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Tytuł:
BioSeq-Diabolo: Biological sequence similarity analysis using Diabolo.
Autorzy:
Li H; School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China.
Liu B; School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China.; Advanced Research Institute of Multidisciplinary Science, Beijing Institute of Technology, Beijing, China.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2023 Jun 20; Vol. 19 (6), pp. e1011214. Date of Electronic Publication: 2023 Jun 20 (Print Publication: 2023).
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Sequence Analysis, DNA*/methods
Sequence Analysis, Protein*/methods
Natural Language Processing ; Internet ; Computational Biology ; Semantics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Highly accurate long reads are crucial for realizing the potential of biodiversity genomics.
Autorzy:
Hotaling S; Department of Watershed Sciences, Utah State University, Logan, UT, USA. .
Wilcox ER; DNA Sequencing Center, Department of Biology, Brigham Young University, Provo, UT, USA.
Heckenhauer J; LOEWE Centre for Translational Biodiversity Genomics (LOEWE-TBG), Frankfurt, Germany.; Department of Terrestrial Zoology, Senckenberg Research Institute and Natural History Museum Frankfurt, 60325, Frankfurt, Germany.
Stewart RJ; Department of Biomedical Engineering, University of Utah, Salt Lake City, UT, USA.
Frandsen PB; LOEWE Centre for Translational Biodiversity Genomics (LOEWE-TBG), Frankfurt, Germany. paul_.; Department of Plant and Wildlife Sciences, Brigham Young University, Provo, UT, USA. paul_.; Data Science Lab, Smithsonian Institution, Washington, DC, USA. paul_.
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Źródło:
BMC genomics [BMC Genomics] 2023 Mar 16; Vol. 24 (1), pp. 117. Date of Electronic Publication: 2023 Mar 16.
Typ publikacji:
Comparative Study; Journal Article
MeSH Terms:
Genomics*/methods
Genomics*/standards
Genomics*/trends
Biodiversity*
Sequence Analysis, DNA*/methods
Sequence Analysis, DNA*/standards
High-Throughput Nucleotide Sequencing*/methods
High-Throughput Nucleotide Sequencing*/standards
High-Throughput Nucleotide Sequencing*/trends
Insecta/classification ; Insecta/genetics ; Fibroins/genetics ; Contig Mapping ; Genome, Insect/genetics ; Animals ; Databases, Nucleic Acid ; Reproducibility of Results ; Meta-Analysis as Topic ; Datasets as Topic ; Plants/genetics ; Genome, Plant/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Mito-SiPE is a sequence-independent and PCR-free mtDNA enrichment method for accurate ultra-deep mitochondrial sequencing.
Autorzy:
Walsh DJ; Gene and Environment Interaction Section, National Human Genome Research Institute, NIH, Bethesda, MD, USA.; School of Biotechnology, Dublin City University, Dublin, Ireland.
Bernard DJ; Gene and Environment Interaction Section, National Human Genome Research Institute, NIH, Bethesda, MD, USA.
Pangilinan F; Gene and Environment Interaction Section, National Human Genome Research Institute, NIH, Bethesda, MD, USA.
Esposito M; Gene and Environment Interaction Section, National Human Genome Research Institute, NIH, Bethesda, MD, USA.
Harold D; School of Biotechnology, Dublin City University, Dublin, Ireland.
Parle-McDermott A; School of Biotechnology, Dublin City University, Dublin, Ireland.
Brody LC; Gene and Environment Interaction Section, National Human Genome Research Institute, NIH, Bethesda, MD, USA. .
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Źródło:
Communications biology [Commun Biol] 2022 Nov 19; Vol. 5 (1), pp. 1269. Date of Electronic Publication: 2022 Nov 19.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't
MeSH Terms:
DNA, Mitochondrial*/genetics
Genome, Mitochondrial*
Sequence Analysis, DNA*/methods
Animals ; Mice ; Mitochondria/genetics ; Polymerase Chain Reaction
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Ancient genomes and West Eurasian history.
Autorzy:
Arbuckle BS; Department of Anthropology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
Schwandt Z; Department of Anthropology, University of North Carolina at Chapel Hill, Chapel Hill, NC, USA.
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Źródło:
Science (New York, N.Y.) [Science] 2022 Aug 26; Vol. 377 (6609), pp. 922-923. Date of Electronic Publication: 2022 Aug 25.
