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Tytuł :
Carrier-assisted One-pot Sample Preparation for Targeted Proteomics Analysis of Small Numbers of Human Cells.
Autorzy :
Martin K; Biological Sciences Division, Pacific Northwest National Laboratory.
Zhang T; Biological Sciences Division, Pacific Northwest National Laboratory.
Zhang P; NHC Key Laboratory of Cancer Proteomics, Department of Oncology, Xiangya Hospital, Central South University.
Chrisler WB; Biological Sciences Division, Pacific Northwest National Laboratory.
Thomas FL; Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory.
Liu F; Department of Critical Care Medicine, The First Affiliated Hospital of Nanchang University.
Liu T; Biological Sciences Division, Pacific Northwest National Laboratory.
Qian WJ; Biological Sciences Division, Pacific Northwest National Laboratory.
Smith RD; Biological Sciences Division, Pacific Northwest National Laboratory.
Shi T; Biological Sciences Division, Pacific Northwest National Laboratory; tujin.shi@pnnl.gov.
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Źródło :
Journal of visualized experiments : JoVE [J Vis Exp] 2020 Nov 06 (165). Date of Electronic Publication: 2020 Nov 06.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.; Video-Audio Media
MeSH Terms :
Proteomics/*methods
Alkylation ; Cell Count ; Cell Fractionation ; Cell Line ; Chromatography, Liquid ; Data Analysis ; ErbB Receptors/metabolism ; Flow Cytometry ; Humans ; MAP Kinase Signaling System ; Mass Spectrometry/methods ; Protein Denaturation ; Trypsin/metabolism
Czasopismo naukowe
Tytuł :
Discovery of Urinary Proteomic Signature for Differential Diagnosis of Acute Appendicitis.
Autorzy :
Zhao Y; School of Life Sciences, Peking University, Beijing 100871, China.; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China.
Yang L; Joint Center for Translational Medicine, Tianjin Baodi Hospital, Tianjin 301800, China.
Sun C; Joint Center for Translational Medicine, Tianjin Baodi Hospital, Tianjin 301800, China.
Li Y; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China.
He Y; Central Research Laboratory, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100110, China.
Zhang L; Center for Bioinformatics, East China Normal University, Shanghai 200241, China.
Shi T; Center for Bioinformatics, East China Normal University, Shanghai 200241, China.
Wang G; Joint Center for Translational Medicine, Tianjin Baodi Hospital, Tianjin 301800, China.
Men X; Joint Center for Translational Medicine, Tianjin Baodi Hospital, Tianjin 301800, China.
Sun W; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China.
He F; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China.
Qin J; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing 102206, China.; Alkek Center for Molecular Discovery, Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas 77030, USA.
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Źródło :
BioMed research international [Biomed Res Int] 2020 Apr 04; Vol. 2020, pp. 3896263. Date of Electronic Publication: 2020 Apr 04 (Print Publication: 2020).
Typ publikacji :
Journal Article
MeSH Terms :
Diagnosis, Differential*
Proteomics*
Abdomen, Acute/*diagnosis
Appendicitis/*diagnosis
Biomarkers/*urine
Acute Disease ; Adult ; Aged ; Aged, 80 and over ; Algorithms ; Bayes Theorem ; Case-Control Studies ; Chromatography, Liquid ; Female ; Humans ; Machine Learning ; Male ; Middle Aged ; Sensitivity and Specificity ; Support Vector Machine ; Tandem Mass Spectrometry ; Young Adult
Czasopismo naukowe
Tytuł :
Quantitative Phosphoproteomics Reveals System-Wide Phosphorylation Network Altered by Spry in Mouse Mammary Stromal Fibroblasts.
Autorzy :
Shi T; School of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China. .; CAS Center for Excellence in Molecular Cell Science, Shanghai Institute of Biochemistry and Cell Biology, Chinese Academy of Sciences, Shanghai 200031, China. .; University of Chinese Academy of Sciences, Beijing 100049, China. .
Yao L; School of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China. .
Han Y; School of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China. .
Hao P; School of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China. .
Lu P; School of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China. .
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Źródło :
International journal of molecular sciences [Int J Mol Sci] 2019 Oct 30; Vol. 20 (21). Date of Electronic Publication: 2019 Oct 30.
Typ publikacji :
Journal Article
MeSH Terms :
Mammary Glands, Animal/*metabolism
Membrane Proteins/*metabolism
Phosphoproteins/*metabolism
Proteomics/*methods
Animals ; Chromatography, Liquid ; Female ; Fibroblasts/cytology ; Fibroblasts/metabolism ; Mammary Glands, Animal/cytology ; Mice ; Protein Interaction Maps ; Signal Transduction ; Tandem Mass Spectrometry
Czasopismo naukowe
Tytuł :
High-Throughput Single Cell Proteomics Enabled by Multiplex Isobaric Labeling in a Nanodroplet Sample Preparation Platform.
Autorzy :
Dou M; Environmental Molecular Sciences Laboratory , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.
Clair G; Biological Sciences Division , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.
Tsai CF; Biological Sciences Division , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.
Xu K; Environmental Molecular Sciences Laboratory , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.
Chrisler WB; Biological Sciences Division , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.
Sontag RL; Biological Sciences Division , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.
Zhao R; Environmental Molecular Sciences Laboratory , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.
