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Tytuł:
Massive RNA sequencing effort proposed.
Autorzy:
Pennisi E
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Źródło:
Science (New York, N.Y.) [Science] 2024 Mar 29; Vol. 383 (6690), pp. 1398. Date of Electronic Publication: 2024 Mar 28.
Typ publikacji:
Wiadomości
MeSH Terms:
Sequence Analysis, RNA*/economics
RNA*/genetics
RNA*/metabolism
Capital Financing*
Human Genome Project/economics ; United States ; Humans ; mRNA Vaccines/genetics ; Disease
Periodyk
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Cell-type annotation with accurate unseen cell-type identification using multiple references.
Autorzy:
Xiong YX; School of Mathematics and Statistics, Central China Normal University, Wuhan, China.; Key Laboratory of Nonlinear Analysis & Applications (Ministry of Education), Central China Normal University, Wuhan, China.
Wang MG; School of Mathematics and Statistics, Central China Normal University, Wuhan, China.; Key Laboratory of Nonlinear Analysis & Applications (Ministry of Education), Central China Normal University, Wuhan, China.
Chen L; State Key Laboratory of Cell Biology, Shanghai Institute of Biochemistry and Cell Biology, Center for Excellence in Molecular Cell Science, Chinese Academy of Sciences, Shanghai, China.; School of Life Science and Technology, ShanghaiTech University, Shanghai, China.; Key Laboratory of Systems Health Science of Zhejiang Province, Hangzhou Institute for Advanced Study, University of Chinese Academy of Sciences, Chinese Academy of Sciences, Hangzhou, China.; Guangdong Institute of Intelligence Science and Technology, Hengqin, Zhuhai, Guangdong, China.
Zhang XF; School of Mathematics and Statistics, Central China Normal University, Wuhan, China.; Key Laboratory of Nonlinear Analysis & Applications (Ministry of Education), Central China Normal University, Wuhan, China.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2023 Jun 28; Vol. 19 (6), pp. e1011261. Date of Electronic Publication: 2023 Jun 28 (Print Publication: 2023).
Typ publikacji:
Dataset; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Single-Cell Analysis*/methods
Sequence Analysis, RNA*/methods
Humans ; COVID-19/diagnosis ; Software
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Cellular senescence and metabolic reprogramming model based on bulk/single-cell RNA sequencing reveals PTGER4 as a therapeutic target for ccRCC.
Autorzy:
Zhou L; Department of Urology, First Affiliated Hospital of Zhengzhou University, 450052, Zhengzhou, Henan Province, China. .; Unit of Day Surgery Center, First Affiliated Hospital of Zhengzhou University, 450052, Zhengzhou, Henan Province, China. .
Zeng Y; Department of Urology, First Affiliated Hospital of Zhengzhou University, 450052, Zhengzhou, Henan Province, China.; Department of Urology, Zhengzhou Key Laboratory for Molecular Biology of Urological Tumor Research, Henan Institute of Urology, First Affiliated Hospital of Zhengzhou University, 450052, Zhengzhou, Henan Province, China.
Liu Y; Department of Urology, First Affiliated Hospital of Zhengzhou University, 450052, Zhengzhou, Henan Province, China.; Unit of Day Surgery Center, First Affiliated Hospital of Zhengzhou University, 450052, Zhengzhou, Henan Province, China.
Du K; Department of Urology, First Affiliated Hospital of Zhengzhou University, 450052, Zhengzhou, Henan Province, China.; Unit of Day Surgery Center, First Affiliated Hospital of Zhengzhou University, 450052, Zhengzhou, Henan Province, China.
Luo Y; Department of Urology, First Affiliated Hospital of Zhengzhou University, 450052, Zhengzhou, Henan Province, China.; Unit of Day Surgery Center, First Affiliated Hospital of Zhengzhou University, 450052, Zhengzhou, Henan Province, China.
Dai Y; Department of Urology, First Affiliated Hospital of Zhengzhou University, 450052, Zhengzhou, Henan Province, China.; Department of Urology, Zhengzhou Key Laboratory for Molecular Biology of Urological Tumor Research, Henan Institute of Urology, First Affiliated Hospital of Zhengzhou University, 450052, Zhengzhou, Henan Province, China.
Pan W; Department of Urology, First Affiliated Hospital of Zhengzhou University, 450052, Zhengzhou, Henan Province, China.; Unit of Day Surgery Center, First Affiliated Hospital of Zhengzhou University, 450052, Zhengzhou, Henan Province, China.
Zhang L; Department of Urology, First Affiliated Hospital of Zhengzhou University, 450052, Zhengzhou, Henan Province, China.; Unit of Day Surgery Center, First Affiliated Hospital of Zhengzhou University, 450052, Zhengzhou, Henan Province, China.
Zhang L; Department of Thoracic Surgery, The First Affiliated Hospital of Zhengzhou University, 450052, Zhengzhou, Henan Province, China. zhanglei_.
Tian F; Department of Pediatrics, The First Affiliated Hospital of Zhengzhou University, 450052, Zhengzhou, Henan Province, China. .