Typ publikacji:
Historical Article; Journal Article; Comment
MeSH Terms:
Genome, Human*
Sequence Analysis, DNA*
Asia ; DNA, Ancient ; Europe ; History, Ancient ; Humans
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Upstart DNA sequencers could be a 'game changer'.
Autorzy:
Pennisi E
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Źródło:
Science (New York, N.Y.) [Science] 2022 Jun 17; Vol. 376 (6599), pp. 1257-1258. Date of Electronic Publication: 2022 Jun 16.
Typ publikacji:
Wiadomości
MeSH Terms:
Sequence Analysis, DNA*/instrumentation
Sequence Analysis, DNA*/trends
Early Detection of Cancer/instrumentation ; Single-Cell Analysis/instrumentation
Periodyk
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Get law enforcement out of biospecimen authentication.
Autorzy:
Mathews DJH; Berman Institute of Bioethics, Johns Hopkins University, Baltimore, MD, USA.; Department of Genetic Medicine, Johns Hopkins University, Baltimore, MD, USA.
Ram N; Carey School of Law, University of Maryland, Baltimore, MD, USA.
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Źródło:
Science (New York, N.Y.) [Science] 2022 Jun 17; Vol. 376 (6599), pp. 1274-1276. Date of Electronic Publication: 2022 Jun 16.
Typ publikacji:
Journal Article
MeSH Terms:
Cell Line Authentication*/ethics
Cell Line Authentication*/standards
Forensic Genetics*/ethics
Law Enforcement*/ethics
Sequence Analysis, DNA*/ethics
Specimen Handling*/ethics
Trust*
Community Participation ; Genetic Markers ; Humans
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Proof of concept for multiplex amplicon sequencing for mutation identification using the MinION nanopore sequencer.
Autorzy:
Whitford W; School of Biological Sciences, The University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand. .; Centre for Brain Research, The University of Auckland, Auckland, New Zealand. .
Hawkins V; School of Biological Sciences, The University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand.; Centre for Brain Research, The University of Auckland, Auckland, New Zealand.
Moodley KS; School of Biological Sciences, The University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand.; Centre for Brain Research, The University of Auckland, Auckland, New Zealand.
Grant MJ; School of Biological Sciences, The University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand.; Centre for Brain Research, The University of Auckland, Auckland, New Zealand.
Lehnert K; School of Biological Sciences, The University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand.; Centre for Brain Research, The University of Auckland, Auckland, New Zealand.
Snell RG; School of Biological Sciences, The University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand.; Centre for Brain Research, The University of Auckland, Auckland, New Zealand.
Jacobsen JC; School of Biological Sciences, The University of Auckland, Private Bag 92019, Auckland, 1142, New Zealand.; Centre for Brain Research, The University of Auckland, Auckland, New Zealand.
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Źródło:
Scientific reports [Sci Rep] 2022 May 20; Vol. 12 (1), pp. 8572. Date of Electronic Publication: 2022 May 20.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Nanopore Sequencing*/methods
Sequence Analysis, DNA*/methods
Genomics ; High-Throughput Nucleotide Sequencing/methods ; Humans ; Mutation
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Advanced sequencing approaches detected insertions of viral and human origin in the viral genome of chronic hepatitis E virus patients.
Autorzy:
Papp CP; Division of Viral Gastroenteritis and Hepatitis Pathogens and Enteroviruses, Department of Infectious Diseases, Robert Koch Institute, Berlin, Germany.; Institute of Virology, Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität Zu Berlin, Berlin Institute of Health, German Centre for Infection Research, Berlin, Germany.
Biedermann P; Division of Viral Gastroenteritis and Hepatitis Pathogens and Enteroviruses, Department of Infectious Diseases, Robert Koch Institute, Berlin, Germany.; Institute of Virology, Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität Zu Berlin, Berlin Institute of Health, German Centre for Infection Research, Berlin, Germany.
Harms D; Division of Viral Gastroenteritis and Hepatitis Pathogens and Enteroviruses, Department of Infectious Diseases, Robert Koch Institute, Berlin, Germany.
Wang B; Division of Viral Gastroenteritis and Hepatitis Pathogens and Enteroviruses, Department of Infectious Diseases, Robert Koch Institute, Berlin, Germany.; College of Veterinary Medicine, Virginia Polytechnic Institute and State University, Blacksburg, VA, USA.
