ministry of Education, Inner Mongolia University, Hohhot, 010021, China.
Li N; College of Veterinary Medicine, Northwest A & F University, Shaanxi Centre of Stem Cells Engineering & Technology, Yangling, Shaanxi 712100, China.
Peng S; College of Veterinary Medicine, Northwest A & F University, Shaanxi Centre of Stem Cells Engineering & Technology, Yangling, Shaanxi 712100, China. E-mail:.
Liao MZ; College of Life Science, Northwest A & F University, Yangling, Shaanxi 712100, China. E-mail:.
Hua JL; College of Veterinary Medicine, Northwest A & F University, Shaanxi Centre of Stem Cells Engineering & Technology, Yangling, Shaanxi 712100, China. E-mail:.
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Źródło :
Zoological research [Zool Res] 2021 Jul 18; Vol. 42 (4), pp. 401-405.
Typ publikacji :
Letter
MeSH Terms :
Single-Cell Analysis*
Goats/*genetics
Sequence Analysis, RNA/*veterinary
Testis/*cytology
Animals ; Goats/anatomy & histology ; Male ; Sequence Analysis, RNA/methods ; Spermatogenesis/genetics
Opinia redakcyjna
Tytuł :
Single-nucleus RNA-seq2 reveals functional crosstalk between liver zonation and ploidy.
Autorzy :
Richter ML; Helmholtz Pioneer Campus (HPC), Helmholtz Zentrum München, Neuherberg, Germany.
Deligiannis IK; Helmholtz Pioneer Campus (HPC), Helmholtz Zentrum München, Neuherberg, Germany.
Yin K; Helmholtz Pioneer Campus (HPC), Helmholtz Zentrum München, Neuherberg, Germany.; University of Cambridge, Cancer Research UK Cambridge Institute, Robinson Way, Cambridge, United Kingdom.
Danese A; Institute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany.
Lleshi E; University of Cambridge, Cancer Research UK Cambridge Institute, Robinson Way, Cambridge, United Kingdom.
Coupland P; University of Cambridge, Cancer Research UK Cambridge Institute, Robinson Way, Cambridge, United Kingdom.
Vallejos CA; MRC Human Genetics Unit, Institute of Genetics & Molecular Medicine, University of Edinburgh, Western General Hospital, Edinburgh, United Kingdom.
Matchett KP; Centre for Inflammation Research, The Queen's Medical Research Institute, University of Edinburgh, Little France Crescent, Edinburgh, United Kingdom.
Henderson NC; MRC Human Genetics Unit, Institute of Genetics & Molecular Medicine, University of Edinburgh, Western General Hospital, Edinburgh, United Kingdom.; Centre for Inflammation Research, The Queen's Medical Research Institute, University of Edinburgh, Little France Crescent, Edinburgh, United Kingdom.
Colome-Tatche M; Institute of Computational Biology, Helmholtz Zentrum München, Neuherberg, Germany. .; TUM School of Life Sciences Weihenstephan, Technical University of Munich, Freising, Germany. .; Biomedical Center (BMC), Physiological Chemistry, Faculty of Medicine, LMU Munich, Munich, Germany. .
Martinez-Jimenez CP; Helmholtz Pioneer Campus (HPC), Helmholtz Zentrum München, Neuherberg, Germany. .; TUM School of Medicine, Technical University of Munich, Munich, Germany. .
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Źródło :
Nature communications [Nat Commun] 2021 Jul 12; Vol. 12 (1), pp. 4264. Date of Electronic Publication: 2021 Jul 12.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Ploidies*
Sequence Analysis, RNA*
Single-Cell Analysis*
Liver/*metabolism
Animals ; Biomarkers/metabolism ; Cell Nucleus/metabolism ; Chronic Disease ; Frozen Sections ; Gene Expression Profiling ; Gene Expression Regulation ; Gene Ontology ; Hepatocytes/metabolism ; Liver/pathology ; Liver Diseases/pathology ; Mice, Inbred C57BL ; Regeneration ; Stem Cells/metabolism ; Transcription Factors/metabolism ; Transcription, Genetic
Czasopismo naukowe
Tytuł :
SARS-CoV-2 detection and genomic sequencing from hospital surface samples collected at UC Davis.
Autorzy :
Coil DA; Genome Center, University of California, Davis, California, United States of America.
Albertson T; Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, School of Medicine, University of California, Davis, California, United States of America.
Banerjee S; Department of Medical Microbiology and Immunology, School of Medicine, University of California, Davis, California, United States of America.
Brennan G; Department of Medical Microbiology and Immunology, School of Medicine, University of California, Davis, California, United States of America.
Campbell AJ; Department of Microbiology and Molecular Genetics, College of Biological Sciences, University of California, Davis, California, United States of America.
Cohen SH; Division of Infectious Diseases, Department of Internal Medicine, School of Medicine, University of California, Davis, California, United States of America.