Moore RJ; Biological Sciences Division , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.
Liu T; Biological Sciences Division , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.
Pasa-Tolic L; Environmental Molecular Sciences Laboratory , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.
Smith RD; Biological Sciences Division , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.
Shi T; Biological Sciences Division , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.
Adkins JN; Biological Sciences Division , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.
Qian WJ; Biological Sciences Division , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.
Kelly RT; Environmental Molecular Sciences Laboratory , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.; Department of Chemistry and Biochemistry , Brigham Young University , Provo , Utah 84604 , United States.
Ansong C; Biological Sciences Division , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.
Zhu Y; Environmental Molecular Sciences Laboratory , Pacific Northwest National Laboratory , Richland , Washington 99354 , United States.
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Źródło :
Analytical chemistry [Anal Chem] 2019 Oct 15; Vol. 91 (20), pp. 13119-13127. Date of Electronic Publication: 2019 Sep 25.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Proteome/*analysis
Proteomics/*methods
Single-Cell Analysis/*methods
Animals ; Chromatography, Liquid ; Isotope Labeling ; Mice ; Microfluidics ; Principal Component Analysis ; Proteome/chemistry ; Tandem Mass Spectrometry/methods
Czasopismo naukowe
Tytuł :
Proteomic Insights into Phycobilisome Degradation, A Selective and Tightly Controlled Process in The Fast-Growing Cyanobacterium Synechococcus elongatus UTEX 2973.
Autorzy :
Nagarajan A; Department of Biology, Washington University, St. Louis, MO 63130, USA.
Zhou M; Environmental and Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Nguyen AY; Department of Biology, Washington University, St. Louis, MO 63130, USA.
Liberton M; Department of Biology, Washington University, St. Louis, MO 63130, USA.
Kedia K; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Shi T; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Piehowski P; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Shukla A; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Fillmore TL; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Nicora C; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Smith RD; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Koppenaal DW; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Jacobs JM; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Pakrasi HB; Department of Biology, Washington University, St. Louis, MO 63130, USA. .
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Źródło :
Biomolecules [Biomolecules] 2019 Aug 16; Vol. 9 (8). Date of Electronic Publication: 2019 Aug 16.
Typ publikacji :
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Proteomics*
Bacterial Proteins/*metabolism
Phycobilisomes/*metabolism
Synechococcus/*growth & development
Synechococcus/metabolism
SCR Organism :
Synechococcus elongatus
Czasopismo naukowe
Tytuł :
Proteomics identifies new therapeutic targets of early-stage hepatocellular carcinoma.
Autorzy :
Jiang Y; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.
Sun A; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.
Zhao Y; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.; College of Life Science and Bioengineering, Beijing University of Technology, Beijing, China.
Ying W; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.
Sun H; Department of Liver Surgery & Transplantation, Liver Cancer Institute and Zhongshan Hospital, Fudan University, Shanghai, China.
Yang X; Department of Liver Surgery & Transplantation, Liver Cancer Institute and Zhongshan Hospital, Fudan University, Shanghai, China.
Xing B; Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education/Beijing), Peking University Cancer Hospital & Institute, Beijing, China.
Sun W; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.
Ren L; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.
Hu B; Department of Liver Surgery & Transplantation, Liver Cancer Institute and Zhongshan Hospital, Fudan University, Shanghai, China.
Li C; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.
Zhang L; Center for Bioinformatics and Computational Biology, and the Institute of Biomedical Sciences, School of Life Sciences, East China Normal University, Shanghai, China.
Qin G; Shanghai Center for Bioinformation Technology, Shanghai Academy of Science and Technology, Shanghai, China.
Zhang M; Shanghai Center for Bioinformation Technology, Shanghai Academy of Science and Technology, Shanghai, China.
Chen N; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.
Zhang M; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.
Huang Y; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.
Zhou J; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.
Zhao Y; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.
Liu M; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.
Zhu X; Department of Liver Surgery & Transplantation, Liver Cancer Institute and Zhongshan Hospital, Fudan University, Shanghai, China.
Qiu Y; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.
Sun Y; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.
Huang C; Department of Liver Surgery & Transplantation, Liver Cancer Institute and Zhongshan Hospital, Fudan University, Shanghai, China.
Yan M; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.
Wang M; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.
Liu W; Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education/Beijing), Peking University Cancer Hospital & Institute, Beijing, China.
Tian F; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.
Xu H; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.
Zhou J; Department of Liver Surgery & Transplantation, Liver Cancer Institute and Zhongshan Hospital, Fudan University, Shanghai, China.
Wu Z; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.
Shi T; Center for Bioinformatics and Computational Biology, and the Institute of Biomedical Sciences, School of Life Sciences, East China Normal University, Shanghai, China.
Zhu W; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.
Qin J; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China.
Xie L; Shanghai Center for Bioinformation Technology, Shanghai Academy of Science and Technology, Shanghai, China.
Fan J; Department of Liver Surgery & Transplantation, Liver Cancer Institute and Zhongshan Hospital, Fudan University, Shanghai, China. .
Qian X; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China. .; College of Life Science and Bioengineering, Beijing University of Technology, Beijing, China. .
He F; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences (Beijing), Beijing Institute of Lifeomics, Beijing, China. .