Kebelmann M; Division of Viral Gastroenteritis and Hepatitis Pathogens and Enteroviruses, Department of Infectious Diseases, Robert Koch Institute, Berlin, Germany.; Institute of Virology, Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität Zu Berlin, Berlin Institute of Health, German Centre for Infection Research, Berlin, Germany.
Choi M; Department of Nephrology and Intensive Medical Care, Charité Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin and Humboldt-Universität Zu Berlin, Berlin, Germany.
Helmuth J; Charité-Vivantes GmbH, Labor Berlin, Berlin, Germany.
Corman VM; Institute of Virology, Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität Zu Berlin, Berlin Institute of Health, German Centre for Infection Research, Berlin, Germany.
Thürmer A; Genome Sequencing, Methodology and Research Infrastructure, Robert Koch Institute, Berlin, Germany.
Altmann B; Division of Viral Gastroenteritis and Hepatitis Pathogens and Enteroviruses, Department of Infectious Diseases, Robert Koch Institute, Berlin, Germany.
Klink P; Division of Viral Gastroenteritis and Hepatitis Pathogens and Enteroviruses, Department of Infectious Diseases, Robert Koch Institute, Berlin, Germany.
Hofmann J; Institute of Virology, Charité-Universitätsmedizin Berlin, Corporate Member of Freie Universität Berlin, Humboldt-Universität Zu Berlin, Berlin Institute of Health, German Centre for Infection Research, Berlin, Germany.; Charité-Vivantes GmbH, Labor Berlin, Berlin, Germany.
Bock CT; Division of Viral Gastroenteritis and Hepatitis Pathogens and Enteroviruses, Department of Infectious Diseases, Robert Koch Institute, Berlin, Germany. .; Institute of Tropical Medicine, University of Tübingen, Tubingen, Germany. .
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Źródło:
Scientific reports [Sci Rep] 2022 Feb 02; Vol. 12 (1), pp. 1720. Date of Electronic Publication: 2022 Feb 02.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genome, Viral*
Mutagenesis, Insertional*
Sequence Analysis, DNA*
DNA, Viral/*genetics
Hepatitis E/*virology
Hepatitis E virus/*genetics
Hepatitis, Chronic/*virology
Hepatitis E/diagnosis ; Hepatitis E/genetics ; Hepatitis, Chronic/diagnosis ; Hepatitis, Chronic/genetics ; High-Throughput Nucleotide Sequencing ; Humans ; Polymerase Chain Reaction ; Polymorphism, Single Nucleotide ; RNA-Directed DNA Polymerase/genetics ; Whole Genome Sequencing
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Development of a high-resolution typing method for SLA-3, swine MHC class I antigen 3.
Autorzy:
Youk S; Department of Stem Cell and Regenerative Biotechnology, Konkuk University, Gwangjin-gu, Seoul, 05029, Korea.
Le MT; Department of Stem Cell and Regenerative Biotechnology, Konkuk University, Gwangjin-gu, Seoul, 05029, Korea.
Kang M; Department of Stem Cell and Regenerative Biotechnology, Konkuk University, Gwangjin-gu, Seoul, 05029, Korea.
Ahn B; Department of Stem Cell and Regenerative Biotechnology, Konkuk University, Gwangjin-gu, Seoul, 05029, Korea.
Choi M; Department of Stem Cell and Regenerative Biotechnology, Konkuk University, Gwangjin-gu, Seoul, 05029, Korea.
Kim K; Department of Stem Cell and Regenerative Biotechnology, Konkuk University, Gwangjin-gu, Seoul, 05029, Korea.; Livestock Support Department, National Agricultural Cooperative Federation Agribusiness Group, Seoul, 04516, Korea.
Kim TH; Animal Genomics and Bioinformatics Division, National Institute of Animal Science, RDA, Wanju, 55365, Korea.
Kim JH; Department of Stem Cell and Regenerative Biotechnology, Konkuk University, Gwangjin-gu, Seoul, 05029, Korea.
Ho CS; Gift of Hope Organ and Tissue Donor Network, 425 Spring Lake Drive, Itasca, IL, 60143, USA.
Park C; Department of Stem Cell and Regenerative Biotechnology, Konkuk University, Gwangjin-gu, Seoul, 05029, Korea.
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Źródło:
Animal genetics [Anim Genet] 2022 Feb; Vol. 53 (1), pp. 166-170. Date of Electronic Publication: 2021 Dec 15.