Gu C; Department of Urology, First Affiliated Hospital of Zhengzhou University, 450052, Zhengzhou, Henan Province, China. .; Unit of Day Surgery Center, First Affiliated Hospital of Zhengzhou University, 450052, Zhengzhou, Henan Province, China. .
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Źródło:
BMC cancer [BMC Cancer] 2024 Apr 11; Vol. 24 (1), pp. 451. Date of Electronic Publication: 2024 Apr 11.
Typ publikacji:
Journal Article
MeSH Terms:
Carcinoma, Renal Cell*/genetics
Carcinoma*
Kidney Neoplasms*
Humans ; Metabolic Reprogramming ; Cellular Senescence/genetics ; Sequence Analysis, RNA ; Tumor Microenvironment/genetics ; Receptors, Prostaglandin E, EP4 Subtype
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Single-cell RNA sequencing explores the evolution of the ecosystem from leukoplakia to head and neck squamous cell carcinoma.
Autorzy:
Wang H; Department of Oral and Maxillofacial Surgery, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, China.
Guan Z; Department of Stomatology, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, China.
Zheng L; Department of Oral and Maxillofacial Surgery, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, China. .
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Źródło:
Scientific reports [Sci Rep] 2024 Apr 06; Vol. 14 (1), pp. 8097. Date of Electronic Publication: 2024 Apr 06.
Typ publikacji:
Journal Article
MeSH Terms:
Ecosystem*
Head and Neck Neoplasms*/genetics
Humans ; Squamous Cell Carcinoma of Head and Neck/genetics ; Leukoplakia ; Sequence Analysis, RNA ; Prognosis ; Tumor Microenvironment/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Metacell-based differential expression analysis identifies cell type specific temporal gene response programs in COVID-19 patient PBMCs.
Autorzy:
O'Leary K; Department of Genetics, Albert Einstein College of Medicine, Bronx, NY, USA.
Zheng D; Department of Genetics, Albert Einstein College of Medicine, Bronx, NY, USA. .; Department of Neurology, Albert Einstein College of Medicine, Bronx, NY, USA. .; Department of Neuroscience, Albert Einstein College of Medicine, Bronx, NY, USA. .
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Źródło:
NPJ systems biology and applications [NPJ Syst Biol Appl] 2024 Apr 05; Vol. 10 (1), pp. 36. Date of Electronic Publication: 2024 Apr 05.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Expression Profiling*/methods
COVID-19*/genetics
Humans ; Leukocytes, Mononuclear/metabolism ; Sequence Analysis, RNA/methods ; SARS-CoV-2
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
CITEViz: interactively classify cell populations in CITE-Seq via a flow cytometry-like gating workflow using R-Shiny.
Autorzy:
Kong GL; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health and Science University, 3181 SW Sam Jackson Pk. Rd., KR-HEM, Portland, OR, 97239, USA.
Nguyen TT; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health and Science University, 3181 SW Sam Jackson Pk. Rd., KR-HEM, Portland, OR, 97239, USA.
Rosales WK; Earle A. Chiles Research Institute, Providence, Portland, OR, 97213, USA.
Panikar AD; Knight Campus Graduate Internship Program - Bioinformatics, University of Oregon, Eugene, OR, 97403, USA.
Cheney JHW; Knight Campus Graduate Internship Program - Bioinformatics, University of Oregon, Eugene, OR, 97403, USA.
Lusardi TA; Cancer Early Detection Advanced Research, Oregon Health and Science University, Portland, OR, 97238, USA.
Yashar WM; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health and Science University, 3181 SW Sam Jackson Pk. Rd., KR-HEM, Portland, OR, 97239, USA.; Department of Biomedical Engineering, Oregon Health and Science University, Portland, USA.
Curtiss BM; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health and Science University, 3181 SW Sam Jackson Pk. Rd., KR-HEM, Portland, OR, 97239, USA.
Carratt SA; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health and Science University, 3181 SW Sam Jackson Pk. Rd., KR-HEM, Portland, OR, 97239, USA.
Braun TP; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health and Science University, 3181 SW Sam Jackson Pk. Rd., KR-HEM, Portland, OR, 97239, USA. .; Division of Hematology and Medical Oncology, Oregon Health and Science University, Portland, USA. .
Maxson JE; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health and Science University, 3181 SW Sam Jackson Pk. Rd., KR-HEM, Portland, OR, 97239, USA. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Apr 02; Vol. 25 (1), pp. 142. Date of Electronic Publication: 2024 Apr 02.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Leukocytes, Mononuclear*
Humans ; Sequence Analysis, RNA/methods ; Workflow ; Flow Cytometry ; Membrane Proteins ; Single-Cell Analysis/methods ; Gene Expression Profiling/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Procrustes is a machine-learning approach that removes cross-platform batch effects from clinical RNA sequencing data.
Autorzy:
Kotlov N; BostonGene, Corp., Waltham, MA, 02453, USA.
Shaposhnikov K; BostonGene, Corp., Waltham, MA, 02453, USA.
Tazearslan C; BostonGene, Corp., Waltham, MA, 02453, USA.
Chasse M; BostonGene, Corp., Waltham, MA, 02453, USA.