Dandekar S; Department of Medical Microbiology and Immunology, School of Medicine, University of California, Davis, California, United States of America.
Díaz-Muñoz SL; Genome Center, University of California, Davis, California, United States of America.; Department of Microbiology and Molecular Genetics, College of Biological Sciences, University of California, Davis, California, United States of America.
Eisen JA; Genome Center, University of California, Davis, California, United States of America.; Department of Medical Microbiology and Immunology, School of Medicine, University of California, Davis, California, United States of America.; Department of Evolution and Ecology, University of California, Davis, California, United States of America.
Goldstein T; One Health Institute, University of California, Davis, California, United States of America.
Jose IR; Department of Microbiology and Molecular Genetics, College of Biological Sciences, University of California, Davis, California, United States of America.
Juarez M; Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, School of Medicine, University of California, Davis, California, United States of America.
Robinson BA; Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, School of Medicine, University of California, Davis, California, United States of America.
Rothenburg S; Department of Medical Microbiology and Immunology, School of Medicine, University of California, Davis, California, United States of America.
Sandrock C; Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, School of Medicine, University of California, Davis, California, United States of America.
Stoian AMM; Department of Medical Microbiology and Immunology, School of Medicine, University of California, Davis, California, United States of America.
Tompkins DG; Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, School of Medicine, University of California, Davis, California, United States of America.
Tremeau-Bravard A; One Health Institute, University of California, Davis, California, United States of America.
Haczku A; Division of Pulmonary, Critical Care and Sleep Medicine, Department of Internal Medicine, School of Medicine, University of California, Davis, California, United States of America.
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Źródło :
PloS one [PLoS One] 2021 Jun 24; Vol. 16 (6), pp. e0253578. Date of Electronic Publication: 2021 Jun 24 (Print Publication: 2021).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Viral*
Hospitals, Teaching*
Phylogeny*
Sequence Analysis, RNA*
COVID-19/*genetics
SARS-CoV-2/*genetics
Animals ; COVID-19/epidemiology ; COVID-19/transmission ; Chlorocebus aethiops ; Humans ; SARS-CoV-2/isolation & purification ; Vero Cells
Czasopismo naukowe
Tytuł :
Cell landscape atlas for patients with chronic thromboembolic pulmonary hypertension after pulmonary endarterectomy constructed using single-cell RNA sequencing.
Autorzy :
Miao R; Medical Research Center, Beijing Chao-Yang Hospital, Capital Medical University, Beijing 100020, China.; Key Laboratory of Respiratory and Pulmonary Circulation Disorders, Institute of Respiratory Medicine, Beijing 100020, China.
Dong X; Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing 100730, China.
Gong J; Key Laboratory of Respiratory and Pulmonary Circulation Disorders, Institute of Respiratory Medicine, Beijing 100020, China.; Department of Respiratory and Critical Care Medicine, Beijing Chao-Yang Hospital, Capital Medical University, Beijing 100020, China.
Li Y; Department of Echocardiography, Beijing Chao-Yang Hospital, Capital Medical University, Beijing 100020, China.
Guo X; Department of Radiology, Beijing Chao-Yang Hospital, Capital Medical University, Beijing 100020, China.
Wang J; Department of Interventional Radiology, Beijing Chao-Yang Hospital, Capital Medical University, Beijing 100020, China.
Huang Q; Department of Interventional Radiology, Beijing Chao-Yang Hospital, Capital Medical University, Beijing 100020, China.
Wang Y; Department of Pathology, Beijing Chao-Yang Hospital, Capital Medical University, Beijing 100020, China.
Li J; Key Laboratory of Respiratory and Pulmonary Circulation Disorders, Institute of Respiratory Medicine, Beijing 100020, China.; Department of Respiratory and Critical Care Medicine, Beijing Chao-Yang Hospital, Capital Medical University, Beijing 100020, China.
Yang S; Key Laboratory of Respiratory and Pulmonary Circulation Disorders, Institute of Respiratory Medicine, Beijing 100020, China.; Department of Respiratory and Critical Care Medicine, Beijing Chao-Yang Hospital, Capital Medical University, Beijing 100020, China.
Kuang T; Key Laboratory of Respiratory and Pulmonary Circulation Disorders, Institute of Respiratory Medicine, Beijing 100020, China.; Department of Respiratory and Critical Care Medicine, Beijing Chao-Yang Hospital, Capital Medical University, Beijing 100020, China.
Wan J; Key Laboratory of Respiratory and Pulmonary Circulation Disorders, Institute of Respiratory Medicine, Beijing 100020, China.; Department of Pulmonary and Critical Care Medicine, China-Japan Friendship Hospital, Beijing 100029, China.
Liu M; Department of Radiology, China-Japan Friendship Hospital, Beijing 100029, China.
Zhai Z; Key Laboratory of Respiratory and Pulmonary Circulation Disorders, Institute of Respiratory Medicine, Beijing 100020, China.; Department of Pulmonary and Critical Care Medicine, China-Japan Friendship Hospital, Beijing 100029, China.