Typ publikacji:
Journal Article
MeSH Terms:
Genotyping Techniques/*veterinary
Histocompatibility Antigens Class I/*genetics
Sequence Analysis, DNA/*veterinary
Sus scrofa/*genetics
Animals ; Sequence Analysis, DNA/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Genome survey sequencing and characterization of simple sequence repeat (SSR) markers in Platostoma palustre (Blume) A.J.Paton (Chinese mesona).
Autorzy:
Zheng Z; Guangdong Sugarcane Genetic Improvement Engineering Center, Institute of Bioengineering, Guangdong Academy of Sciences, Guangzhou, 510316, China.; Zhongkai University of Agriculture and Engineering, Guangzhou, 510225, China.
Zhang N; Guangdong Sugarcane Genetic Improvement Engineering Center, Institute of Bioengineering, Guangdong Academy of Sciences, Guangzhou, 510316, China.
Huang Z; Guangdong Sugarcane Genetic Improvement Engineering Center, Institute of Bioengineering, Guangdong Academy of Sciences, Guangzhou, 510316, China.; Zhongkai University of Agriculture and Engineering, Guangzhou, 510225, China.
Zeng Q; Guangdong Sugarcane Genetic Improvement Engineering Center, Institute of Bioengineering, Guangdong Academy of Sciences, Guangzhou, 510316, China.
Huang Y; Guangdong Sugarcane Genetic Improvement Engineering Center, Institute of Bioengineering, Guangdong Academy of Sciences, Guangzhou, 510316, China.
Qi Y; Guangdong Sugarcane Genetic Improvement Engineering Center, Institute of Bioengineering, Guangdong Academy of Sciences, Guangzhou, 510316, China. .; Zhongkai University of Agriculture and Engineering, Guangzhou, 510225, China. .
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Źródło:
Scientific reports [Sci Rep] 2022 Jan 10; Vol. 12 (1), pp. 355. Date of Electronic Publication: 2022 Jan 10.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genes, Plant*
Genome, Plant*
High-Throughput Nucleotide Sequencing*
Microsatellite Repeats*
Sequence Analysis, DNA*
Whole Genome Sequencing*
DNA, Plant/*genetics
Lamiaceae/*genetics
Genetic Markers ; Phylogeny
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Insights into opium poppy (Papaver spp.) genetic diversity from genotyping-by-sequencing analysis.
Autorzy:
Hong UVT; La Trobe Institute for Agriculture and Food, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia.; Australian Research Council Research Hub for Medicinal Agriculture, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia.
Tamiru-Oli M; La Trobe Institute for Agriculture and Food, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia. .; Australian Research Council Research Hub for Medicinal Agriculture, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia. .
Hurgobin B; La Trobe Institute for Agriculture and Food, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia.; Australian Research Council Research Hub for Medicinal Agriculture, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia.
Okey CR; Palla Pharma Ltd, Docklands, VIC, 3008, Australia.
Abreu AR; Palla Pharma Ltd, Docklands, VIC, 3008, Australia.
Lewsey MG; La Trobe Institute for Agriculture and Food, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia. .; Australian Research Council Research Hub for Medicinal Agriculture, La Trobe University, AgriBio Building, Bundoora, VIC, 3086, Australia. .
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Źródło:
Scientific reports [Sci Rep] 2022 Jan 07; Vol. 12 (1), pp. 111. Date of Electronic Publication: 2022 Jan 07.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genes, Plant*
Genetic Variation*
Genome, Plant*
Genotyping Techniques*
Polymorphism, Single Nucleotide*
Sequence Analysis, DNA*
DNA, Plant/*genetics
Papaver/*genetics
Seeds/*genetics
Alkaloids/metabolism ; Genotype ; Papaver/growth & development ; Papaver/metabolism ; Phenotype ; Phylogeny ; Seeds/growth & development ; Seeds/metabolism
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Interpretable Autoencoders Trained on Single Cell Sequencing Data Can Transfer Directly to Data from Unseen Tissues.
Autorzy:
Walbech JS; Center for Genomic Medicine, Rigshospitalet, University of Copenhagen, Blegdamsvej 9, 2100 Copenhagen, Denmark.; Center for Surgical Science, Zealand University Hospital, Lykkebækvej 1, 4600 Koege, Denmark.
Kinalis S; Center for Genomic Medicine, Rigshospitalet, University of Copenhagen, Blegdamsvej 9, 2100 Copenhagen, Denmark.
Winther O; Center for Genomic Medicine, Rigshospitalet, University of Copenhagen, Blegdamsvej 9, 2100 Copenhagen, Denmark.