Baisangurov A; BostonGene, Corp., Waltham, MA, 02453, USA.
Podsvirova S; BostonGene, Corp., Waltham, MA, 02453, USA.
Fernandez D; BostonGene, Corp., Waltham, MA, 02453, USA.
Abdou M; BostonGene, Corp., Waltham, MA, 02453, USA.
Kaneunyenye L; BostonGene, Corp., Waltham, MA, 02453, USA.
Morgan K; BostonGene, Corp., Waltham, MA, 02453, USA.
Cheremushkin I; BostonGene, Corp., Waltham, MA, 02453, USA.
Zemskiy P; BostonGene, Corp., Waltham, MA, 02453, USA.
Chelushkin M; BostonGene, Corp., Waltham, MA, 02453, USA.
Sorokina M; BostonGene, Corp., Waltham, MA, 02453, USA.
Belova E; BostonGene, Corp., Waltham, MA, 02453, USA.
Khorkova S; BostonGene, Corp., Waltham, MA, 02453, USA.
Lozinsky Y; BostonGene, Corp., Waltham, MA, 02453, USA.
Nuzhdina K; BostonGene, Corp., Waltham, MA, 02453, USA.
Vasileva E; BostonGene, Corp., Waltham, MA, 02453, USA.
Kravchenko D; BostonGene, Corp., Waltham, MA, 02453, USA.
Suryamohan K; BostonGene, Corp., Waltham, MA, 02453, USA.
Nomie K; BostonGene, Corp., Waltham, MA, 02453, USA.
Curran J; BostonGene, Corp., Waltham, MA, 02453, USA.
Fowler N; BostonGene, Corp., Waltham, MA, 02453, USA. .
Bagaev A; BostonGene, Corp., Waltham, MA, 02453, USA.
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Źródło:
Communications biology [Commun Biol] 2024 Mar 30; Vol. 7 (1), pp. 392. Date of Electronic Publication: 2024 Mar 30.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Expression Profiling*/methods
RNA*/genetics
Humans ; Tissue Fixation/methods ; Sequence Analysis, RNA/methods ; Machine Learning
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Curare and GenExVis: a versatile toolkit for analyzing and visualizing RNA-Seq data.
Autorzy:
Blumenkamp P; Bioinformatics and Systems Biology, Justus Liebig University Giessen, 35392, Giessen, Germany. .
Pfister M; Bioinformatics and Systems Biology, Justus Liebig University Giessen, 35392, Giessen, Germany.
Diedrich S; Bioinformatics and Systems Biology, Justus Liebig University Giessen, 35392, Giessen, Germany.
Brinkrolf K; Bioinformatics and Systems Biology, Justus Liebig University Giessen, 35392, Giessen, Germany.
Jaenicke S; Bioinformatics and Systems Biology, Justus Liebig University Giessen, 35392, Giessen, Germany.
Goesmann A; Bioinformatics and Systems Biology, Justus Liebig University Giessen, 35392, Giessen, Germany.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Mar 29; Vol. 25 (1), pp. 138. Date of Electronic Publication: 2024 Mar 29.
Typ publikacji:
Journal Article
MeSH Terms:
Curare*
RNA-Seq ; Reproducibility of Results ; Sequence Analysis, RNA/methods ; Transcriptome ; Software ; High-Throughput Nucleotide Sequencing/methods ; Gene Expression Profiling/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Analysis of the effect of CCR7 on the microenvironment of mouse oral squamous cell carcinoma by single-cell RNA sequencing technology.
Autorzy:
Wang Z; Department of Oral Maxillofacial-Head and Neck Surgery, School and Hospital of Stomatology, China Medical University, Liaoning Provincial Key Laboratory of Oral Diseases, 117 Nanjing North Road, Heping District, Shenyang, Liaoning, 110002, People's Republic of China.
Kirkwood KL; Department of Oral Biology, School of Dental Medicine, University at Buffalo, NY, Buffalo, 14214-8006, USA.
Wang Y; Department of Oral Maxillofacial-Head and Neck Surgery, School and Hospital of Stomatology, China Medical University, Liaoning Provincial Key Laboratory of Oral Diseases, 117 Nanjing North Road, Heping District, Shenyang, Liaoning, 110002, People's Republic of China.
Du W; Department of Oral Maxillofacial-Head and Neck Surgery, School and Hospital of Stomatology, China Medical University, Liaoning Provincial Key Laboratory of Oral Diseases, 117 Nanjing North Road, Heping District, Shenyang, Liaoning, 110002, People's Republic of China.
Lin S; Department of Oral Maxillofacial-Head and Neck Surgery, School and Hospital of Stomatology, China Medical University, Liaoning Provincial Key Laboratory of Oral Diseases, 117 Nanjing North Road, Heping District, Shenyang, Liaoning, 110002, People's Republic of China.
Zhou W; Department of Oral Maxillofacial-Head and Neck Surgery, School and Hospital of Stomatology, China Medical University, Liaoning Provincial Key Laboratory of Oral Diseases, 117 Nanjing North Road, Heping District, Shenyang, Liaoning, 110002, People's Republic of China.