Zhong J; Heart Center and Beijing Key Laboratory of Hypertension, Beijing Chao-Yang Hospital, Capital Medical University, Beijing 100020, China.
Yang Y; Key Laboratory of Respiratory and Pulmonary Circulation Disorders, Institute of Respiratory Medicine, Beijing 100020, China.; Department of Respiratory and Critical Care Medicine, Beijing Chao-Yang Hospital, Capital Medical University, Beijing 100020, China.
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Źródło :
Aging [Aging (Albany NY)] 2021 Jun 21; Vol. 13 (12), pp. 16485-16499. Date of Electronic Publication: 2021 Jun 21.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Endarterectomy*
Sequence Analysis, RNA*
Single-Cell Analysis*
Hypertension, Pulmonary/*genetics
Hypertension, Pulmonary/*surgery
Thromboembolism/*genetics
Cell Aggregation ; Chronic Disease ; Female ; Fibroblasts/metabolism ; Gene Expression Regulation ; Humans ; Hypertension, Pulmonary/immunology ; Killer Cells, Natural/immunology ; Lung/pathology ; Macrophages/immunology ; Male ; Mast Cells/immunology ; Middle Aged ; Myocytes, Smooth Muscle/metabolism ; T-Lymphocytes/immunology
Czasopismo naukowe
Tytuł :
Single-cell RNA sequencing of human femoral head in vivo .
Autorzy :
Qiu X; Center for System Biology, Data Sciences, and Reproductive Health, School of Basic Medical Science, Central South University, Yuelu, Changsha 410013, China.
Liu Y; Laboratory of Molecular and Statistical Genetics, College of Life Sciences, Human Normal University, Changsha 410081, China.
Shen H; Tulane Center of Biomedical Informatics and Genomics, Deming Department of Medicine, School of Medicine, Tulane University, New Orleans, LA 70112, USA.
Wang Z; Xiangya Nursing School, Central South University, Changsha 410013, China.
Gong Y; Tulane Center of Biomedical Informatics and Genomics, Deming Department of Medicine, School of Medicine, Tulane University, New Orleans, LA 70112, USA.
Yang J; Department of Orthopedics, Xiangya Hospital, Central South University, Changsha 410008, China.
Li X; Laboratory of Molecular and Statistical Genetics, College of Life Sciences, Human Normal University, Changsha 410081, China.
Zhang H; Laboratory of Molecular and Statistical Genetics, College of Life Sciences, Human Normal University, Changsha 410081, China.
Chen Y; Laboratory of Molecular and Statistical Genetics, College of Life Sciences, Human Normal University, Changsha 410081, China.
Zhou C; Laboratory of Molecular and Statistical Genetics, College of Life Sciences, Human Normal University, Changsha 410081, China.
Lv W; Center for System Biology, Data Sciences, and Reproductive Health, School of Basic Medical Science, Central South University, Yuelu, Changsha 410013, China.
Cheng L; Department of Orthopedics and National Clinical Research Center for Geriatric Disorders, Xiangya Hospital, Central South University, Changsha 410008, China.
Hu Y; Department of Orthopedics, Xiangya Hospital, Central South University, Changsha 410008, China.
Li B; Center for System Biology, Data Sciences, and Reproductive Health, School of Basic Medical Science, Central South University, Yuelu, Changsha 410013, China.
Shen W; Center for System Biology, Data Sciences, and Reproductive Health, School of Basic Medical Science, Central South University, Yuelu, Changsha 410013, China.
Zhu X; Center for System Biology, Data Sciences, and Reproductive Health, School of Basic Medical Science, Central South University, Yuelu, Changsha 410013, China.
Tan LJ; Laboratory of Molecular and Statistical Genetics, College of Life Sciences, Human Normal University, Changsha 410081, China.
Xiao HM; Center for System Biology, Data Sciences, and Reproductive Health, School of Basic Medical Science, Central South University, Yuelu, Changsha 410013, China.
Deng HW; Center for System Biology, Data Sciences, and Reproductive Health, School of Basic Medical Science, Central South University, Yuelu, Changsha 410013, China.; Tulane Center of Biomedical Informatics and Genomics, Deming Department of Medicine, School of Medicine, Tulane University, New Orleans, LA 70112, USA.
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Źródło :
Aging [Aging (Albany NY)] 2021 Jun 10; Vol. 13 (11), pp. 15595-15619. Date of Electronic Publication: 2021 Jun 10.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Sequence Analysis, RNA*
Single-Cell Analysis*
Femur Head/*metabolism
B-Lymphocytes/metabolism ; Cell Lineage/genetics ; Gene Expression Profiling ; Gene Ontology ; Gene Regulatory Networks ; Humans ; Monocytes/metabolism ; Osteoblasts/cytology ; Osteoblasts/metabolism ; T-Lymphocytes/metabolism
Czasopismo naukowe
Tytuł :
Separating measurement and expression models clarifies confusion in single-cell RNA sequencing analysis.