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Corporate Authors :
Chinese Human Proteome Project (CNHPP) Consortium
Źródło :
Nature [Nature] 2019 Mar; Vol. 567 (7747), pp. 257-261. Date of Electronic Publication: 2019 Feb 27.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Proteomics*
Carcinoma, Hepatocellular/*drug therapy
Carcinoma, Hepatocellular/*metabolism
Liver Neoplasms/*drug therapy
Liver Neoplasms/*metabolism
Molecular Targeted Therapy/*trends
Animals ; Carcinoma, Hepatocellular/pathology ; Carcinoma, Hepatocellular/virology ; Cell Growth Processes ; Cell Movement ; Hepatitis B virus/pathogenicity ; Humans ; Liver Neoplasms/pathology ; Liver Neoplasms/virology ; Male ; Mice ; Mice, Inbred NOD ; Mice, SCID ; Neoplasm Staging ; Prognosis ; Sterol O-Acyltransferase/genetics
Czasopismo naukowe
Tytuł :
Carrier-Assisted Single-Tube Processing Approach for Targeted Proteomics Analysis of Low Numbers of Mammalian Cells.
Autorzy :
Zhang P; Key Laboratory of Cancer Proteomics of Chinese Ministry of Health, Xiangya Hospital , Central South University , Changsha , Hunan 410008 , People's Republic of China.
Gaffrey MJ
Zhu Y
Chrisler WB
Fillmore TL
Yi L
Nicora CD
Zhang T
Wu H
Jacobs J
Tang K
Kagan J; Cancer Biomarkers Research Group, Division of Cancer Prevention , National Cancer Institute , Bethesda , Maryland 20892 , United States.
Srivastava S; Cancer Biomarkers Research Group, Division of Cancer Prevention , National Cancer Institute , Bethesda , Maryland 20892 , United States.
Rodland KD
Qian WJ
Smith RD
Liu T
Wiley HS
Shi T
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Źródło :
Analytical chemistry [Anal Chem] 2019 Jan 15; Vol. 91 (2), pp. 1441-1451. Date of Electronic Publication: 2018 Dec 28.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Proteomics/*methods
Cell Count ; Chromatography, Liquid ; ErbB Receptors/metabolism ; Humans ; MCF-7 Cells ; Protein Denaturation ; Temperature
Czasopismo naukowe
Tytuł :
Targeted brain proteomics uncover multiple pathways to Alzheimer's dementia.
Autorzy :
Yu L; Rush Alzheimer's Disease Center, Rush University Medical Center, Chicago, IL.; Department of Neurological Sciences, Rush University Medical Center, Chicago, IL.
Petyuk VA; Pacific Northwest National Laboratory, Richland, WA.
Gaiteri C; Rush Alzheimer's Disease Center, Rush University Medical Center, Chicago, IL.; Department of Neurological Sciences, Rush University Medical Center, Chicago, IL.
Mostafavi S; University of British Columbia, Vancouver, British Columbia, Canada.
Young-Pearse T; Program in Translational NeuroPsychiatric Genomics, Institute for the Neurosciences, Departments of Neurology and Psychiatry, Brigham and Women's Hospital, Boston, MA.; Harvard Medical School, Boston, MA.
Shah RC; Rush Alzheimer's Disease Center, Rush University Medical Center, Chicago, IL.; Department of Family Medicine, Rush University Medical Center, Chicago, IL.
Buchman AS; Rush Alzheimer's Disease Center, Rush University Medical Center, Chicago, IL.; Department of Neurological Sciences, Rush University Medical Center, Chicago, IL.
Schneider JA; Rush Alzheimer's Disease Center, Rush University Medical Center, Chicago, IL.; Department of Neurological Sciences, Rush University Medical Center, Chicago, IL.; Department of Pathology, Rush University Medical Center, Chicago, IL.
Piehowski PD; Pacific Northwest National Laboratory, Richland, WA.
Sontag RL; Pacific Northwest National Laboratory, Richland, WA.
Fillmore TL; Pacific Northwest National Laboratory, Richland, WA.
Shi T; Pacific Northwest National Laboratory, Richland, WA.
Smith RD; Pacific Northwest National Laboratory, Richland, WA.
De Jager PL; Center for Translational and Computational Neuroimmunology, Columbia University Medical Center, New York, NY.; Cell Circuits Program, Broad Institute, Cambridge, MA.
Bennett DA; Rush Alzheimer's Disease Center, Rush University Medical Center, Chicago, IL.; Department of Neurological Sciences, Rush University Medical Center, Chicago, IL.
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Źródło :
Annals of neurology [Ann Neurol] 2018 Jul; Vol. 84 (1), pp. 78-88. Date of Electronic Publication: 2018 Jul 03.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Alzheimer Disease/*genetics
Alzheimer Disease/*pathology
Brain/*metabolism
Proteome/*metabolism
Proteomics/*methods
Aged, 80 and over ; Alzheimer Disease/complications ; Amyloid beta-Peptides/metabolism ; Autopsy ; Cognition Disorders/etiology ; DNA-Binding Proteins ; Female ; HSP27 Heat-Shock Proteins/metabolism ; Humans ; Insulin-Like Growth Factor Binding Protein 5/metabolism ; Male ; Nerve Tissue Proteins/metabolism ; Neuropsychological Tests ; Protein Interaction Maps ; Proteome/genetics ; Receptors, Cell Surface/metabolism ; Residence Characteristics
Czasopismo naukowe
Tytuł :
High-throughput serum proteomics for the identification of protein biomarkers of mortality in older men.