Yan C; Department of Oral Maxillofacial-Head and Neck Surgery, School and Hospital of Stomatology, China Medical University, Liaoning Provincial Key Laboratory of Oral Diseases, 117 Nanjing North Road, Heping District, Shenyang, Liaoning, 110002, People's Republic of China.
Gao J; Department of Oral Maxillofacial-Head and Neck Surgery, School and Hospital of Stomatology, China Medical University, Liaoning Provincial Key Laboratory of Oral Diseases, 117 Nanjing North Road, Heping District, Shenyang, Liaoning, 110002, People's Republic of China.
Li Z; Department of Oral Maxillofacial-Head and Neck Surgery, School and Hospital of Stomatology, China Medical University, Liaoning Provincial Key Laboratory of Oral Diseases, 117 Nanjing North Road, Heping District, Shenyang, Liaoning, 110002, People's Republic of China.
Sun C; Department of Oral Maxillofacial-Head and Neck Surgery, School and Hospital of Stomatology, China Medical University, Liaoning Provincial Key Laboratory of Oral Diseases, 117 Nanjing North Road, Heping District, Shenyang, Liaoning, 110002, People's Republic of China.
Liu F; Department of Oral Maxillofacial-Head and Neck Surgery, School and Hospital of Stomatology, China Medical University, Liaoning Provincial Key Laboratory of Oral Diseases, 117 Nanjing North Road, Heping District, Shenyang, Liaoning, 110002, People's Republic of China. .
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Źródło:
Journal of experimental & clinical cancer research : CR [J Exp Clin Cancer Res] 2024 Mar 27; Vol. 43 (1), pp. 94. Date of Electronic Publication: 2024 Mar 27.
Typ publikacji:
Journal Article
MeSH Terms:
Carcinoma, Squamous Cell*/pathology
Head and Neck Neoplasms*
Mouth Neoplasms*/pathology
Animals ; Mice ; Cell Line, Tumor ; Endothelial Cells/metabolism ; Receptors, CCR7/genetics ; Sequence Analysis, RNA ; Squamous Cell Carcinoma of Head and Neck ; Tumor Microenvironment/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Comparative study on differential expression analysis methods for single-cell RNA sequencing data with small biological replicates: Based on single-cell transcriptional data of PBMCs from COVID-19 severe patients.
Autorzy:
Xue J; Department of Statistics, School of Economics, Hangzhou Dianzi University, Hangzhou, China.
Zhou X; Department of Statistics, School of Economics, Hangzhou Dianzi University, Hangzhou, China.
Yang J; Department of Statistics, School of Economics, Hangzhou Dianzi University, Hangzhou, China.
Niu A; Department of Statistics, School of Economics, Hangzhou Dianzi University, Hangzhou, China.
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Źródło:
PloS one [PLoS One] 2024 Mar 27; Vol. 19 (3), pp. e0299358. Date of Electronic Publication: 2024 Mar 27 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Software*
COVID-19*/genetics
Humans ; Gene Expression Profiling/methods ; Sequence Analysis, RNA/methods ; Algorithms ; Single-Cell Analysis/methods ; Cluster Analysis
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Single-cell RNA sequencing reveals the immune features and viral tropism in the central nervous system of mice infected with Japanese encephalitis virus.
Autorzy:
Yang L; National Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, 430070, Hubei, China.; Frontiers Science Center for Animal Breeding and Sustainable Production, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, 430070, Hubei, People's Republic of China.; Hubei Hongshan Laboratory, Wuhan, 430070, Hubei, People's Republic of China.; The Cooperative Innovation Center for Sustainable Pig Production, Huazhong Agricultural University, Wuhan, Hubei, China.
Xiong J; National Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, 430070, Hubei, China.; Frontiers Science Center for Animal Breeding and Sustainable Production, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, 430070, Hubei, People's Republic of China.; Hubei Hongshan Laboratory, Wuhan, 430070, Hubei, People's Republic of China.; The Cooperative Innovation Center for Sustainable Pig Production, Huazhong Agricultural University, Wuhan, Hubei, China.
Liu Y; National Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, 430070, Hubei, China.; Frontiers Science Center for Animal Breeding and Sustainable Production, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, 430070, Hubei, People's Republic of China.; Hubei Hongshan Laboratory, Wuhan, 430070, Hubei, People's Republic of China.; The Cooperative Innovation Center for Sustainable Pig Production, Huazhong Agricultural University, Wuhan, Hubei, China.
Liu Y; National Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, 430070, Hubei, China.; Frontiers Science Center for Animal Breeding and Sustainable Production, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, 430070, Hubei, People's Republic of China.; Hubei Hongshan Laboratory, Wuhan, 430070, Hubei, People's Republic of China.; The Cooperative Innovation Center for Sustainable Pig Production, Huazhong Agricultural University, Wuhan, Hubei, China.
Wang X; National Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, 430070, Hubei, China.; Frontiers Science Center for Animal Breeding and Sustainable Production, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, 430070, Hubei, People's Republic of China.; Hubei Hongshan Laboratory, Wuhan, 430070, Hubei, People's Republic of China.; The Cooperative Innovation Center for Sustainable Pig Production, Huazhong Agricultural University, Wuhan, Hubei, China.