Autorzy :
Sarkar A; Department of Human Genetics, University of Chicago, Chicago, IL, USA. .
Stephens M; Department of Human Genetics, University of Chicago, Chicago, IL, USA. .; Department of Statistics, University of Chicago, Chicago, IL, USA. .
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Źródło :
Nature genetics [Nat Genet] 2021 Jun; Vol. 53 (6), pp. 770-777. Date of Electronic Publication: 2021 May 24.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Review
MeSH Terms :
Gene Expression Regulation*
Sequence Analysis, RNA*
Single-Cell Analysis*
Humans ; Models, Genetic ; Poisson Distribution ; Terminology as Topic
Czasopismo naukowe
Tytuł :
Applications of Deep Mutational Scanning in Virology.
Autorzy :
Burton TD; College of Medicine and Public Health, Flinders University, Bedford Park, SA 5042, Australia.
Eyre NS; College of Medicine and Public Health, Flinders University, Bedford Park, SA 5042, Australia.
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Źródło :
Viruses [Viruses] 2021 May 28; Vol. 13 (6). Date of Electronic Publication: 2021 May 28.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms :
High-Throughput Nucleotide Sequencing*
Sequence Analysis, RNA*
Mutation/*genetics
RNA Viruses/*genetics
Computational Biology ; Gene Library ; Genome, Viral/genetics ; RNA Viruses/classification ; RNA Viruses/physiology ; Reverse Genetics ; Viral Proteins/genetics
Czasopismo naukowe
Tytuł :
The Cellular Composition of Bovine Coccygeal Intervertebral Discs: A Comprehensive Single-Cell RNAseq Analysis.
Autorzy :
Calió M; Tissue Engineering for Orthopaedics & Mechanobiology (TOM), Department for BioMedical Research (DBMR), University of Bern, 3008 Bern, Switzerland.; Department of Orthopaedic Surgery and Traumatology, Inselspital, Bern University Hospital, 3010 Bern, Switzerland.; Space Biology Group, Institute of Medical Engineering, School of Engineering and Architecture, Lucerne University of Applied Sciences and Arts, 6052 Hergiswil, Switzerland.
Gantenbein B; Tissue Engineering for Orthopaedics & Mechanobiology (TOM), Department for BioMedical Research (DBMR), University of Bern, 3008 Bern, Switzerland.; Department of Orthopaedic Surgery and Traumatology, Inselspital, Bern University Hospital, 3010 Bern, Switzerland.
Egli M; Space Biology Group, Institute of Medical Engineering, School of Engineering and Architecture, Lucerne University of Applied Sciences and Arts, 6052 Hergiswil, Switzerland.
Poveda L; Functional Genomics Center Zurich, Swiss Federal Institute of Technology, University of Zurich, 8057 Zurich, Switzerland.
Ille F; Space Biology Group, Institute of Medical Engineering, School of Engineering and Architecture, Lucerne University of Applied Sciences and Arts, 6052 Hergiswil, Switzerland.
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Źródło :
International journal of molecular sciences [Int J Mol Sci] 2021 May 06; Vol. 22 (9). Date of Electronic Publication: 2021 May 06.
Typ publikacji :
Journal Article
MeSH Terms :
Sequence Analysis, RNA*
Single-Cell Analysis*
Coccyx/*cytology
Intervertebral Disc/*cytology
Animals ; Annulus Fibrosus/cytology ; Cattle ; Cell Aggregation ; Cell Size ; Gene Expression Profiling ; Gene Expression Regulation ; Gene Ontology ; Nucleus Pulposus/cytology
Czasopismo naukowe
Tytuł :
Characterization of the aromatic profile of purple passion fruit (Passiflora edulis Sims) during ripening by HS-SPME-GC/MS and RNA sequencing.
Autorzy :
Li C; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China; Guangxi Key Laboratory of Fruits and Vegetables Storage-processing Technology, 174 East Daxue Road, 530007 Nanning, China.
Xin M; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China; Guangxi Key Laboratory of Fruits and Vegetables Storage-processing Technology, 174 East Daxue Road, 530007 Nanning, China.
Li L; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China.
He X; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China.
Yi P; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China.
Tang Y; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China.
Li J; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China.
Zheng F; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China.
Liu G; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China.
Sheng J; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China.
Li Z; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China.
Sun J; Agro-food Science and Technology Research Institute, Guangxi Academy of Agricultural Sciences, 174 East Daxue Road, 530007 Nanning, China; Guangxi Key Laboratory of Fruits and Vegetables Storage-processing Technology, 174 East Daxue Road, 530007 Nanning, China.
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Źródło :
Food chemistry [Food Chem] 2021 Sep 01; Vol. 355, pp. 129685. Date of Electronic Publication: 2021 Mar 25.
