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Tytuł:
Bidirectional de novo peptide sequencing using a transformer model.
Autorzy:
Lee S; Center for Biomedical Computing, Korea Institute of Science and Technology Information, Daejeon, Republic of Korea.
Kim H; Center for Biomedical Computing, Korea Institute of Science and Technology Information, Daejeon, Republic of Korea.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2024 Feb 28; Vol. 20 (2), pp. e1011892. Date of Electronic Publication: 2024 Feb 28 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Algorithms*
Sequence Analysis, Protein*/methods
Peptides/chemistry ; Amino Acid Sequence ; Amino Acids
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
BioSeq-Diabolo: Biological sequence similarity analysis using Diabolo.
Autorzy:
Li H; School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China.
Liu B; School of Computer Science and Technology, Beijing Institute of Technology, Beijing, China.; Advanced Research Institute of Multidisciplinary Science, Beijing Institute of Technology, Beijing, China.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2023 Jun 20; Vol. 19 (6), pp. e1011214. Date of Electronic Publication: 2023 Jun 20 (Print Publication: 2023).
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Sequence Analysis, DNA*/methods
Sequence Analysis, Protein*/methods
Natural Language Processing ; Internet ; Computational Biology ; Semantics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Evolution-inspired engineering of nonribosomal peptide synthetases.
Autorzy:
Bozhüyük KAJ; Max Planck Institute for Terrestrial Microbiology, Department of Natural Products in Organismic Interactions, 35043 Marburg, Germany.; Molecular Biotechnology, Department of Biosciences, Goethe-University Frankfurt, 60438 Frankfurt, Germany.; Myria Biosciences AG, Tech Park Basel, Hochbergstrasse 60C, 4057 Basel, Switzerland.
Präve L; Max Planck Institute for Terrestrial Microbiology, Department of Natural Products in Organismic Interactions, 35043 Marburg, Germany.; Molecular Biotechnology, Department of Biosciences, Goethe-University Frankfurt, 60438 Frankfurt, Germany.
Kegler C; Max Planck Institute for Terrestrial Microbiology, Department of Natural Products in Organismic Interactions, 35043 Marburg, Germany.; Molecular Biotechnology, Department of Biosciences, Goethe-University Frankfurt, 60438 Frankfurt, Germany.
Schenk L; Max Planck Institute for Terrestrial Microbiology, Department of Natural Products in Organismic Interactions, 35043 Marburg, Germany.; Molecular Biotechnology, Department of Biosciences, Goethe-University Frankfurt, 60438 Frankfurt, Germany.
Kaiser S; Max Planck Institute for Terrestrial Microbiology, Department of Natural Products in Organismic Interactions, 35043 Marburg, Germany.; Evolutionary Biochemistry Group, Max Planck Institute for Terrestrial Microbiology, 35043 Marburg, Germany.
Schelhas C; Max Planck Institute for Terrestrial Microbiology, Department of Natural Products in Organismic Interactions, 35043 Marburg, Germany.
Shi YN; Molecular Biotechnology, Department of Biosciences, Goethe-University Frankfurt, 60438 Frankfurt, Germany.
Kuttenlochner W; Chair of Biochemistry, Center for Protein Assemblies, Technical University of Munich, Ernst-Otto-Fischer-Straße 8, 85748 Garching, Germany.
Schreiber M; Max Planck Institute for Terrestrial Microbiology, Department of Natural Products in Organismic Interactions, 35043 Marburg, Germany.; Molecular Biotechnology, Department of Biosciences, Goethe-University Frankfurt, 60438 Frankfurt, Germany.
Kandler J; Molecular Biotechnology, Department of Biosciences, Goethe-University Frankfurt, 60438 Frankfurt, Germany.
Alanjary M; Bioinformatics Group, Wageningen University, Droevendaalsesteeg 1, 6708PB Wageningen, The Netherlands.
Mohiuddin TM; Molecular Biotechnology, Department of Biosciences, Goethe-University Frankfurt, 60438 Frankfurt, Germany.
Groll M; Chair of Biochemistry, Center for Protein Assemblies, Technical University of Munich, Ernst-Otto-Fischer-Straße 8, 85748 Garching, Germany.