Si Y; National Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, 430070, Hubei, China.; Frontiers Science Center for Animal Breeding and Sustainable Production, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, 430070, Hubei, People's Republic of China.; Hubei Hongshan Laboratory, Wuhan, 430070, Hubei, People's Republic of China.; The Cooperative Innovation Center for Sustainable Pig Production, Huazhong Agricultural University, Wuhan, Hubei, China.
Zhu B; National Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, 430070, Hubei, China.; Frontiers Science Center for Animal Breeding and Sustainable Production, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, 430070, Hubei, People's Republic of China.; Hubei Hongshan Laboratory, Wuhan, 430070, Hubei, People's Republic of China.; The Cooperative Innovation Center for Sustainable Pig Production, Huazhong Agricultural University, Wuhan, Hubei, China.
Chen H; National Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, 430070, Hubei, China.; Frontiers Science Center for Animal Breeding and Sustainable Production, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, 430070, Hubei, People's Republic of China.; Hubei Hongshan Laboratory, Wuhan, 430070, Hubei, People's Republic of China.; The Cooperative Innovation Center for Sustainable Pig Production, Huazhong Agricultural University, Wuhan, Hubei, China.
Cao S; National Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, 430070, Hubei, China. .; Frontiers Science Center for Animal Breeding and Sustainable Production, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, 430070, Hubei, People's Republic of China. .; Hubei Hongshan Laboratory, Wuhan, 430070, Hubei, People's Republic of China. .; The Cooperative Innovation Center for Sustainable Pig Production, Huazhong Agricultural University, Wuhan, Hubei, China. .
Ye J; National Key Laboratory of Agricultural Microbiology, Huazhong Agricultural University, Wuhan, 430070, Hubei, China. .; Frontiers Science Center for Animal Breeding and Sustainable Production, College of Veterinary Medicine, Huazhong Agricultural University, Wuhan, 430070, Hubei, People's Republic of China. .; Hubei Hongshan Laboratory, Wuhan, 430070, Hubei, People's Republic of China. .; The Cooperative Innovation Center for Sustainable Pig Production, Huazhong Agricultural University, Wuhan, Hubei, China. .
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Źródło:
Journal of neuroinflammation [J Neuroinflammation] 2024 Mar 26; Vol. 21 (1), pp. 76. Date of Electronic Publication: 2024 Mar 26.
Typ publikacji:
Journal Article
MeSH Terms:
Encephalitis Virus, Japanese*
Encephalitis Viruses, Japanese*
Encephalitis, Japanese*/pathology
Mice ; Animals ; Viral Tropism ; Central Nervous System/pathology ; Inflammation ; Sequence Analysis, RNA
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Bulk RNA sequencing for analysis of post COVID-19 condition in adolescents and young adults.
Autorzy:
Sommen SL; Department of Pediatrics, Akershus University Hospital, Lørenskog, Norway.; University of Oslo, Oslo, Norway.
Zhao Z; Oslo Centre for Biostatistics and Epidemiology (OCBE), Institute of Basic Medical Sciences, Faculty of Medicine, University of Oslo, Oslo, Norway.
Segtnan S; University of Oslo, Oslo, Norway.
Stiansen-Sonerud T; Department of Pediatrics, Akershus University Hospital, Lørenskog, Norway.; Department of Clinical Molecular Biology (EpiGen), University of Oslo and Akershus University Hospital, Lørenskog, Norway.
Selvakumar J; Department of Pediatrics, Akershus University Hospital, Lørenskog, Norway.; Institute of Clinical Medicine, Faculty of Medicine, University of Oslo, Oslo, Norway.
Beier Havdal L; Department of Pediatrics, Akershus University Hospital, Lørenskog, Norway.
Gjerstad J; Department of Behavioural Sciences, Faculty of Health Sciences, Oslo Metropolitan University, Oslo, Norway.
Wyller VBB; Department of Pediatrics, Akershus University Hospital, Lørenskog, Norway.; Institute of Clinical Medicine, Faculty of Medicine, University of Oslo, Oslo, Norway.
Lund Berven L; Department of Pediatrics, Akershus University Hospital, Lørenskog, Norway. .
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Źródło:
Journal of translational medicine [J Transl Med] 2024 Mar 26; Vol. 22 (1), pp. 312. Date of Electronic Publication: 2024 Mar 26.
Typ publikacji:
Journal Article
MeSH Terms:
COVID-19*
Humans ; Adolescent ; Young Adult ; SARS-CoV-2 ; Prospective Studies ; Post-Acute COVID-19 Syndrome ; Sequence Analysis, RNA ; Chronic Disease ; Interferons
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Single-cell RNA sequencing unveils tumor heterogeneity and immune microenvironment between subungual and plantar melanoma.
Autorzy:
Wang P; Fourth Clinical College, Zhejiang Chinese Medical University, Hangzhou, China.
Ma Y; Department of Dermatology, Hangzhou Third People's Hospital, Hangzhou, China.
Zhao Y; Fourth Clinical College, Zhejiang Chinese Medical University, Hangzhou, China.
Li Y; Research Center, Shanghai Yeslab Biotechnology, Shanghai, China.