Autorzy :
Orwoll ES; Oregon Health & Science University, Portland, OR, USA.
Wiedrick J; Oregon Health & Science University, Portland, OR, USA.
Jacobs J; Biological Science Division, Pacific Northwest National Laboratory, Richland, WA, USA.
Baker ES; Biological Science Division, Pacific Northwest National Laboratory, Richland, WA, USA.
Piehowski P; Biological Science Division, Pacific Northwest National Laboratory, Richland, WA, USA.
Petyuk V; Biological Science Division, Pacific Northwest National Laboratory, Richland, WA, USA.
Gao Y; Biological Science Division, Pacific Northwest National Laboratory, Richland, WA, USA.
Shi T; Biological Science Division, Pacific Northwest National Laboratory, Richland, WA, USA.
Smith RD; Biological Science Division, Pacific Northwest National Laboratory, Richland, WA, USA.
Bauer DC; Department of Medicine, University of California, San Francisco, CA, USA.
Cummings SR; California Pacific Medical Center Research Institute, San Francisco, CA, USA.
Nielson CM; Oregon Health & Science University, Portland, OR, USA.
Lapidus J; Oregon Health & Science University, Portland, OR, USA.
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Corporate Authors :
Osteoporotic Fractures in Men Study (MrOS) Research Group
Źródło :
Aging cell [Aging Cell] 2018 Apr; Vol. 17 (2). Date of Electronic Publication: 2018 Feb 05.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Biomarkers/*chemistry
Proteomics/*methods
Humans ; Male ; Mortality
Czasopismo naukowe
Tytuł :
A proteomic landscape of diffuse-type gastric cancer.
Autorzy :
Ge S; The Joint Laboratory of Translational Medicine, National Center for Protein Sciences (Beijing) and Peking University Cancer Hospital, State Key Laboratory of Proteomics, Institute of Lifeomics, Beijing, 102206, China.; Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, 100142, China.
Xia X; The Joint Laboratory of Translational Medicine, National Center for Protein Sciences (Beijing) and Peking University Cancer Hospital, State Key Laboratory of Proteomics, Institute of Lifeomics, Beijing, 102206, China.
Ding C; The Joint Laboratory of Translational Medicine, National Center for Protein Sciences (Beijing) and Peking University Cancer Hospital, State Key Laboratory of Proteomics, Institute of Lifeomics, Beijing, 102206, China.; State Key Laboratory of Genetic Engineering, Human Phenome Institute, Institutes of Biomedical Sciences, and School of Life Sciences, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Zhen B; The Joint Laboratory of Translational Medicine, National Center for Protein Sciences (Beijing) and Peking University Cancer Hospital, State Key Laboratory of Proteomics, Institute of Lifeomics, Beijing, 102206, China.
Zhou Q; The Joint Laboratory of Translational Medicine, National Center for Protein Sciences (Beijing) and Peking University Cancer Hospital, State Key Laboratory of Proteomics, Institute of Lifeomics, Beijing, 102206, China.
Feng J; The Joint Laboratory of Translational Medicine, National Center for Protein Sciences (Beijing) and Peking University Cancer Hospital, State Key Laboratory of Proteomics, Institute of Lifeomics, Beijing, 102206, China.; Center for Bioinformatics, East China Normal University, Shanghai, 200241, China.
Yuan J; The Joint Laboratory of Translational Medicine, National Center for Protein Sciences (Beijing) and Peking University Cancer Hospital, State Key Laboratory of Proteomics, Institute of Lifeomics, Beijing, 102206, China.; Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, 100142, China.
Chen R; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.
Li Y; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.
Ge Z; Human Genome Sequencing Center, Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, TX, 77030, USA.
Ji J; Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, 100142, China.
Zhang L; Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, 100142, China.
Wang J; Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, 100142, China.
Li Z; Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, 100142, China.
Lai Y; Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, 100142, China.
Hu Y; Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, 100142, China.
Li Y; Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, 100142, China.
Li Y; Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, 100142, China.
Gao J; Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, 100142, China.
Chen L; General Hospital of Chinese People's Liberation Army, Beijing, 100853, China.
Xu J; Affiliated Hospital of Academy of Military Medical Sciences, Beijing, 100071, China.
Zhang C; Alkek Center for Molecular Discovery, Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.
Jung SY; Alkek Center for Molecular Discovery, Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.
Choi JM; Alkek Center for Molecular Discovery, Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.
Jain A; Alkek Center for Molecular Discovery, Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.
Liu M; The Joint Laboratory of Translational Medicine, National Center for Protein Sciences (Beijing) and Peking University Cancer Hospital, State Key Laboratory of Proteomics, Institute of Lifeomics, Beijing, 102206, China.
Song L; The Joint Laboratory of Translational Medicine, National Center for Protein Sciences (Beijing) and Peking University Cancer Hospital, State Key Laboratory of Proteomics, Institute of Lifeomics, Beijing, 102206, China.
Liu W; The Joint Laboratory of Translational Medicine, National Center for Protein Sciences (Beijing) and Peking University Cancer Hospital, State Key Laboratory of Proteomics, Institute of Lifeomics, Beijing, 102206, China.
