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Tytuł:
OrthoSNAP: A tree splitting and pruning algorithm for retrieving single-copy orthologs from gene family trees.
Autorzy:
Steenwyk JL; Vanderbilt University, Department of Biological Sciences, Nashville, Tennessee, United States of America.; Vanderbilt Evolutionary Studies Initiative, Vanderbilt University, Nashville, Tennessee, United States of America.
Goltz DC; Independent Researcher, Nashville, Tennessee, United States of America.
Buida TJ 3rd; Independent Researcher, Nashville, Tennessee, United States of America.
Li Y; Vanderbilt University, Department of Biological Sciences, Nashville, Tennessee, United States of America.; Vanderbilt Evolutionary Studies Initiative, Vanderbilt University, Nashville, Tennessee, United States of America.; Institute of Marine Science and Technology, Shandong University, Qingdao, China.
Shen XX; Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, China.
Rokas A; Vanderbilt University, Department of Biological Sciences, Nashville, Tennessee, United States of America.; Vanderbilt Evolutionary Studies Initiative, Vanderbilt University, Nashville, Tennessee, United States of America.; Heidelberg Institute for Theoretical Studies, Heidelberg, Germany.
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Źródło:
PLoS biology [PLoS Biol] 2022 Oct 13; Vol. 20 (10), pp. e3001827. Date of Electronic Publication: 2022 Oct 13 (Print Publication: 2022).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Evolution, Molecular*
Algorithms*
Phylogeny ; Pedigree ; Transcription Factors
Czasopismo naukowe
Tytuł:
Detection of low-load Epstein-Barr virus in blood samples by enriched recombinase aided amplification assay.
Autorzy:
Li JY; Hebei Medical University, No. 361 East Zhongshan Road, Shijiazhuang, 050031, Hebei, China.; Hebei General Hospital, No. 348 West Heping Road, Shijiazhuang, 050070, Hebei, China.; NHC Key Laboratory of Medical Virology and Viral Diseases, Chinese Center for Disease Control and Prevention, National Institute for Viral Disease Control and Prevention, No. 155, Changbai Street, Changping District, Beijing, 102206, China.
Chen XP; State Key Laboratory for Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Disease, Chinese Center for Disease Control and Prevention, National Institute for Communicable Disease Control and Prevention, No. 155, Changbai Street, Changping District, Beijing, 102206, China.
Tie YQ; Hebei Medical University, No. 361 East Zhongshan Road, Shijiazhuang, 050031, Hebei, China.; Hebei General Hospital, No. 348 West Heping Road, Shijiazhuang, 050070, Hebei, China.
Sun XL; Hebei General Hospital, No. 348 West Heping Road, Shijiazhuang, 050070, Hebei, China.; NHC Key Laboratory of Medical Virology and Viral Diseases, Chinese Center for Disease Control and Prevention, National Institute for Viral Disease Control and Prevention, No. 155, Changbai Street, Changping District, Beijing, 102206, China.; North China University of Science and Technology, No. 46 West Xinhua Road, Tangshan, 063009, Hebei, China.
Zhang RQ; NHC Key Laboratory of Medical Virology and Viral Diseases, Chinese Center for Disease Control and Prevention, National Institute for Viral Disease Control and Prevention, No. 155, Changbai Street, Changping District, Beijing, 102206, China.
He AN; NHC Key Laboratory of Medical Virology and Viral Diseases, Chinese Center for Disease Control and Prevention, National Institute for Viral Disease Control and Prevention, No. 155, Changbai Street, Changping District, Beijing, 102206, China.; North China University of Science and Technology, No. 46 West Xinhua Road, Tangshan, 063009, Hebei, China.
Nie MZ; Hebei Medical University, No. 361 East Zhongshan Road, Shijiazhuang, 050031, Hebei, China.; Hebei General Hospital, No. 348 West Heping Road, Shijiazhuang, 050070, Hebei, China.; NHC Key Laboratory of Medical Virology and Viral Diseases, Chinese Center for Disease Control and Prevention, National Institute for Viral Disease Control and Prevention, No. 155, Changbai Street, Changping District, Beijing, 102206, China.
Fan GH; NHC Key Laboratory of Medical Virology and Viral Diseases, Chinese Center for Disease Control and Prevention, National Institute for Viral Disease Control and Prevention, No. 155, Changbai Street, Changping District, Beijing, 102206, China.
Li FY; Hebei Medical University, No. 361 East Zhongshan Road, Shijiazhuang, 050031, Hebei, China.; Hebei General Hospital, No. 348 West Heping Road, Shijiazhuang, 050070, Hebei, China.; NHC Key Laboratory of Medical Virology and Viral Diseases, Chinese Center for Disease Control and Prevention, National Institute for Viral Disease Control and Prevention, No. 155, Changbai Street, Changping District, Beijing, 102206, China.