Hochberg GKA; Evolutionary Biochemistry Group, Max Planck Institute for Terrestrial Microbiology, 35043 Marburg, Germany.; Center for Synthetic Microbiology (SYNMIKRO), Phillips University Marburg, 35043 Marburg, Germany.; Department of Chemistry, Phillips University Marburg, 35043 Marburg, Germany.
Bode HB; Max Planck Institute for Terrestrial Microbiology, Department of Natural Products in Organismic Interactions, 35043 Marburg, Germany.; Molecular Biotechnology, Department of Biosciences, Goethe-University Frankfurt, 60438 Frankfurt, Germany.; Center for Synthetic Microbiology (SYNMIKRO), Phillips University Marburg, 35043 Marburg, Germany.; Department of Chemistry, Phillips University Marburg, 35043 Marburg, Germany.; LOEWE Centre for Translational Biodiversity Genomics (LOEWE-TBG) & Senckenberg Gesellschaft für Naturforschung, 60325 Frankfurt, Germany.
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Źródło:
Science (New York, N.Y.) [Science] 2024 Mar 22; Vol. 383 (6689), pp. eadg4320. Date of Electronic Publication: 2024 Mar 22.
Typ publikacji:
Journal Article
MeSH Terms:
Peptide Synthases*/chemistry
Peptide Synthases*/classification
Peptide Synthases*/genetics
Protein Engineering*
Evolution, Molecular*
Bacterial Proteins*/chemistry
Bacterial Proteins*/classification
Bacterial Proteins*/genetics
Phylogeny ; Amino Acid Sequence/genetics ; Sequence Analysis, Protein
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Enzyme function prediction using contrastive learning.
Autorzy:
Yu T; Department of Chemical and Biomolecular Engineering, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; National Science Foundation Molecule Maker Lab Institute, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.
Cui H; Department of Chemical and Biomolecular Engineering, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; National Science Foundation Molecule Maker Lab Institute, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.
Li JC; National Science Foundation Molecule Maker Lab Institute, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; Department of Computer Science, Cornell University, Ithaca, NY 14850, USA.
Luo Y; School of Computational Science and Engineering, Georgia Institute of Technology, Atlanta, GA 30308, USA.
Jiang G; Department of Chemical and Biomolecular Engineering, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.
Zhao H; Department of Chemical and Biomolecular Engineering, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; Carl R. Woese Institute for Genomic Biology, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; National Science Foundation Molecule Maker Lab Institute, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.; US Department of Energy Center for Advanced Bioenergy and Bioproducts Innovation, University of Illinois Urbana-Champaign, Urbana, IL 61801, USA.
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Źródło:
Science (New York, N.Y.) [Science] 2023 Mar 31; Vol. 379 (6639), pp. 1358-1363. Date of Electronic Publication: 2023 Mar 30.
Typ publikacji:
Journal Article
MeSH Terms:
Enzymes*/chemistry
Machine Learning*
Proteins*/chemistry
Molecular Sequence Annotation*/methods
Sequence Analysis, Protein*/methods
Algorithms ; Computational Biology ; Genomics ; Reproducibility of Results ; Biocatalysis
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Evolutionary-scale prediction of atomic-level protein structure with a language model.
Autorzy:
Lin Z; FAIR, Meta AI, New York, NY, USA.; New York University, New York, NY, USA.
Akin H; FAIR, Meta AI, New York, NY, USA.
Rao R; FAIR, Meta AI, New York, NY, USA.
Hie B; FAIR, Meta AI, New York, NY, USA.; Stanford University, Palo Alto, CA, USA.
Zhu Z; FAIR, Meta AI, New York, NY, USA.
Lu W; FAIR, Meta AI, New York, NY, USA.
Smetanin N; FAIR, Meta AI, New York, NY, USA.
Verkuil R; FAIR, Meta AI, New York, NY, USA.
Kabeli O; FAIR, Meta AI, New York, NY, USA.
Shmueli Y; FAIR, Meta AI, New York, NY, USA.
Dos Santos Costa A; Massachusetts Institute of Technology, Cambridge, MA, USA.
Fazel-Zarandi M; FAIR, Meta AI, New York, NY, USA.
Sercu T; FAIR, Meta AI, New York, NY, USA.
Candido S; FAIR, Meta AI, New York, NY, USA.
Rives A; FAIR, Meta AI, New York, NY, USA.; New York University, New York, NY, USA.