Guo G; The Joint Laboratory of Translational Medicine, National Center for Protein Sciences (Beijing) and Peking University Cancer Hospital, State Key Laboratory of Proteomics, Institute of Lifeomics, Beijing, 102206, China.
Gong T; The Joint Laboratory of Translational Medicine, National Center for Protein Sciences (Beijing) and Peking University Cancer Hospital, State Key Laboratory of Proteomics, Institute of Lifeomics, Beijing, 102206, China.
Huang Y; The Joint Laboratory of Translational Medicine, National Center for Protein Sciences (Beijing) and Peking University Cancer Hospital, State Key Laboratory of Proteomics, Institute of Lifeomics, Beijing, 102206, China.
Qiu Y; The Joint Laboratory of Translational Medicine, National Center for Protein Sciences (Beijing) and Peking University Cancer Hospital, State Key Laboratory of Proteomics, Institute of Lifeomics, Beijing, 102206, China.
Huang W; The Joint Laboratory of Translational Medicine, National Center for Protein Sciences (Beijing) and Peking University Cancer Hospital, State Key Laboratory of Proteomics, Institute of Lifeomics, Beijing, 102206, China.; Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, 100142, China.
Shi T; Center for Bioinformatics, East China Normal University, Shanghai, 200241, China.
Zhu W; The Joint Laboratory of Translational Medicine, National Center for Protein Sciences (Beijing) and Peking University Cancer Hospital, State Key Laboratory of Proteomics, Institute of Lifeomics, Beijing, 102206, China.
Wang Y; The Joint Laboratory of Translational Medicine, National Center for Protein Sciences (Beijing) and Peking University Cancer Hospital, State Key Laboratory of Proteomics, Institute of Lifeomics, Beijing, 102206, China.; Alkek Center for Molecular Discovery, Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, 77030, USA.
He F; The Joint Laboratory of Translational Medicine, National Center for Protein Sciences (Beijing) and Peking University Cancer Hospital, State Key Laboratory of Proteomics, Institute of Lifeomics, Beijing, 102206, China. .; State Key Laboratory of Genetic Engineering, Human Phenome Institute, Institutes of Biomedical Sciences, and School of Life Sciences, Zhongshan Hospital, Fudan University, Shanghai, 200433, China. .
Shen L; The Joint Laboratory of Translational Medicine, National Center for Protein Sciences (Beijing) and Peking University Cancer Hospital, State Key Laboratory of Proteomics, Institute of Lifeomics, Beijing, 102206, China. .; Key Laboratory of Carcinogenesis and Translational Research (Ministry of Education), Peking University Cancer Hospital & Institute, Beijing, 100142, China. .
Qin J; The Joint Laboratory of Translational Medicine, National Center for Protein Sciences (Beijing) and Peking University Cancer Hospital, State Key Laboratory of Proteomics, Institute of Lifeomics, Beijing, 102206, China. .; State Key Laboratory of Genetic Engineering, Human Phenome Institute, Institutes of Biomedical Sciences, and School of Life Sciences, Zhongshan Hospital, Fudan University, Shanghai, 200433, China. .; Alkek Center for Molecular Discovery, Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, TX, 77030, USA. .
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Źródło :
Nature communications [Nat Commun] 2018 Mar 08; Vol. 9 (1), pp. 1012. Date of Electronic Publication: 2018 Mar 08.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Proteomics*
Genes, Neoplasm/*genetics
Neoplasm Proteins/*genetics
Signal Transduction/*genetics
Stomach Neoplasms/*genetics
Chemoradiotherapy, Adjuvant ; DNA Mutational Analysis ; Datasets as Topic ; Down-Regulation ; Exome/genetics ; Follow-Up Studies ; Gastrectomy ; Humans ; Immunohistochemistry ; Mutation ; Neoadjuvant Therapy/methods ; Neoplasm Staging ; Oligonucleotide Array Sequence Analysis ; Prognosis ; Sequence Analysis, DNA ; Stomach/pathology ; Stomach/surgery ; Stomach Neoplasms/mortality ; Stomach Neoplasms/pathology ; Stomach Neoplasms/therapy ; Survival Analysis ; Tandem Mass Spectrometry ; Up-Regulation
Czasopismo naukowe
Tytuł :
LC-SRM-Based Targeted Quantification of Urinary Protein Biomarkers.
Autorzy :
Gao Y; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.
Wang H; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.
Nicora CD; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.
Shi T; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.
Smith RD; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.
Sigdel TK; The Department of Surgery, University of California San Francisco, San Francisco, CA, USA.
Sarwal MM; The Department of Surgery, University of California San Francisco, San Francisco, CA, USA.
Camp DG 2nd; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA.
Qian WJ; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, WA, USA. .
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Źródło :
Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2018; Vol. 1788, pp. 145-156.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Chromatography, Liquid/*methods
Proteins/*analysis
Proteinuria/*urine
Proteomics/*methods
Amino Acid Sequence ; Biomarkers/analysis ; Biomarkers/urine ; Humans ; Isotope Labeling/methods ; Peptides/analysis ; Peptides/urine ; Urinalysis/methods ; Urine Specimen Collection/methods
Czasopismo naukowe
Tytuł :
Advances in microscale separations towards nanoproteomics applications.
Autorzy :
Yi L; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, United States.
Piehowski PD; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, United States.
Shi T; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, United States.