Nielsen FC; Center for Genomic Medicine, Rigshospitalet, University of Copenhagen, Blegdamsvej 9, 2100 Copenhagen, Denmark.
Bagger FO; Center for Genomic Medicine, Rigshospitalet, University of Copenhagen, Blegdamsvej 9, 2100 Copenhagen, Denmark.
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Źródło:
Cells [Cells] 2021 Dec 28; Vol. 11 (1). Date of Electronic Publication: 2021 Dec 28.
Typ publikacji:
Journal Article
MeSH Terms:
Algorithms*
Organ Specificity*
Sequence Analysis, DNA*
Single-Cell Analysis*
Databases as Topic ; Genomics ; Humans ; Lung/pathology ; Models, Biological
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
ddPCR allows 16S rRNA gene amplicon sequencing of very small DNA amounts from low-biomass samples.
Autorzy:
Abellan-Schneyder I; Core Facility Microbiome, ZIEL - Institute for Food & Health, Technische Universität München, Freising, Germany.
Schusser AJ; Core Facility Microbiome, ZIEL - Institute for Food & Health, Technische Universität München, Freising, Germany.
Neuhaus K; Core Facility Microbiome, ZIEL - Institute for Food & Health, Technische Universität München, Freising, Germany. .
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Źródło:
BMC microbiology [BMC Microbiol] 2021 Dec 18; Vol. 21 (1), pp. 349. Date of Electronic Publication: 2021 Dec 18.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Biomass*
Polymerase Chain Reaction/*methods
RNA, Ribosomal, 16S/*genetics
Sequence Analysis, DNA/*methods
Bacteria/classification ; Bacteria/genetics ; Bacteria/isolation & purification ; Bias ; DNA, Bacterial/analysis ; DNA, Bacterial/genetics ; Feces/microbiology ; High-Throughput Nucleotide Sequencing/methods ; High-Throughput Nucleotide Sequencing/standards ; Humans ; Limit of Detection ; Microbiota/genetics ; Polymerase Chain Reaction/standards ; Reproducibility of Results ; Sequence Analysis, DNA/standards ; Water Microbiology
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Prediction of SARS-CoV-2 Variant Lineages Using the S1-Encoding Region Sequence Obtained by PacBio Single-Molecule Real-Time Sequencing.
Autorzy:
Lhomme S; Infinity, Université Toulouse, CNRS, INSERM, UPS, 31300 Toulouse, France.; Laboratoire de Virologie, CHU Toulouse, Hôpital Purpan, 31300 Toulouse, France.
Latour J; Laboratoire de Virologie, CHU Toulouse, Hôpital Purpan, 31300 Toulouse, France.
Jeanne N; Laboratoire de Virologie, CHU Toulouse, Hôpital Purpan, 31300 Toulouse, France.
Trémeaux P; Laboratoire de Virologie, CHU Toulouse, Hôpital Purpan, 31300 Toulouse, France.
Ranger N; Laboratoire de Virologie, CHU Toulouse, Hôpital Purpan, 31300 Toulouse, France.
Migueres M; Infinity, Université Toulouse, CNRS, INSERM, UPS, 31300 Toulouse, France.; Laboratoire de Virologie, CHU Toulouse, Hôpital Purpan, 31300 Toulouse, France.
Salin G; INRAE, US 1426, GeT-PlaGe, Genotoul, 31326 Castanet-Tolosan, France.
Donnadieu C; INRAE, US 1426, GeT-PlaGe, Genotoul, 31326 Castanet-Tolosan, France.
Izopet J; Infinity, Université Toulouse, CNRS, INSERM, UPS, 31300 Toulouse, France.; Laboratoire de Virologie, CHU Toulouse, Hôpital Purpan, 31300 Toulouse, France.
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Źródło:
Viruses [Viruses] 2021 Dec 18; Vol. 13 (12). Date of Electronic Publication: 2021 Dec 18.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Sequence Analysis, DNA*/methods
SARS-CoV-2/*genetics
Spike Glycoprotein, Coronavirus/*genetics
COVID-19/virology ; Genotype ; Humans ; Mutation ; Protein Interaction Domains and Motifs/genetics ; SARS-CoV-2/classification
SCR Organism:
SARS-CoV-2 variants
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Table2Vec-automated universal representation learning of enterprise data DNA for benchmarkable and explainable enterprise data science.