Tang C; Fourth Clinical College, Zhejiang Chinese Medical University, Hangzhou, China.
Wang S; Fourth Clinical College, Zhejiang Chinese Medical University, Hangzhou, China.
Jin S; Fourth Clinical College, Zhejiang Chinese Medical University, Hangzhou, China.
Wang J; Department of Dermatology, Hangzhou Third People's Hospital, Hangzhou, China.
Zhu M; Department of Dermatology, Hangzhou Third People's Hospital, Hangzhou, China.
Xie B; Department of Dermatology, Hangzhou Third People's Hospital, Hangzhou, China.
Wang P; Department of Dermatology, Hangzhou Third People's Hospital, Hangzhou, China. .
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Źródło:
Scientific reports [Sci Rep] 2024 Mar 25; Vol. 14 (1), pp. 7039. Date of Electronic Publication: 2024 Mar 25.
Typ publikacji:
Journal Article
MeSH Terms:
Melanoma*/pathology
Skin Neoplasms*/pathology
Nail Diseases*/pathology
Humans ; Melanocytes/metabolism ; Sequence Analysis, RNA ; Tumor Microenvironment/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Single-cell RNA sequencing reveals recruitment of the M2-like CCL8 macrophages in Lewis lung carcinoma-bearing mice following hypofractionated radiotherapy.
Autorzy:
Yang H; School of Medicine, Chongqing University, Chongqing, 400044, China.
Lei Z; School of Medicine, Chongqing University, Chongqing, 400044, China.
He J; School of Medicine, Chongqing University, Chongqing, 400044, China.
Zhang L; School of Medicine, Chongqing University, Chongqing, 400044, China.
Lai T; Radiation Oncology Center, Chongqing University Cancer Hospital, No. 181 Hanyu Road, Shapingba District, Chongqing, 400030, China.
Zhou L; Radiation Oncology Center, Chongqing University Cancer Hospital, No. 181 Hanyu Road, Shapingba District, Chongqing, 400030, China.
Wang N; School of Medicine, Chongqing University, Chongqing, 400044, China.
Tang Z; Radiation Oncology Center, Chongqing University Cancer Hospital, No. 181 Hanyu Road, Shapingba District, Chongqing, 400030, China.
Sui J; Radiation Oncology Center, Chongqing University Cancer Hospital, No. 181 Hanyu Road, Shapingba District, Chongqing, 400030, China. .
Wu Y; Radiation Oncology Center, Chongqing University Cancer Hospital, No. 181 Hanyu Road, Shapingba District, Chongqing, 400030, China. .
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Źródło:
Journal of translational medicine [J Transl Med] 2024 Mar 25; Vol. 22 (1), pp. 306. Date of Electronic Publication: 2024 Mar 25.
Typ publikacji:
Journal Article
MeSH Terms:
Carcinoma, Lewis Lung*/radiotherapy
Carcinoma, Lewis Lung*/pathology
Macrophages*/metabolism
Animals ; Mice ; Cell Line, Tumor ; Indazoles/pharmacology ; Propionates/pharmacology ; Sequence Analysis, RNA ; Tumor Microenvironment/genetics ; Single-Cell Analysis ; Chemokine CCL8
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Immunological profile of lactylation-related genes in Crohn's disease: a comprehensive analysis based on bulk and single-cell RNA sequencing data.
Autorzy:
Wu J; Department of Gastroenterology, Zhongshan Hospital of Xiamen University, School of Medicine, Xiamen University, Xiamen, 361004, Fujian, People's Republic of China.; Institute for Microbial Ecology, School of Medicine, Xiamen University, Xiamen, 361004, Fujian, People's Republic of China.; Department of Digestive Disease, School of Medicine, Xiamen University, Xiamen, 361004, Fujian, People's Republic of China.
Lv Y; Institute for Microbial Ecology, School of Medicine, Xiamen University, Xiamen, 361004, Fujian, People's Republic of China.; Department of Digestive Disease, School of Medicine, Xiamen University, Xiamen, 361004, Fujian, People's Republic of China.
Hao P; Institute for Microbial Ecology, School of Medicine, Xiamen University, Xiamen, 361004, Fujian, People's Republic of China.; Department of Digestive Disease, School of Medicine, Xiamen University, Xiamen, 361004, Fujian, People's Republic of China.
Zhang Z; Institute for Microbial Ecology, School of Medicine, Xiamen University, Xiamen, 361004, Fujian, People's Republic of China.; Department of Digestive Disease, School of Medicine, Xiamen University, Xiamen, 361004, Fujian, People's Republic of China.
Zheng Y; Institute for Microbial Ecology, School of Medicine, Xiamen University, Xiamen, 361004, Fujian, People's Republic of China.; Department of Digestive Disease, School of Medicine, Xiamen University, Xiamen, 361004, Fujian, People's Republic of China.
Chen E; Department of Gastroenterology, Zhongshan Hospital of Xiamen University, School of Medicine, Xiamen University, Xiamen, 361004, Fujian, People's Republic of China. .; Institute for Microbial Ecology, School of Medicine, Xiamen University, Xiamen, 361004, Fujian, People's Republic of China. .