Smith RD; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, United States.
Qian WJ; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99352, United States. Electronic address: .
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Źródło :
Journal of chromatography. A [J Chromatogr A] 2017 Nov 10; Vol. 1523, pp. 40-48. Date of Electronic Publication: 2017 Jul 21.
Typ publikacji :
Journal Article; Review
MeSH Terms :
Proteomics/*trends
Chromatography, Liquid ; Electrophoresis, Capillary ; Mass Spectrometry ; Proteome/analysis ; Proteomics/instrumentation
Czasopismo naukowe
Tytuł :
Deep-Dive Targeted Quantification for Ultrasensitive Analysis of Proteins in Nondepleted Human Blood Plasma/Serum and Tissues.
Autorzy :
Nie S; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory , Richland, Washington 99352, United States.
Shi T; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory , Richland, Washington 99352, United States.
Fillmore TL; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory , Richland, Washington 99352, United States.
Schepmoes AA; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory , Richland, Washington 99352, United States.
Brewer H; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory , Richland, Washington 99352, United States.
Gao Y; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory , Richland, Washington 99352, United States.
Song E; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory , Richland, Washington 99352, United States.
Wang H; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory , Richland, Washington 99352, United States.
Rodland KD; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory , Richland, Washington 99352, United States.
Qian WJ; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory , Richland, Washington 99352, United States.
Smith RD; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory , Richland, Washington 99352, United States.
Liu T; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory , Richland, Washington 99352, United States.
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Źródło :
Analytical chemistry [Anal Chem] 2017 Sep 05; Vol. 89 (17), pp. 9139-9146. Date of Electronic Publication: 2017 Aug 11.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Blood Proteins/*chemistry
Immunoassay/*methods
Mass Spectrometry/*methods
Proteomics/*methods
Antibodies ; Chromatography, Reverse-Phase ; Humans ; Plasma/chemistry ; Prostate-Specific Antigen/blood ; Sensitivity and Specificity
Czasopismo naukowe
Tytuł :
Quantification of mutant SPOP proteins in prostate cancer using mass spectrometry-based targeted proteomics.
Autorzy :
Wang H; Biological Sciences Division, Pacific Northwest National Laboratory, P.O. Box 999, MSIN: K8-98, Richland, WA, 99354, USA.
Barbieri CE; Institute of Precision Medicine of Weill Cornell Medical College and New York Presbyterian Hospital, New York, NY, USA.
He J; Biological Sciences Division, Pacific Northwest National Laboratory, P.O. Box 999, MSIN: K8-98, Richland, WA, 99354, USA.
Gao Y; Biological Sciences Division, Pacific Northwest National Laboratory, P.O. Box 999, MSIN: K8-98, Richland, WA, 99354, USA.
Shi T; Biological Sciences Division, Pacific Northwest National Laboratory, P.O. Box 999, MSIN: K8-98, Richland, WA, 99354, USA.
Wu C; Biological Sciences Division, Pacific Northwest National Laboratory, P.O. Box 999, MSIN: K8-98, Richland, WA, 99354, USA.
Schepmoes AA; Biological Sciences Division, Pacific Northwest National Laboratory, P.O. Box 999, MSIN: K8-98, Richland, WA, 99354, USA.
Fillmore TL; Biological Sciences Division, Pacific Northwest National Laboratory, P.O. Box 999, MSIN: K8-98, Richland, WA, 99354, USA.
Chae SS; Institute of Precision Medicine of Weill Cornell Medical College and New York Presbyterian Hospital, New York, NY, USA.
Huang D; Institute of Precision Medicine of Weill Cornell Medical College and New York Presbyterian Hospital, New York, NY, USA.
Mosquera JM; Institute of Precision Medicine of Weill Cornell Medical College and New York Presbyterian Hospital, New York, NY, USA.
Qian WJ; Biological Sciences Division, Pacific Northwest National Laboratory, P.O. Box 999, MSIN: K8-98, Richland, WA, 99354, USA.
Smith RD; Biological Sciences Division, Pacific Northwest National Laboratory, P.O. Box 999, MSIN: K8-98, Richland, WA, 99354, USA.
Srivastava S; Division of Cancer Prevention, Cancer Biomarkers Research Group, National Cancer Institute, Bethesda, MD, USA.
Kagan J; Division of Cancer Prevention, Cancer Biomarkers Research Group, National Cancer Institute, Bethesda, MD, USA.
Camp DG 2nd; Biological Sciences Division, Pacific Northwest National Laboratory, P.O. Box 999, MSIN: K8-98, Richland, WA, 99354, USA.
Rodland KD; Biological Sciences Division, Pacific Northwest National Laboratory, P.O. Box 999, MSIN: K8-98, Richland, WA, 99354, USA.
Rubin MA; Institute of Precision Medicine of Weill Cornell Medical College and New York Presbyterian Hospital, New York, NY, USA.
Liu T; Biological Sciences Division, Pacific Northwest National Laboratory, P.O. Box 999, MSIN: K8-98, Richland, WA, 99354, USA. .