Autorzy:
Cao L; University of Technology Sydney, Sydney, Australia. .
Zhu C; University of Technology Sydney, Sydney, Australia.
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Źródło:
Scientific reports [Sci Rep] 2021 Dec 14; Vol. 11 (1), pp. 23957. Date of Electronic Publication: 2021 Dec 14.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Databases, Nucleic Acid*
Machine Learning*
Sequence Analysis, DNA*
Software*
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Sequence variations, flanking region mutations, and allele frequency at 31 autosomal STRs in the central Indian population by next generation sequencing (NGS).
Autorzy:
Dash HR; DNA Fingerprinting Unit, Integrated High-Tech Complex, Forensic Science Laboratory, Bhopal, Madhya Pradesh, 462003, India. .
Kaitholia K; DNA Fingerprinting Unit, Integrated High-Tech Complex, Forensic Science Laboratory, Bhopal, Madhya Pradesh, 462003, India.
Kumawat RK; DNA Division, State Forensic Science Laboratory, Jaipur, Rajasthan, 302016, India.
Singh AK; DNA Fingerprinting Unit, Integrated High-Tech Complex, Forensic Science Laboratory, Bhopal, Madhya Pradesh, 462003, India.
Shrivastava P; DNA Fingerprinting Unit, State Forensic Science Laboratory, Sagar, Madhya Pradesh, 769001, India.
Chaubey G; Cytogenetics Laboratory, Department of Zoology, Banaras Hindu University, Varanasi, 221005, India.
Das S; Department of Life Science, National Institute of Technology, Rourkela, Odisha, 470001, India.
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Źródło:
Scientific reports [Sci Rep] 2021 Dec 01; Vol. 11 (1), pp. 23238. Date of Electronic Publication: 2021 Dec 01.
Typ publikacji:
Journal Article
MeSH Terms:
Genetics, Population*
High-Throughput Nucleotide Sequencing*
Sequence Analysis, DNA*
Adult ; Female ; Forensic Genetics/methods ; Gene Frequency ; Humans ; India ; Male
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Single-cell DNA and RNA sequencing of circulating tumor cells.
Autorzy:
Kojima M; Graduate School of Biomedical and Health Sciences, Hiroshima University, Hiroshima, Japan.; Natural Science Center for Basic Research and Development (N-BARD), Hiroshima University, Hiroshima, Japan.
Harada T; Natural Science Center for Basic Research and Development (N-BARD), Hiroshima University, Hiroshima, Japan.
Fukazawa T; Natural Science Center for Basic Research and Development (N-BARD), Hiroshima University, Hiroshima, Japan.
Kurihara S; Graduate School of Biomedical and Health Sciences, Hiroshima University, Hiroshima, Japan.
Saeki I; Department of Pediatric Surgery, Hiroshima University Hospital, Hiroshima, Japan.
Takahashi S; Graduate School of Biomedical and Health Sciences, Hiroshima University, Hiroshima, Japan.
Hiyama E; Graduate School of Biomedical and Health Sciences, Hiroshima University, Hiroshima, Japan. .; Natural Science Center for Basic Research and Development (N-BARD), Hiroshima University, Hiroshima, Japan. .
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Źródło:
Scientific reports [Sci Rep] 2021 Nov 24; Vol. 11 (1), pp. 22864. Date of Electronic Publication: 2021 Nov 24.
Typ publikacji:
Comparative Study; Journal Article
MeSH Terms:
Sequence Analysis, DNA*
Sequence Analysis, RNA*
Single-Cell Analysis*
Biomarkers, Tumor/*genetics
DNA, Neoplasm/*genetics
Neoplastic Cells, Circulating/*chemistry
Neuroblastoma/*genetics
RNA, Neoplasm/*genetics
Cell Line, Tumor ; Genetic Heterogeneity ; High-Throughput Nucleotide Sequencing ; Humans ; Neoplastic Cells, Circulating/pathology ; Neuroblastoma/blood ; Neuroblastoma/pathology ; Polymerase Chain Reaction ; Predictive Value of Tests ; Reproducibility of Results ; Exome Sequencing
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
DNA bridges: A novel platform for single-molecule sequencing and other DNA-protein interaction applications.
Autorzy:
Righini M; Department of Advanced Research and Development, Centrillion Technologies, Palo Alto, California, United States of America.
Costa J; Department of Advanced Research and Development, Centrillion Technologies, Palo Alto, California, United States of America.