Typ publikacji :
Journal Article
MeSH Terms :
Gas Chromatography-Mass Spectrometry*
Sequence Analysis, RNA*
Solid Phase Microextraction*
Fruit/*chemistry
Odorants/*analysis
Passiflora/*chemistry
Passiflora/*growth & development
Color ; Gene Expression Profiling ; Passiflora/genetics ; Volatile Organic Compounds/analysis ; Volatile Organic Compounds/isolation & purification
Czasopismo naukowe
Tytuł :
Analysis of a photosynthetic cyanobacterium rich in internal membrane systems via gradient profiling by sequencing (Grad-seq).
Autorzy :
Riediger M; Genetics and Experimental Bioinformatics, Faculty of Biology, University of Freiburg, Schänzlestr. 1, 79104 Freiburg, Germany.
Spät P; Department of Quantitative Proteomics, Interfaculty Institute for Cell Biology, University of Tübingen, Auf der Morgenstelle 15, 72076 Tübingen, Germany.
Bilger R; Genetics and Experimental Bioinformatics, Faculty of Biology, University of Freiburg, Schänzlestr. 1, 79104 Freiburg, Germany.
Voigt K; IT Administration, Institute of Biology 3, Faculty of Biology, University of Freiburg, Schänzlestr. 1, 79104 Freiburg, Germany.
Maček B; Department of Quantitative Proteomics, Interfaculty Institute for Cell Biology, University of Tübingen, Auf der Morgenstelle 15, 72076 Tübingen, Germany.
Hess WR; Genetics and Experimental Bioinformatics, Faculty of Biology, University of Freiburg, Schänzlestr. 1, 79104 Freiburg, Germany.
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Źródło :
The Plant cell [Plant Cell] 2021 Apr 17; Vol. 33 (2), pp. 248-269.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Photosynthesis*/genetics
Sequence Analysis, RNA*
Intracellular Membranes/*metabolism
Synechocystis/*genetics
Bacterial Proteins/metabolism ; Gene Expression Regulation, Bacterial ; Multiprotein Complexes/metabolism ; Phylogeny ; Protein Binding ; Protein Biosynthesis ; Proteome/metabolism ; RNA, Bacterial/genetics ; RNA, Bacterial/metabolism ; RNA, Messenger/genetics ; RNA, Messenger/metabolism ; Ribonucleoproteins/metabolism ; Thylakoids/metabolism ; Toxin-Antitoxin Systems ; Transcriptome/genetics
Czasopismo naukowe
Tytuł :
Airspace Macrophages and Monocytes Exist in Transcriptionally Distinct Subsets in Healthy Adults.
Autorzy :
Mould KJ; Department of Medicine.; Department of Biomedical Research, and.
Moore CM; Department of Pediatrics, National Jewish Health, Denver, Colorado.; Department of Medicine, University of Colorado, Aurora, Colorado; and.
McManus SA; Department of Medicine.
McCubbrey AL; Department of Medicine.; Department of Biomedical Research, and.
McClendon JD; Department of Medicine.
Griesmer CL; Department of Medicine.
Henson PM; Department of Biomedical Research, and.; Department of Biostatistics and Informatics, University of Colorado, Denver, Colorado.
Janssen WJ; Department of Medicine.; Department of Biomedical Research, and.
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Źródło :
American journal of respiratory and critical care medicine [Am J Respir Crit Care Med] 2021 Apr 15; Vol. 203 (8), pp. 946-956.
Typ publikacji :
Comparative Study; Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Expression Profiling*
Sequence Analysis, RNA*
Bronchoalveolar Lavage Fluid/*immunology
Leukocytes, Mononuclear/*immunology
Macrophages, Alveolar/*immunology
Monocytes/*immunology
Pulmonary Alveoli/*immunology
Adult ; Female ; Healthy Volunteers ; Humans ; Male ; Middle Aged ; Sex Factors
Czasopismo naukowe
Tytuł :
Fecal 16S rRNA Gene Sequencing Analysis of Changes in the Gut Microbiota of Rats with Low-Dose Aspirin-Related Intestinal Injury.
Autorzy :
Chi T; Departments of Gastroenterology, Xuanwu Hospital Capital Medical University, Beijing, China.
Zhao Q; Departments of Gastroenterology, Xuanwu Hospital Capital Medical University, Beijing, China.
Wang P; Cardiovascular Center, Xi Yuan Hospital of China Academy of Chinese Medical Sciences, Beijing, China.
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Źródło :
BioMed research international [Biomed Res Int] 2021 Apr 13; Vol. 2021, pp. 8848686. Date of Electronic Publication: 2021 Apr 13 (Print Publication: 2021).