Tian FY; Hebei Medical University, No. 361 East Zhongshan Road, Shijiazhuang, 050031, Hebei, China.; Hebei General Hospital, No. 348 West Heping Road, Shijiazhuang, 050070, Hebei, China.; NHC Key Laboratory of Medical Virology and Viral Diseases, Chinese Center for Disease Control and Prevention, National Institute for Viral Disease Control and Prevention, No. 155, Changbai Street, Changping District, Beijing, 102206, China.
Shen XX; NHC Key Laboratory of Medical Virology and Viral Diseases, Chinese Center for Disease Control and Prevention, National Institute for Viral Disease Control and Prevention, No. 155, Changbai Street, Changping District, Beijing, 102206, China. .
Feng ZS; Hebei Medical University, No. 361 East Zhongshan Road, Shijiazhuang, 050031, Hebei, China. .; Hebei General Hospital, No. 348 West Heping Road, Shijiazhuang, 050070, Hebei, China. .
Ma XJ; NHC Key Laboratory of Medical Virology and Viral Diseases, Chinese Center for Disease Control and Prevention, National Institute for Viral Disease Control and Prevention, No. 155, Changbai Street, Changping District, Beijing, 102206, China. .
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Źródło:
AMB Express [AMB Express] 2022 Jun 11; Vol. 12 (1), pp. 71. Date of Electronic Publication: 2022 Jun 11.
Typ publikacji:
Journal Article
Czasopismo naukowe
Tytuł:
Dissecting Incongruence between Concatenation- and Quartet-Based Approaches in Phylogenomic Data.
Autorzy:
Shen XX; State Key Laboratory of Rice Biology and Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Department of Plant Protection, Zhejiang University, 866 Yuhangtang Road, Hangzhou 310058, China.; Institute of Insect Sciences, Department of Plant Protection, Zhejiang University, 866 Yuhangtang Road, Hangzhou 310058, China.
Steenwyk JL; Department of Biological Sciences, Vanderbilt University, VU Station B #35-1634, Nashville, TN 37235, USA.
Rokas A; Department of Biological Sciences, Vanderbilt University, VU Station B #35-1634, Nashville, TN 37235, USA.
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Źródło:
Systematic biology [Syst Biol] 2021 Aug 11; Vol. 70 (5), pp. 997-1014.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Phylogeny*
Animals ; Computer Simulation ; Likelihood Functions
Czasopismo naukowe
Tytuł:
PhyloFisher: A phylogenomic package for resolving eukaryotic relationships.
Autorzy:
Tice AK; Department of Biological Sciences, Mississippi State University, Mississippi State, Mississippi, United States of America.; Institute for Genomics, Biocomputing & Biotechnology, Mississippi State University, Mississippi State, Mississippi, United States of America.
Žihala D; Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic.
Pánek T; Department of Biological Sciences, Mississippi State University, Mississippi State, Mississippi, United States of America.; Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic.
Jones RE; Department of Biological Sciences, Mississippi State University, Mississippi State, Mississippi, United States of America.; Institute for Genomics, Biocomputing & Biotechnology, Mississippi State University, Mississippi State, Mississippi, United States of America.
Salomaki ED; Institute of Parasitology, Biology Centre Czech Academy of Sciences, České Budějovice, Czech Republic.
Nenarokov S; Institute of Parasitology, Biology Centre Czech Academy of Sciences, České Budějovice, Czech Republic.
Burki F; Department of Organismal Biology, Uppsala University, Uppsala, Sweden.; Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
Eliáš M; Department of Biology and Ecology, Faculty of Science, University of Ostrava, Ostrava, Czech Republic.
Eme L; Unité d'Ecologie, Systématique et Evolution, CNRS, Université Paris-Saclay, Paris, France.
Roger AJ; Department of Biochemistry and Molecular Biology, Dalhousie University, Halifax, Canada.
Rokas A; Department of Biological Sciences, Vanderbilt University, Nashville, Tennessee, United States of America.
Shen XX; State Key Laboratory of Rice Biology and Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, China.
Strassert JFH; Department of Organismal Biology, Uppsala University, Uppsala, Sweden.; Leibniz Institute of Freshwater Ecology and Inland Fisheries, Ecosystem Research, Berlin, Germany.
Kolísko M; Institute of Parasitology, Biology Centre Czech Academy of Sciences, České Budějovice, Czech Republic.; Faculty of Science, University of South Bohemia, České Budějovice, Czech Republic.
Brown MW; Department of Biological Sciences, Mississippi State University, Mississippi State, Mississippi, United States of America.; Institute for Genomics, Biocomputing & Biotechnology, Mississippi State University, Mississippi State, Mississippi, United States of America.
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Źródło:
PLoS biology [PLoS Biol] 2021 Aug 06; Vol. 19 (8), pp. e3001365. Date of Electronic Publication: 2021 Aug 06 (Print Publication: 2021).