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Źródło :
Journal of translational medicine [J Transl Med] 2017 Aug 15; Vol. 15 (1), pp. 175. Date of Electronic Publication: 2017 Aug 15.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Mass Spectrometry/*methods
Mutation/*genetics
Nuclear Proteins/*genetics
Prostatic Neoplasms/*genetics
Proteomics/*methods
Repressor Proteins/*genetics
Amino Acid Sequence ; HEK293 Cells ; Humans ; Limit of Detection ; Male ; Peptides/chemistry ; Peptides/metabolism
Czasopismo naukowe
Tytuł :
Targeted proteomic assays for quantitation of proteins identified by proteogenomic analysis of ovarian cancer.
Autorzy :
Song E; Biological Sciences Division, Richland, WA 99354, USA.
Gao Y; Biological Sciences Division, Richland, WA 99354, USA.
Wu C; Biological Sciences Division, Richland, WA 99354, USA.
Shi T; Biological Sciences Division, Richland, WA 99354, USA.
Nie S; Biological Sciences Division, Richland, WA 99354, USA.
Fillmore TL; Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA 99354, USA.
Schepmoes AA; Biological Sciences Division, Richland, WA 99354, USA.
Gritsenko MA; Biological Sciences Division, Richland, WA 99354, USA.
Qian WJ; Biological Sciences Division, Richland, WA 99354, USA.
Smith RD; Biological Sciences Division, Richland, WA 99354, USA.
Rodland KD; Biological Sciences Division, Richland, WA 99354, USA.
Liu T; Biological Sciences Division, Richland, WA 99354, USA.
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Źródło :
Scientific data [Sci Data] 2017 Jul 19; Vol. 4, pp. 170091. Date of Electronic Publication: 2017 Jul 19.
Typ publikacji :
Dataset; Journal Article; Research Support, N.I.H., Extramural
MeSH Terms :
Ovarian Neoplasms*/genetics
Ovarian Neoplasms*/metabolism
Proteogenomics*
Proteomics*
Female ; Humans
Czasopismo naukowe
Tytuł :
Firmiana: towards a one-stop proteomic cloud platform for data processing and analysis.
Autorzy :
Feng J; State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, National Center for Protein Sciences (The PHOENIX Center, Beijing), Beijing, China.; The Center for Bioinformatics and Computational Biology, Shanghai Key Laboratory of Regulatory Biology, Institute of Biomedical Sciences and School of Life Sciences, East China Normal University, Shanghai, China.
Ding C; State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, National Center for Protein Sciences (The PHOENIX Center, Beijing), Beijing, China.; State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Institutes of Biomedical Sciences, Fudan University, Shanghai, China.
Qiu N; State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, National Center for Protein Sciences (The PHOENIX Center, Beijing), Beijing, China.; The Center for Bioinformatics and Computational Biology, Shanghai Key Laboratory of Regulatory Biology, Institute of Biomedical Sciences and School of Life Sciences, East China Normal University, Shanghai, China.
Ni X; State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, National Center for Protein Sciences (The PHOENIX Center, Beijing), Beijing, China.; The Center for Bioinformatics and Computational Biology, Shanghai Key Laboratory of Regulatory Biology, Institute of Biomedical Sciences and School of Life Sciences, East China Normal University, Shanghai, China.
Zhan D; State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, National Center for Protein Sciences (The PHOENIX Center, Beijing), Beijing, China.; The Center for Bioinformatics and Computational Biology, Shanghai Key Laboratory of Regulatory Biology, Institute of Biomedical Sciences and School of Life Sciences, East China Normal University, Shanghai, China.
Liu W; State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, National Center for Protein Sciences (The PHOENIX Center, Beijing), Beijing, China.
Xia X; State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, National Center for Protein Sciences (The PHOENIX Center, Beijing), Beijing, China.
Li P; The Center for Bioinformatics and Computational Biology, Shanghai Key Laboratory of Regulatory Biology, Institute of Biomedical Sciences and School of Life Sciences, East China Normal University, Shanghai, China.
Lu B; The Center for Bioinformatics and Computational Biology, Shanghai Key Laboratory of Regulatory Biology, Institute of Biomedical Sciences and School of Life Sciences, East China Normal University, Shanghai, China.
Zhao Q; State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, China.
Nie P; State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, China.
Song L; State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, National Center for Protein Sciences (The PHOENIX Center, Beijing), Beijing, China.
Zhou Q; State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, National Center for Protein Sciences (The PHOENIX Center, Beijing), Beijing, China.
Lai M; State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, National Center for Protein Sciences (The PHOENIX Center, Beijing), Beijing, China.
Guo G; State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, National Center for Protein Sciences (The PHOENIX Center, Beijing), Beijing, China.
Zhu W; State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, National Center for Protein Sciences (The PHOENIX Center, Beijing), Beijing, China.
Ren J; State Key Laboratory of Biocontrol, School of Life Sciences, Sun Yat-sen University, Guangzhou, China.
Shi T; The Center for Bioinformatics and Computational Biology, Shanghai Key Laboratory of Regulatory Biology, Institute of Biomedical Sciences and School of Life Sciences, East China Normal University, Shanghai, China.
Qin J; State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine, National Center for Protein Sciences (The PHOENIX Center, Beijing), Beijing, China.; State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Institutes of Biomedical Sciences, Fudan University, Shanghai, China.
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Źródło :
Nature biotechnology [Nat Biotechnol] 2017 May 09; Vol. 35 (5), pp. 409-412.