Typ publikacji :
Journal Article
MeSH Terms :
Sequence Analysis, RNA*
Aspirin/*adverse effects
Feces/*microbiology
Gastrointestinal Microbiome/*genetics
Intestines/*injuries
RNA, Ribosomal, 16S/*genetics
Animals ; Biodiversity ; Cluster Analysis ; Dose-Response Relationship, Drug ; Intestinal Mucosa/pathology ; Intestines/pathology ; Male ; Phylogeny ; Principal Component Analysis ; Rats, Sprague-Dawley ; Staining and Labeling ; Tissue Adhesions/pathology ; Ulcer/pathology
Czasopismo naukowe
Tytuł :
Atlas of breast cancer infiltrated B-lymphocytes revealed by paired single-cell RNA-sequencing and antigen receptor profiling.
Autorzy :
Hu Q; National Institute of Biological Sciences, Beijing, China.
Hong Y; National Institute of Biological Sciences, Beijing, China.; Peking University-Tsinghua University-National Institute of Biological Sciences Joint Graduate Program, School of Life Sciences, Peking University, Beijing, China.
Qi P; Xinxiang Central Hospital, Xinxiang, Henan, China.
Lu G; National Institute of Biological Sciences, Beijing, China.
Mai X; National Institute of Biological Sciences, Beijing, China.
Xu S; Xinxiang Central Hospital, Xinxiang, Henan, China.
He X; Xinxiang Central Hospital, Xinxiang, Henan, China.
Guo Y; Xinxiang Central Hospital, Xinxiang, Henan, China.
Gao L; National Institute of Biological Sciences, Beijing, China.
Jing Z; National Institute of Biological Sciences, Beijing, China.
Wang J; National Institute of Biological Sciences, Beijing, China.
Cai T; National Institute of Biological Sciences, Beijing, China.
Zhang Y; National Institute of Biological Sciences, Beijing, China. .; Peking University-Tsinghua University-National Institute of Biological Sciences Joint Graduate Program, School of Life Sciences, Peking University, Beijing, China. .; Tsinghua Institute of Multidisciplinary Biomedical Research, Tsinghua University, Beijing, China. .
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Źródło :
Nature communications [Nat Commun] 2021 Apr 12; Vol. 12 (1), pp. 2186. Date of Electronic Publication: 2021 Apr 12.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Gene Expression Profiling*
Sequence Analysis, RNA*
Single-Cell Analysis*
Breast Neoplasms/*genetics
Breast Neoplasms/*immunology
Lymphocytes, Tumor-Infiltrating/*immunology
Receptors, Antigen/*metabolism
Aged ; Breast Neoplasms/blood ; Female ; Gene Expression Regulation, Neoplastic ; Humans ; Immunoglobulin Heavy Chains/genetics ; Kaplan-Meier Estimate ; Middle Aged ; Transcriptome/genetics
Czasopismo naukowe
Tytuł :
Uncovering transcriptional dark matter via gene annotation independent single-cell RNA sequencing analysis.
Autorzy :
Wang MFZ; Nancy E. and Peter C. Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, 14853, USA.
Mantri M; Nancy E. and Peter C. Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, 14853, USA.
Chou SP; Baker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, NY, 14853, USA.
Scuderi GJ; Nancy E. and Peter C. Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, 14853, USA.
McKellar DW; Nancy E. and Peter C. Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, 14853, USA.
Butcher JT; Nancy E. and Peter C. Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, 14853, USA.
Danko CG; Baker Institute for Animal Health, College of Veterinary Medicine, Cornell University, Ithaca, NY, 14853, USA.
De Vlaminck I; Nancy E. and Peter C. Meinig School of Biomedical Engineering, Cornell University, Ithaca, NY, 14853, USA. .
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Źródło :
Nature communications [Nat Commun] 2021 Apr 12; Vol. 12 (1), pp. 2158. Date of Electronic Publication: 2021 Apr 12.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Molecular Sequence Annotation*
Sequence Analysis, RNA*
Single-Cell Analysis*
Transcription, Genetic*
Animals ; Chick Embryo ; Gene Expression Regulation ; Genetic Markers ; Genome ; Heart/embryology ; Humans ; RNA, Messenger/genetics ; RNA, Messenger/metabolism ; Transcriptome/genetics
Czasopismo naukowe
Tytuł :
Spectrum of splicing variants in disease genes and the ability of RNA analysis to reduce uncertainty in clinical interpretation.
Autorzy :
Truty R; Invitae, 1400 16th St, San Francisco, CA 94103, USA.
Ouyang K; Invitae, 1400 16th St, San Francisco, CA 94103, USA.
Rojahn S; Invitae, 1400 16th St, San Francisco, CA 94103, USA.
Garcia S; Invitae, 1400 16th St, San Francisco, CA 94103, USA.
Colavin A; Invitae, 1400 16th St, San Francisco, CA 94103, USA.
Hamlington B; Invitae, 1400 16th St, San Francisco, CA 94103, USA.
Freivogel M; Invitae, 1400 16th St, San Francisco, CA 94103, USA.
Nussbaum RL; Invitae, 1400 16th St, San Francisco, CA 94103, USA.
Nykamp K; Invitae, 1400 16th St, San Francisco, CA 94103, USA.