Typ publikacji:
Evaluation Study; Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Phylogeny*
Software*
Eukaryota/*genetics
Czasopismo naukowe
Tytuł:
Clinicopathological, immunohistochemical and fluorescence in-situ hybridisation features of early subungual melanoma: an analysis of 65 cases.
Autorzy:
Ren M; Department of Pathology, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.
Ren J; Department of Pathology, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.
Cai X; Department of Pathology, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.
Shen XX; Department of Pathology, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.
Kong JC; Department of Pathology, First People's Hospital, Shanghai Jiaotong University, Shanghai, China.
Dai B; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.; Department of Urology, Fudan University Shanghai Cancer Center, Shanghai, China.
Kong YY; Department of Pathology, Fudan University Shanghai Cancer Center, Shanghai, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, China.
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Źródło:
Histopathology [Histopathology] 2021 Apr; Vol. 78 (5), pp. 717-726. Date of Electronic Publication: 2020 Dec 25.
Typ publikacji:
Journal Article
MeSH Terms:
Melanoma*/diagnosis
Melanoma*/pathology
Nail Diseases*/diagnosis
Nail Diseases*/pathology
Skin Neoplasms*/diagnosis
Skin Neoplasms*/pathology
Adult ; Biomarkers, Tumor/analysis ; Cohort Studies ; Female ; Humans ; Immunohistochemistry ; In Situ Hybridization, Fluorescence ; MART-1 Antigen/analysis ; Male ; Melanocytes/pathology ; Middle Aged ; Retrospective Studies ; S100 Proteins/analysis ; SOXE Transcription Factors/analysis ; Skin/pathology
Czasopismo naukowe
Tytuł:
Consuming Parasitized Aphids Alters the Life History and Decreases Predation Rate of Aphid Predator.
Autorzy:
Liu JF; State Key Laboratory Breeding Base of Green Pesticide and Agricultural Bioengineering, Key Laboratory of Green Pesticide and Agricultural Bioengineering, Ministry of Education, Guizhou University, Guiyang 550025, China.; Institute of Entomology, Guizhou University, Guizhou Provincial Key Laboratory for Agricultural Pest Management of the Mountainous Region, Scientific Observing and Experimental Station of Crop Pest in Guiyang, Ministry of Agriculture, Guiyang 550025, China.
Wang XQ; Institute of Entomology, Guizhou University, Guizhou Provincial Key Laboratory for Agricultural Pest Management of the Mountainous Region, Scientific Observing and Experimental Station of Crop Pest in Guiyang, Ministry of Agriculture, Guiyang 550025, China.
Beggs JR; Centre for Biodiversity and Biosecurity, School of Biological Sciences, The University of Auckland, Auckland 1072, New Zealand.
Ou HD; Institute of Entomology, Guizhou University, Guizhou Provincial Key Laboratory for Agricultural Pest Management of the Mountainous Region, Scientific Observing and Experimental Station of Crop Pest in Guiyang, Ministry of Agriculture, Guiyang 550025, China.
Yu XF; College of Tobacco Sciences, Guizhou University, Guiyang 550025, China.
Shen XX; Institute of Entomology, Guizhou University, Guizhou Provincial Key Laboratory for Agricultural Pest Management of the Mountainous Region, Scientific Observing and Experimental Station of Crop Pest in Guiyang, Ministry of Agriculture, Guiyang 550025, China.
Yang MF; Institute of Entomology, Guizhou University, Guizhou Provincial Key Laboratory for Agricultural Pest Management of the Mountainous Region, Scientific Observing and Experimental Station of Crop Pest in Guiyang, Ministry of Agriculture, Guiyang 550025, China.; College of Tobacco Sciences, Guizhou University, Guiyang 550025, China.
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Źródło:
Insects [Insects] 2020 Dec 17; Vol. 11 (12). Date of Electronic Publication: 2020 Dec 17.
Typ publikacji:
Journal Article
Czasopismo naukowe
Tytuł:
ClipKIT: A multiple sequence alignment trimming software for accurate phylogenomic inference.
Autorzy:
Steenwyk JL; Vanderbilt University, Department of Biological Sciences, Nashville, Tennessee, United States of America.
Buida TJ 3rd; Nashville, Tennessee, United States of America.
Li Y; Vanderbilt University, Department of Biological Sciences, Nashville, Tennessee, United States of America.
Shen XX; Ministry of Agriculture Key Lab of Molecular Biology of Crop Pathogens and Insects, Institute of Insect Sciences, Zhejiang University, Hangzhou, China.
Rokas A; Vanderbilt University, Department of Biological Sciences, Nashville, Tennessee, United States of America.
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Źródło:
PLoS biology [PLoS Biol] 2020 Dec 02; Vol. 18 (12), pp. e3001007. Date of Electronic Publication: 2020 Dec 02 (Print Publication: 2020).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Sequence Alignment/*methods
Sequence Analysis, DNA/*methods
Algorithms ; Computer Simulation ; Evolution, Molecular ; Models, Genetic ; Phylogeny ; Software
Czasopismo naukowe

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