Fan Y; Department of Gastroenterology, Zhongshan Hospital of Xiamen University, School of Medicine, Xiamen University, Xiamen, 361004, Fujian, People's Republic of China. .; Department of Digestive Disease, School of Medicine, Xiamen University, Xiamen, 361004, Fujian, People's Republic of China. .
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Źródło:
Journal of translational medicine [J Transl Med] 2024 Mar 23; Vol. 22 (1), pp. 300. Date of Electronic Publication: 2024 Mar 23.
Typ publikacji:
Journal Article
MeSH Terms:
Crohn Disease*/genetics
Humans ; Databases, Factual ; Lactic Acid ; Sequence Analysis, RNA
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Single-cell RNA sequencing integrated with bulk RNA sequencing analysis identifies a tumor immune microenvironment-related lncRNA signature in lung adenocarcinoma.
Autorzy:
Ren Y; Department of Interventional Radiology, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, Henan, China.; Department of Respiratory and Critical Care Medicine, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, Henan, China.
Wu R; Department of Respiratory and Critical Care Medicine, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, Henan, China.
Li C; Internet Medical and System Applications of National Engineering Laboratory, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, Henan, China.; Department of Pharmacy, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, Henan, China.
Liu L; Department of Hepatobiliary and Pancreatic Surgery, The First Affiliated Hospital of Xi'an Jiaotong University, Xi'an, 710061, Shanxi, China.
Li L; Cancer Center, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, Henan, China.
Weng S; Department of Interventional Radiology, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, Henan, China.
Xu H; Department of Interventional Radiology, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, Henan, China.
Xing Z; Department of Neurosurgery, The Fifth Affiliated Hospital of Zhengzhou University, Zhengzhou, 450000, Henan, China.
Zhang Y; Department of Interventional Radiology, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, Henan, China.
Wang L; Department of Pancreatic Cancer, Tianjin Medical University Cancer Institute and Hospital, Tianjin, 300060, China.
Liu Z; Department of Interventional Radiology, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, Henan, China. .; Institute of Basic Medical Sciences, Chinese Academy of Medical Sciences and Peking Union Medical College, Beijing, 100730, China. .
Han X; Department of Interventional Radiology, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, 450052, Henan, China. .
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Źródło:
BMC biology [BMC Biol] 2024 Mar 22; Vol. 22 (1), pp. 69. Date of Electronic Publication: 2024 Mar 22.
Typ publikacji:
Journal Article
MeSH Terms:
RNA, Long Noncoding*/genetics
Adenocarcinoma*
Lung Neoplasms*/genetics
Humans ; Sequence Analysis, RNA ; DNA Repair ; Lung ; Tumor Microenvironment/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
scDrugPrio: a framework for the analysis of single-cell transcriptomics to address multiple problems in precision medicine in immune-mediated inflammatory diseases.
Autorzy:
Schäfer S; Centre for Personalised Medicine, Linköping University, Linköping, Sweden.; Department of Gastroenterology and Hepatology, University Hospital, Linköping, Sweden.
Smelik M; Postal Address: LIME/Medical Digital Twin Research Group, Division of ENT, CLINTEC, Karolinska Institute, Tomtebodavägen 18A. 171 65 Solna, Stockholm, Sweden.
Sysoev O; Division of Statistics and Machine Learning, Department of Computer and Information Science, Linkoping University, Linköping, Sweden.
Zhao Y; Postal Address: LIME/Medical Digital Twin Research Group, Division of ENT, CLINTEC, Karolinska Institute, Tomtebodavägen 18A. 171 65 Solna, Stockholm, Sweden.
Eklund D; Centre for Personalised Medicine, Linköping University, Linköping, Sweden.
Lilja S; Centre for Personalised Medicine, Linköping University, Linköping, Sweden.; Mavatar, Inc, Stockholm, Sweden.
Gustafsson M; Division for Bioinformatics, Department of Physics, Chemistry and Biology, Linköping University, Linköping, Sweden.
Heyn H; CNAG-CRG, Centre for Genomic Regulation (CRG), Barcelona Institute of Science and Technology (BIST), 08028, Barcelona, Spain.; Universitat Pompeu Fabra (UPF), 08002, Barcelona, Spain.
Julia A; Grup de Recerca de Reumatologia, Institut de Recerca Vall d'Hebron, Barcelona, Spain.
Kovács IA; Department of Physics and Astronomy, Northwestern University, Evanston, IL, 60208, USA.; Northwestern Institute On Complex Systems, Northwestern University, Evanston, IL, 60208, USA.
Loscalzo J; Division of Cardiovascular Medicine, Channing Division of Network Medicine, Department of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Marsal S; Grup de Recerca de Reumatologia, Institut de Recerca Vall d'Hebron, Barcelona, Spain.
Zhang H; Centre for Personalised Medicine, Linköping University, Linköping, Sweden.
Li X; Postal Address: LIME/Medical Digital Twin Research Group, Division of ENT, CLINTEC, Karolinska Institute, Tomtebodavägen 18A. 171 65 Solna, Stockholm, Sweden.