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Źródło:
Science (New York, N.Y.) [Science] 2023 Mar 17; Vol. 379 (6637), pp. 1123-1130. Date of Electronic Publication: 2023 Mar 16.
Typ publikacji:
Journal Article
MeSH Terms:
Machine Learning*
Proteins*/chemistry
Evolution, Molecular*
Sequence Analysis, Protein*
Amino Acid Sequence ; Protein Conformation
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
cpxDeepMSA: A Deep Cascade Algorithm for Constructing Multiple Sequence Alignments of Protein-Protein Interactions.
Autorzy:
Liu Z; School of Computer Science and Engineering, Nanjing University of Science and Technology, Nanjing 210094, China.
Yu DJ; School of Computer Science and Engineering, Nanjing University of Science and Technology, Nanjing 210094, China.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2022 Jul 30; Vol. 23 (15). Date of Electronic Publication: 2022 Jul 30.
Typ publikacji:
Journal Article
MeSH Terms:
Algorithms*
Sequence Analysis, Protein*/methods
Databases, Protein ; Proteins/chemistry ; Proteins/genetics ; Sequence Alignment
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
New free radical-initiated peptide sequencing (FRIPS) mass spectrometry reagent with high conjugation efficiency enabling single-step peptide sequencing.
Autorzy:
Lee ST; Department of Chemistry, Sogang University, Seoul, 04107, Korea.
Park H; Department of Chemistry, Sogang University, Seoul, 04107, Korea.
Jang I; Department of Chemistry, Sogang University, Seoul, 04107, Korea.
Lee CS; Department of Chemistry, Sogang University, Seoul, 04107, Korea.; Department of Toxicology and Chemistry, Scientific Investigation Laboratory, Criminal Investigation Command, Ministry of National Defense, Seoul, 04351, Korea.
Moon B; Department of Chemistry, Sogang University, Seoul, 04107, Korea. .
Oh HB; Department of Chemistry, Sogang University, Seoul, 04107, Korea. .
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Źródło:
Scientific reports [Sci Rep] 2022 Jun 09; Vol. 12 (1), pp. 9494. Date of Electronic Publication: 2022 Jun 09.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Sequence Analysis, Protein*/methods
Tandem Mass Spectrometry*/methods
Free Radicals/chemistry ; Indicators and Reagents ; Ions ; Phosphopeptides
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Tandem Mass Spectrometry de novo Sequencing of the Skin Defense Peptides of the Central Slovenian Agile Frog Rana dalmatina .
Autorzy:
Samgina TY; Department of Materials Science, MSU-BIT University, Shenzhen 517182, China.; Department of Organic Chemistry, Lomonosov Moscow State University, 119991 Moscow, Russia.
Vasileva ID; Department of Organic Chemistry, Lomonosov Moscow State University, 119991 Moscow, Russia.
Trebše P; Faculty of Health Sciences, University of Ljubljana Zdravstvena Pot 5, 1000 Ljubljana, Slovenia.
Torkar G; Department for Biology, Chemistry and Home Economics, University of Ljubljana Faculty of Education, Kardeljeva Ploščad 16, 1000 Ljubljana, Slovenia.
Surin AK; Pushchino Branch, Shemyakin-Ovchinnikov Institute of Bioorganic Chemistry, Russian Academy of Sciences, Prospekt Nauki 6, Pushchino, 142290 Moscow, Russia.
Meng Z; Department of Medicinal Biochemistry and Biophysics, Division of Molecular Biometry, Karolinska Institutet, SE-171 77 Stockholm, Sweden.
Zubarev RA; Department of Medicinal Biochemistry and Biophysics, Division of Molecular Biometry, Karolinska Institutet, SE-171 77 Stockholm, Sweden.; The National Medical Research Center for Endocrinology, 115478 Moscow, Russia.; Department of Pharmacological & Technological Chemistry, I.M. Sechenov First Moscow State Medical University, 119146 Moscow, Russia.
Lebedev AT; Department of Materials Science, MSU-BIT University, Shenzhen 517182, China.; Department of Organic Chemistry, Lomonosov Moscow State University, 119991 Moscow, Russia.
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Źródło:
Molecules (Basel, Switzerland) [Molecules] 2023 Oct 16; Vol. 28 (20). Date of Electronic Publication: 2023 Oct 16.