Aradhya S; Invitae, 1400 16th St, San Francisco, CA 94103, USA. Electronic address: .
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Źródło :
American journal of human genetics [Am J Hum Genet] 2021 Apr 01; Vol. 108 (4), pp. 696-708. Date of Electronic Publication: 2021 Mar 19.
Typ publikacji :
Journal Article
MeSH Terms :
Diagnostic Techniques and Procedures*
Sequence Analysis, RNA*
Uncertainty*
Alternative Splicing/*genetics
Disease/*genetics
RNA/*analysis
Cohort Studies ; Computer Simulation ; High-Throughput Nucleotide Sequencing ; Humans ; RNA/genetics ; RNA Splice Sites/genetics
Czasopismo naukowe
Tytuł :
Identification of a Gene Prognostic Signature for Oral Squamous Cell Carcinoma by RNA Sequencing and Bioinformatics.
Autorzy :
Zhang YY; Beijing Stomatological Hospital, Capital Medical University, Beijing 100050, China.
Mao MH; Beijing Stomatological Hospital, Capital Medical University, Beijing 100050, China.
Han ZX; Beijing Stomatological Hospital, Capital Medical University, Beijing 100050, China.
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Źródło :
BioMed research international [Biomed Res Int] 2021 Apr 01; Vol. 2021, pp. 6657767. Date of Electronic Publication: 2021 Apr 01 (Print Publication: 2021).
Typ publikacji :
Journal Article
MeSH Terms :
Computational Biology*
Gene Expression Profiling*
Sequence Analysis, RNA*
Carcinoma, Squamous Cell/*genetics
Mouth Neoplasms/*genetics
Carcinoma, Squamous Cell/pathology ; Cluster Analysis ; Female ; Gene Expression Regulation, Neoplastic ; Gene Ontology ; Genetic Association Studies ; Humans ; Logistic Models ; Male ; Middle Aged ; Mouth Neoplasms/pathology ; Multivariate Analysis ; Prognosis ; Protein Interaction Maps/genetics ; ROC Curve ; Squamous Cell Carcinoma of Head and Neck/genetics ; Survival Analysis ; Transcription, Genetic
Czasopismo naukowe
Tytuł :
A Web Server for Designing Molecular Switches Composed of Two Interacting RNAs.
Autorzy :
Taneda A; Graduate School of Science and Technology, Hirosaki University, Hirosaki, Aomori 036-8561, Japan.
Sato K; Department of Biosciences and Informatics, Keio University, 3-14-1 Hiyoshi, Kohoku-ku, Yokohama 223-8522, Japan.
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Źródło :
International journal of molecular sciences [Int J Mol Sci] 2021 Mar 08; Vol. 22 (5). Date of Electronic Publication: 2021 Mar 08.
Typ publikacji :
Journal Article
MeSH Terms :
Algorithms*
Computer Simulation*
RNA*/chemistry
RNA*/genetics
RNA Folding*
Sequence Analysis, RNA*
Software*
Czasopismo naukowe
Tytuł :
Single-cell RNA sequencing reveals the induction of novel myeloid and myeloid-associated cell populations in visceral fat with long-term obesity.
Autorzy :
Harasymowicz NS; Department of Orthopaedic Surgery, Washington University in St. Louis, St. Louis, MO, USA.; Shriners Hospitals for Children, St. Louis, MO, USA.; Center of Regenerative Medicine, Washington University in St. Louis, St. Louis, MO, USA.
Rashidi N; Department of Orthopaedic Surgery, Washington University in St. Louis, St. Louis, MO, USA.; Shriners Hospitals for Children, St. Louis, MO, USA.; Center of Regenerative Medicine, Washington University in St. Louis, St. Louis, MO, USA.; Department of Mechanical Engineering and Materials Science, Washington University in St. Louis, St. Louis, MO, USA.
Savadipour A; Department of Orthopaedic Surgery, Washington University in St. Louis, St. Louis, MO, USA.; Shriners Hospitals for Children, St. Louis, MO, USA.; Center of Regenerative Medicine, Washington University in St. Louis, St. Louis, MO, USA.; Department of Mechanical Engineering and Materials Science, Washington University in St. Louis, St. Louis, MO, USA.
Wu CL; Department of Orthopaedic Surgery, Washington University in St. Louis, St. Louis, MO, USA.; Shriners Hospitals for Children, St. Louis, MO, USA.; Center of Regenerative Medicine, Washington University in St. Louis, St. Louis, MO, USA.
Tang R; Department of Orthopaedic Surgery, Washington University in St. Louis, St. Louis, MO, USA.; Shriners Hospitals for Children, St. Louis, MO, USA.; Center of Regenerative Medicine, Washington University in St. Louis, St. Louis, MO, USA.
Bramley J; Department of Genetics, Washington University in St. Louis, St. Louis, MO, USA.
Buchser W; Department of Genetics, Washington University in St. Louis, St. Louis, MO, USA.