Zhou W; Department of Advanced Research and Development, Centrillion Technologies, Palo Alto, California, United States of America.
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Źródło:
PloS one [PLoS One] 2021 Nov 22; Vol. 16 (11), pp. e0260428. Date of Electronic Publication: 2021 Nov 22 (Print Publication: 2021).
Typ publikacji:
Journal Article
MeSH Terms:
Sequence Analysis, DNA*
DNA/*genetics
Animals ; DNA/analysis ; DNA/metabolism ; Fluorescent Dyes/analysis ; Fluorescent Dyes/metabolism ; High-Throughput Nucleotide Sequencing ; Humans ; Nucleotides/analysis ; Nucleotides/genetics ; Nucleotides/metabolism ; Optical Imaging ; Proteins/metabolism
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Cell-Free DNA Variant Sequencing Using Plasma and AR-V7 Testing of Circulating Tumor Cells in Prostate Cancer Patients.
Autorzy:
Lieb V; Department of Urology and Pediatric Urology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany.; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.
Abdulrahman A; Department of Urology and Pediatric Urology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany.; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.
Weigelt K; Department of Urology and Pediatric Urology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany.; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.
Hauch S; QIAGEN GmbH, 40724 Hilden, Germany.
Gombert M; QIAGEN GmbH, 40724 Hilden, Germany.
Guzman J; Department of Urology and Pediatric Urology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany.; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.
Bellut L; Department of Urology and Pediatric Urology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany.; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.
Goebell PJ; Department of Urology and Pediatric Urology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany.; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.
Stöhr R; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.; Institute of Pathology, University Hospital Erlangen, FAU Erlangen-Nürnberg, 91054 Erlangen, Germany.
Hartmann A; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.; Institute of Pathology, University Hospital Erlangen, FAU Erlangen-Nürnberg, 91054 Erlangen, Germany.
Wullich B; Department of Urology and Pediatric Urology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany.; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.
Taubert H; Department of Urology and Pediatric Urology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany.; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.
Wach S; Department of Urology and Pediatric Urology, Universitätsklinikum Erlangen, Friedrich-Alexander-Universität Erlangen-Nürnberg, 91054 Erlangen, Germany.; Comprehensive Cancer Center Erlangen-EMN (CCC ER-EMN), 91054 Erlangen, Germany.
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Źródło:
Cells [Cells] 2021 Nov 18; Vol. 10 (11). Date of Electronic Publication: 2021 Nov 18.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genetic Variation*
Sequence Analysis, DNA*
Cell-Free Nucleic Acids/*blood
Neoplastic Cells, Circulating/*pathology
Prostatic Neoplasms/*blood
Prostatic Neoplasms/*genetics
Receptors, Androgen/*genetics
Aged ; Aged, 80 and over ; Humans ; Kaplan-Meier Estimate ; Male ; Middle Aged ; Prognosis ; Prostatic Neoplasms/pathology
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Constructing germline research cohorts from the discarded reads of clinical tumor sequences.
Autorzy:
Gusev A; Division of Population Sciences, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA, USA. alexander_.; Division of Genetics, Brigham and Women's Hospital and Harvard Medical School, Boston, MA, USA. alexander_.; The Broad Institute of MIT & Harvard, Cambridge, MA, USA. alexander_.
Groha S; Division of Population Sciences, Dana-Farber Cancer Institute and Harvard Medical School, Boston, MA, USA.; The Broad Institute of MIT & Harvard, Cambridge, MA, USA.
Taraszka K; Departments of Neurology and Computational Medicine, UCLA, Los Angeles, CA, USA.
Semenov YR; Department of Dermatology, Massachusetts General Hospital, Boston, MA, USA.
Zaitlen N; Departments of Neurology and Computational Medicine, UCLA, Los Angeles, CA, USA. .
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Źródło:
Genome medicine [Genome Med] 2021 Nov 08; Vol. 13 (1), pp. 179. Date of Electronic Publication: 2021 Nov 08.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Germ Cells*
Sequence Analysis, DNA*
Genetic Predisposition to Disease/*genetics
Neoplasms/*genetics
Alleles ; Computational Biology ; DNA Copy Number Variations ; Gene Frequency ; Genome-Wide Association Study ; Genotype ; Genotyping Techniques ; High-Throughput Nucleotide Sequencing ; Humans ; Mutation ; Polymorphism, Single Nucleotide
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Wyświetlanie 1-20 z 19281

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