Typ publikacji:
Journal Article
MeSH Terms:
Tandem Mass Spectrometry*/methods
Ranidae*
Humans ; Animals ; Amino Acid Sequence ; Anura ; Sequence Analysis, Protein/methods ; Skin/chemistry
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
FT-MS in the de novo top-down sequencing of natural nontryptic peptides.
Autorzy:
Lebedev AT; Organic Chemistry Department, M.V. Lomonosov Moscow State University, Moscow, Russia.
Vasileva ID; Organic Chemistry Department, M.V. Lomonosov Moscow State University, Moscow, Russia.
Samgina TY; Organic Chemistry Department, M.V. Lomonosov Moscow State University, Moscow, Russia.
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Źródło:
Mass spectrometry reviews [Mass Spectrom Rev] 2022 Mar; Vol. 41 (2), pp. 284-313. Date of Electronic Publication: 2020 Dec 21.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Peptides*/chemistry
Sequence Analysis, Protein*/methods
Amino Acid Sequence ; Animals ; Mass Spectrometry/methods ; Proteins
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Clustering of Aromatic Amino Acid Residues around Methionine in Proteins.
Autorzy:
Gibbs CA; Department of Chemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.
Weber DS; Department of Chemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.
Warren JJ; Department of Chemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC V5A 1S6, Canada.
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Źródło:
Biomolecules [Biomolecules] 2021 Dec 21; Vol. 12 (1). Date of Electronic Publication: 2021 Dec 21.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Amino Acids, Aromatic*/chemistry
Amino Acids, Aromatic*/genetics
Methionine*/chemistry
Methionine*/genetics
Proteins*/chemistry
Proteins*/genetics
Sequence Analysis, Protein*
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Multiple rereads of single proteins at single-amino acid resolution using nanopores.
Autorzy:
Brinkerhoff H; Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, 2629 HZ Delft, Netherlands.
Kang ASW; Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, 2629 HZ Delft, Netherlands.
Liu J; Center for Biophysics and Quantitative Biology and Department of Physics, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Aksimentiev A; Center for Biophysics and Quantitative Biology and Department of Physics, University of Illinois at Urbana-Champaign, Urbana, IL 61801, USA.
Dekker C; Department of Bionanoscience, Kavli Institute of Nanoscience, Delft University of Technology, 2629 HZ Delft, Netherlands.
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Źródło:
Science (New York, N.Y.) [Science] 2021 Dec 17; Vol. 374 (6574), pp. 1509-1513. Date of Electronic Publication: 2021 Nov 04.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Amino Acid Substitution*
Nanopores*
Sequence Analysis, Protein*
Amino Acids/*chemistry
Peptides/*chemistry
Proteomics/*methods
DNA Helicases ; Molecular Dynamics Simulation
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Molecular evolution of chloroplast genomes in subfamily Zingiberoideae (Zingiberaceae).
Autorzy:
Li DM; Guangdong Key Laboratory of Ornamental Plant Germplasm Innovation and Utilization, Environmental Horticulture Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China. .
Li J; Guangdong Key Laboratory of Ornamental Plant Germplasm Innovation and Utilization, Environmental Horticulture Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China.
Wang DR; Guangdong Key Laboratory of Ornamental Plant Germplasm Innovation and Utilization, Environmental Horticulture Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China.
Xu YC; Guangdong Key Laboratory of Ornamental Plant Germplasm Innovation and Utilization, Environmental Horticulture Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China.
Zhu GF; Guangdong Key Laboratory of Ornamental Plant Germplasm Innovation and Utilization, Environmental Horticulture Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou, 510640, China. .
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Źródło:
BMC plant biology [BMC Plant Biol] 2021 Nov 23; Vol. 21 (1), pp. 558. Date of Electronic Publication: 2021 Nov 23.
Typ publikacji:
Comparative Study; Journal Article
MeSH Terms:
Biological Evolution*
Evolution, Molecular*
Genetic Variation*
Genome, Chloroplast*
Sequence Analysis, Protein*
Zingiberaceae/*genetics
China ; Phylogeny
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
nhKcr: a new bioinformatics tool for predicting crotonylation sites on human nonhistone proteins based on deep learning.
Autorzy:
Chen YZ; Laboratory of Tumor Cell Biology, Tianjin Medical University Cancer Institute and Hospital, Tianjin 300060, China.