Guilak F; Department of Orthopaedic Surgery, Washington University in St. Louis, St. Louis, MO, USA.; Shriners Hospitals for Children, St. Louis, MO, USA.; Center of Regenerative Medicine, Washington University in St. Louis, St. Louis, MO, USA.; Department of Mechanical Engineering and Materials Science, Washington University in St. Louis, St. Louis, MO, USA.
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Źródło :
FASEB journal : official publication of the Federation of American Societies for Experimental Biology [FASEB J] 2021 Mar; Vol. 35 (3), pp. e21417.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Sequence Analysis, RNA*
Intra-Abdominal Fat/*metabolism
Myeloid Cells/*metabolism
Obesity/*metabolism
Adipose Tissue/metabolism ; Animals ; Inflammation/metabolism ; Macrophages/metabolism ; Male ; Membrane Glycoproteins ; Mice, Inbred C57BL ; Monocytes/metabolism ; Receptors, Immunologic
Czasopismo naukowe
Tytuł :
Randomly primed, strand-switching, MinION-based sequencing for the detection and characterization of cultured RNA viruses.
Autorzy :
Young KT; Department of Pathology, College of Veterinary Medicine, University of Georgia, Athens, GA.
Lahmers KK; Department of Biomedical Sciences & Pathobiology, VA-MD College of Veterinary Medicine, Virginia Tech University, Blacksburg, VA.
Sellers HS; Poultry Diagnostic and Research Center, Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA.
Stallknecht DE; Southeastern Cooperative Wildlife Disease Study Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA.
Poulson RL; Southeastern Cooperative Wildlife Disease Study Department of Population Health, College of Veterinary Medicine, University of Georgia, Athens, GA.
Saliki JT; Athens Veterinary Diagnostic Laboratory, College of Veterinary Medicine, University of Georgia, Athens, GA.
Tompkins SM; Center for Vaccines and Immunology, Department of Infectious Diseases, College of Veterinary Medicine, University of Georgia, Athens, GA.
Padykula I; Center for Vaccines and Immunology, Department of Infectious Diseases, College of Veterinary Medicine, University of Georgia, Athens, GA.
Siepker C; Department of Pathology, College of Veterinary Medicine, University of Georgia, Athens, GA.
Howerth EW; Department of Pathology, College of Veterinary Medicine, University of Georgia, Athens, GA.
Todd M; Department of Biomedical Sciences & Pathobiology, VA-MD College of Veterinary Medicine, Virginia Tech University, Blacksburg, VA.
Stanton JB; Department of Pathology, College of Veterinary Medicine, University of Georgia, Athens, GA.
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Źródło :
Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc [J Vet Diagn Invest] 2021 Mar; Vol. 33 (2), pp. 202-215. Date of Electronic Publication: 2020 Dec 24.
Typ publikacji :
Journal Article
MeSH Terms :
High-Throughput Nucleotide Sequencing/*veterinary
RNA Viruses/*isolation & purification
Sequence Analysis, RNA/*veterinary
Whole Genome Sequencing/*veterinary
High-Throughput Nucleotide Sequencing/methods ; Sequence Analysis, RNA/methods ; Whole Genome Sequencing/methods
Czasopismo naukowe
Tytuł :
Real-time, MinION-based, amplicon sequencing for lineage typing of infectious bronchitis virus from upper respiratory samples.
Autorzy :
Butt SL; Department of Pathology, University of Georgia, Athens, GA.
Erwood EC; Department of Pathology, University of Georgia, Athens, GA.
Zhang J; Department of Pathology, University of Georgia, Athens, GA.
Sellers HS; Poultry Diagnostic & Research Center, Department of Population Health, University of Georgia, Athens, GA.
Young K; Department of Pathology, University of Georgia, Athens, GA.
Lahmers KK; Department of Biomedical Sciences & Pathobiology, VA-MD College of Veterinary Medicine, Virginia Polytechnical Institute and State University, Blacksburg, VA.; College of Veterinary Medicine, University of Georgia, Athens, GA.
Stanton JB; Department of Pathology, University of Georgia, Athens, GA.
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Źródło :
Journal of veterinary diagnostic investigation : official publication of the American Association of Veterinary Laboratory Diagnosticians, Inc [J Vet Diagn Invest] 2021 Mar; Vol. 33 (2), pp. 179-190. Date of Electronic Publication: 2020 Mar 05.
Typ publikacji :
Journal Article
MeSH Terms :
Chickens*
Coronavirus Infections/*veterinary
Infectious bronchitis virus/*isolation & purification
Poultry Diseases/*diagnosis
Sequence Analysis, RNA/*veterinary
Spike Glycoprotein, Coronavirus/*analysis
Animals ; Coronavirus Infections/diagnosis ; Coronavirus Infections/virology ; Poultry Diseases/virology ; Sequence Analysis, RNA/methods
Czasopismo naukowe

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