Gawel D; Mavatar, Inc, Stockholm, Sweden.
Wang H; Postal Address: LIME/Medical Digital Twin Research Group, Division of ENT, CLINTEC, Karolinska Institute, Tomtebodavägen 18A. 171 65 Solna, Stockholm, Sweden.; Jiangsu Key Laboratory of Immunity and Metabolism, Department of Pathogenic Biology and Immunology, Xuzhou Medical University, Jiangsu, China.
Benson M; Postal Address: LIME/Medical Digital Twin Research Group, Division of ENT, CLINTEC, Karolinska Institute, Tomtebodavägen 18A. 171 65 Solna, Stockholm, Sweden. .
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Źródło:
Genome medicine [Genome Med] 2024 Mar 20; Vol. 16 (1), pp. 42. Date of Electronic Publication: 2024 Mar 20.
Typ publikacji:
Journal Article
MeSH Terms:
Crohn Disease*
Arthritis*
Humans ; Precision Medicine ; Tumor Necrosis Factor Inhibitors ; Gene Expression Profiling ; Immunomodulating Agents ; Single-Cell Analysis ; Sequence Analysis, RNA
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Integration of scRNA-seq data by disentangled representation learning with condition domain adaptation.
Autorzy:
Liu R; School of Mathematics and Physics, China University of Geosciences (Wuhan), Wuhan, 430074, China.
Qian K; School of Mathematics and Physics, China University of Geosciences (Wuhan), Wuhan, 430074, China.
He X; School of Mathematics and Physics, China University of Geosciences (Wuhan), Wuhan, 430074, China.
Li H; School of Mathematics and Physics, China University of Geosciences (Wuhan), Wuhan, 430074, China. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Mar 16; Vol. 25 (1), pp. 116. Date of Electronic Publication: 2024 Mar 16.
Typ publikacji:
Journal Article
MeSH Terms:
Single-Cell Gene Expression Analysis*
Learning*
Cluster Analysis ; RNA ; Single-Cell Analysis ; Sequence Analysis, RNA ; Gene Expression Profiling ; Algorithms
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Transcriptome Analysis by RNA Sequencing of Mouse Embryonic Stem Cells Stocked on International Space Station for 1584 Days in Frozen State after Culture on the Ground.
Autorzy:
Yoshida K; Graduate School of Medicine, Osaka Metropolitan University, Osaka 545-8585, Japan.
Hada M; Radiation Institute for Science and Engineering, Prairie View A&M University, Prairie View, TX 77446, USA.
Hayashi M; Graduate School of Medicine, Osaka Metropolitan University, Osaka 545-8585, Japan.
Kizu A; Graduate School of Medicine, Osaka Metropolitan University, Osaka 545-8585, Japan.
Kitada K; Graduate School of Medicine, Osaka Metropolitan University, Osaka 545-8585, Japan.
Eguchi-Kasai K; QST National Institute of Radiation Sciences (NIRS), Chiba 263-0024, Japan.
Kokubo T; QST National Institute of Radiation Sciences (NIRS), Chiba 263-0024, Japan.
Teramura T; Faculty of Medicine, Kindai University, Osaka 577-8502, Japan.
Hashizume Suzuki H; Japan Space Forum (JSF), Tokyo 101-0062, Japan.
Watanabe H; Institute for Frontier Medical Sciences, Kyoto University, Kyoto 606-8501, Japan.
Kondoh G; Institute for Frontier Medical Sciences, Kyoto University, Kyoto 606-8501, Japan.
Nagamatsu A; Japan Aerospace Exploration Agency (JAXA), Tsukuba 305-8505, Japan.
Saganti P; Radiation Institute for Science and Engineering, Prairie View A&M University, Prairie View, TX 77446, USA.
Muratani M; Department of Genome Biology, Faculty of Medicine, University of Tsukuba, Tsukuba 305-8575, Japan.
Cucinotta FA; Department of Health Physics and Diagnostic Sciences, University of Nevada, Las Vegas, NV 89154, USA.
Morita T; Graduate School of Medicine, Osaka Metropolitan University, Osaka 545-8585, Japan.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2024 Mar 14; Vol. 25 (6). Date of Electronic Publication: 2024 Mar 14.
Typ publikacji:
Journal Article
MeSH Terms:
Mouse Embryonic Stem Cells*
DNA Breaks, Double-Stranded*
Animals ; Mice ; DNA Repair ; DNA End-Joining Repair ; Sequence Analysis, RNA ; Gene Expression Profiling
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Bulk and Single-Cell RNA Sequencing Elucidate the Etiology of Severe COVID-19.
Autorzy:
Huminiecki Ł; Institute of Genetics and Animal Biotechnology, Polish Academy of Sciences, Postępu 36A, Jastrzębiec, 05-552 Magdalenka, Poland.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2024 Mar 14; Vol. 25 (6). Date of Electronic Publication: 2024 Mar 14.
Typ publikacji:
Journal Article; Review
MeSH Terms:
COVID-19*/genetics
Humans ; SARS-CoV-2 ; Lung ; Inflammation ; Sequence Analysis, RNA
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Wyświetlanie 1-20 z 8519

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