Wang ZZ; Inner Mongolia University for Nationalities, China.
Wang Y; Shanghai Jiao Tong University, China.
Ying G; Laboratory of Tumor Cell Biology in Tianjin Medical University Cancer Institute and Hospital, Tianjin 300060, China.
Chen Z; Collaborative Innovation Center of Henan Grain Crops, Henan Agricultural University, China.
Song J; Monash Biomedicine Discovery Institute, Monash University, Australia.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2021 Nov 05; Vol. 22 (6).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Databases, Protein*
Deep Learning*
Histones*/genetics
Histones*/metabolism
Protein Processing, Post-Translational*
Sequence Analysis, Protein*
Software*
Computational Biology ; Humans
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Locating transcription factor binding sites by fully convolutional neural network.
Autorzy:
Zhang Q; Translational Medical Center for Stem Cell Therapy and Institute for Regenerative Medicine, Shanghai East Hospital, Tongji University, Shanghai, China.
Wang S; Computer Science and Technology, Tongji University, China.
Chen Z; University of Chinese Academy of Sciences, China.
He Y; Computer Science and Technology at Tongji University, China.
Liu Q; Translational Medical Center for Stem Cell Therapy and Institute for Regenerative Medicine, Shanghai East Hospital, Bioinformatics Department, School of Life Sciences and Technology, Tongji University, Shanghai, China.
Huang DS; Institute of Machines Learning and Systems Biology, Tongji University, China.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2021 Sep 02; Vol. 22 (5).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Chromatin Immunoprecipitation Sequencing*
Neural Networks, Computer*
Response Elements*
Sequence Analysis, DNA*
Sequence Analysis, Protein*
Transcription Factors*/genetics
Transcription Factors*/metabolism
A549 Cells ; Amino Acid Motifs ; Humans ; MCF-7 Cells
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Peptide Sequence Mapping around Bisecting GlcNAc-Bearing N -Glycans in Mouse Brain.
Autorzy:
Ohkawa Y; Department of Glyco-Oncology and Medical Biochemistry, Osaka International Cancer Institute, 3-1-69 Otemae, Chuo-ku, Osaka 541-8567, Japan.
Kizuka Y; Department of Glyco-Oncology and Medical Biochemistry, Osaka International Cancer Institute, 3-1-69 Otemae, Chuo-ku, Osaka 541-8567, Japan.; Center for Highly Advanced Integration of Nano and Life Sciences (G-CHAIN), Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan.; Institute for Glyco-Core Research (iGCORE), Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan.; Disease Glycomics Team, Global Research Cluster, RIKEN, 2-1 Hisosawa, Wako 351-0198, Japan.
Takata M; Graduate School of Integrated Sciences for Life, Hiroshima University, 1-3-1 Kagamiyama, Higashihiroshima, Hiroshima 739-8530, Japan.
Nakano M; Graduate School of Integrated Sciences for Life, Hiroshima University, 1-3-1 Kagamiyama, Higashihiroshima, Hiroshima 739-8530, Japan.
Ito E; Disease Glycomics Team, Global Research Cluster, RIKEN, 2-1 Hisosawa, Wako 351-0198, Japan.
Mishra SK; Glycoscience Group, National University of Ireland Galway, University Road, H91 TK33 Galway, Ireland.
Akatsuka H; Center for Highly Advanced Integration of Nano and Life Sciences (G-CHAIN), Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan.
Harada Y; Department of Glyco-Oncology and Medical Biochemistry, Osaka International Cancer Institute, 3-1-69 Otemae, Chuo-ku, Osaka 541-8567, Japan.
Taniguchi N; Department of Glyco-Oncology and Medical Biochemistry, Osaka International Cancer Institute, 3-1-69 Otemae, Chuo-ku, Osaka 541-8567, Japan.; Disease Glycomics Team, Global Research Cluster, RIKEN, 2-1 Hisosawa, Wako 351-0198, Japan.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2021 Aug 09; Vol. 22 (16). Date of Electronic Publication: 2021 Aug 09.
Typ publikacji:
Journal Article
MeSH Terms:
Sequence Analysis, Protein*
Acetylglucosamine/*metabolism
Brain/*metabolism
Cell Membrane/*metabolism
Peptides/*metabolism
Receptors, AMPA/*metabolism
Acetylglucosamine/genetics ; Animals ; Cell Membrane/genetics ; Glycosylation ; Mice ; Mice, Knockout ; N-Acetylglucosaminyltransferases/deficiency ; N-Acetylglucosaminyltransferases/metabolism ; Peptide Mapping ; Peptides/genetics ; Receptors, AMPA/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
PON-Sol2: Prediction of Effects of Variants on Protein Solubility.
Autorzy:
Yang Y; School of Computer Science and Technology, Soochow University, Suzhou 215006, China.
Zeng L; School of Computer Science and Technology, Soochow University, Suzhou 215006, China.; Collaborative Innovation Center of Novel Software Technology and Industrialization, Nanjing 210000, China.
Vihinen M; Department of Experimental Medical Science, Lund University, BMC B13, SE-221 84 Lund, Sweden.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2021 Jul 27; Vol. 22 (15). Date of Electronic Publication: 2021 Jul 27.
Typ publikacji:
Journal Article
MeSH Terms:
Amino Acid Substitution*
Sequence Analysis, Protein*
Software*
Predictive Value of Tests ; Recombinant Proteins/chemistry ; Recombinant Proteins/genetics ; Solubility
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
ITP-Pred: an interpretable method for predicting, therapeutic peptides with fused features low-dimension representation.
Autorzy:
Cai L; Hunan University.
Wang L; Hunan University.
Fu X; Hunan University.
Xia C; Anhui University of Science and Technology.
Zeng X; Hunan University.
Zou Q; University of Electronic Science and Technology of China.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2021 Jul 20; Vol. 22 (4).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Machine Learning*
Models, Genetic*
Sequence Analysis, Protein*
Peptides/*genetics
Peptides/chemistry ; Peptides/therapeutic use
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Systematic characterization and prediction of coenzyme A-associated proteins using sequence and network information.
Autorzy:
Fan BL; College of Informatics, Huazhong Agricultural University.
Jiang Z; College of Informatics, Huazhong Agricultural University.
Sun J; College of Informatics, Huazhong Agricultural University.
Liu R; College of Informatics, Huazhong Agricultural University.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2021 Jul 20; Vol. 22 (4).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Arabidopsis*/genetics
Arabidopsis*/metabolism
Arabidopsis Proteins*/genetics
Arabidopsis Proteins*/metabolism
Coenzyme A*/genetics
Coenzyme A*/metabolism
Databases, Protein*
Protein Interaction Maps*
Sequence Analysis, Protein*
Animals ; Humans ; Mice
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
AlgPred 2.0: an improved method for predicting allergenic proteins and mapping of IgE epitopes.
Autorzy:
Sharma N; Department of Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India.
Patiyal S; Department of Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India.
Dhall A; Department of Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India.
Pande A; Department of Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India.
Arora C; Department of Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India.
Raghava GPS; Department of Computational Biology, Indraprastha Institute of Information Technology, New Delhi, India.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2021 Jul 20; Vol. 22 (4).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Databases, Protein*
Epitope Mapping*
Hypersensitivity*
Sequence Analysis, Protein*
Software*
Allergens/*chemistry
Epitopes/*chemistry
Immunoglobulin E/*chemistry
Allergens/immunology ; Epitopes/immunology ; Humans ; Immunoglobulin E/immunology ; Predictive Value of Tests
Czasopismo naukowe
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Tytuł:
FireProtASR: A Web Server for Fully Automated Ancestral Sequence Reconstruction.
Autorzy:
Musil M; Loschmidt Laboratories, Masaryk University.
Khan RT; Loschmidt Laboratories, Masaryk University.
Beier A; Loschmidt Laboratories, Masaryk University.
Stourac J; Loschmidt Laboratories, Masaryk University.
Konegger H; MSCA.
Damborsky J; International Clinical Research Center at St. Ann's Teaching Hospital.
Bednar D; Loschmidt Laboratories, Masaryk University.
Pokaż więcej
Źródło:
Briefings in bioinformatics [Brief Bioinform] 2021 Jul 20; Vol. 22 (4).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Algorithms*
Databases, Protein*
Evolution, Molecular*
Sequence Analysis, Protein*
Software*
Proteins/*genetics
Computational Biology ; Sequence Alignment
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Wyświetlanie 1-20 z 3250

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