Typ publikacji :
Letter; Research Support, Non-U.S. Gov't
MeSH Terms :
Cloud Computing*
Software*
Proteomics/*methods
Data Mining/methods ; Humans
Raport
Tytuł :
Simultaneous Proteomic Discovery and Targeted Monitoring using Liquid Chromatography, Ion Mobility Spectrometry, and Mass Spectrometry.
Autorzy :
Burnum-Johnson KE; From the ‡Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington.
Nie S; From the ‡Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington.
Casey CP; From the ‡Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington.
Monroe ME; From the ‡Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington.
Orton DJ; From the ‡Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington.
Ibrahim YM; From the ‡Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington.
Gritsenko MA; From the ‡Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington.
Clauss TR; From the ‡Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington.
Shukla AK; From the ‡Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington.
Moore RJ; From the ‡Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington.
Purvine SO; From the ‡Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington.
Shi T; From the ‡Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington.
Qian W; From the ‡Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington.
Liu T; From the ‡Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington.
Baker ES; From the ‡Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington .
Smith RD; From the ‡Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington .
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Źródło :
Molecular & cellular proteomics : MCP [Mol Cell Proteomics] 2016 Dec; Vol. 15 (12), pp. 3694-3705. Date of Electronic Publication: 2016 Sep 25.
Typ publikacji :
Comparative Study; Journal Article
MeSH Terms :
Breast Neoplasms/*metabolism
Peptides/*analysis
Proteome/*isolation & purification
Proteomics/*methods
Animals ; Chromatography, Liquid/methods ; Female ; Humans ; Mass Spectrometry/methods ; Mice ; Neoplasm Transplantation
Czasopismo naukowe
Tytuł :
Advances in targeted proteomics and applications to biomedical research.
Autorzy :
Shi T; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA.
Song E; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA.
Nie S; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA.
Rodland KD; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA.
Liu T; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA.
Qian WJ; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA.
Smith RD; Biological Sciences Division and Environmental Molecular Sciences Laboratory, Pacific Northwest National Laboratory, Richland, WA, USA.
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Źródło :
Proteomics [Proteomics] 2016 Aug; Vol. 16 (15-16), pp. 2160-82.
Typ publikacji :
Journal Article; Review; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Mass Spectrometry/*methods
Proteomics/*methods
Animals ; Biomarkers/analysis ; Biomarkers/blood ; Humans ; Signal Transduction/physiology
Czasopismo naukowe
Tytuł :
Multidimensional Proteomics Reveals a Role of UHRF2 in the Regulation of Epithelial-Mesenchymal Transition (EMT).
Autorzy :
Lai M; From the ‡State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine; National Center for Protein Sciences (Beijing); National Engineering Research Center for Protein Drugs, Beijing 102206, China;
Liang L; From the ‡State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine; National Center for Protein Sciences (Beijing); National Engineering Research Center for Protein Drugs, Beijing 102206, China;
Chen J; §Center for Bioinformatics and Computational Biology, and the Institute of Biomedical Sciences, College of Life Science, East China Normal University, Shanghai, China.
Qiu N; §Center for Bioinformatics and Computational Biology, and the Institute of Biomedical Sciences, College of Life Science, East China Normal University, Shanghai, China.
Ge S; ¶Department of Gastrointestinal Oncology, Key laboratory of Carcinogenesis and Translational Research (Ministry of Education/Beijing), Peking University Cancer Hospital and Institute, Beijing 100142, China.
Ji S; From the ‡State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine; National Center for Protein Sciences (Beijing); National Engineering Research Center for Protein Drugs, Beijing 102206, China;
Shi T; §Center for Bioinformatics and Computational Biology, and the Institute of Biomedical Sciences, College of Life Science, East China Normal University, Shanghai, China.
Zhen B; From the ‡State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine; National Center for Protein Sciences (Beijing); National Engineering Research Center for Protein Drugs, Beijing 102206, China;
Liu M; From the ‡State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine; National Center for Protein Sciences (Beijing); National Engineering Research Center for Protein Drugs, Beijing 102206, China;
Ding C; From the ‡State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine; National Center for Protein Sciences (Beijing); National Engineering Research Center for Protein Drugs, Beijing 102206, China;
Wang Y; ‖Alkek Center for Molecular Discovery, Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas 77030.
Qin J; From the ‡State Key Laboratory of Proteomics, Beijing Proteome Research Center, Beijing Institute of Radiation Medicine; National Center for Protein Sciences (Beijing); National Engineering Research Center for Protein Drugs, Beijing 102206, China; ‖Alkek Center for Molecular Discovery, Verna and Marrs McLean Department of Biochemistry and Molecular Biology, Department of Molecular and Cellular Biology, Baylor College of Medicine, Houston, Texas 77030 .
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Źródło :
Molecular & cellular proteomics : MCP [Mol Cell Proteomics] 2016 Jul; Vol. 15 (7), pp. 2263-78. Date of Electronic Publication: 2016 Apr 25.
Typ publikacji :
Journal Article
MeSH Terms :
Epithelial-Mesenchymal Transition*
Proteomics/*methods
Stomach Neoplasms/*metabolism
Transcription Factors/*metabolism
Ubiquitin-Protein Ligases/*metabolism
Antigens, CD ; Binding Sites ; Cadherins/genetics ; Cadherins/metabolism ; Cell Adhesion ; Cell Line, Tumor ; Cell Movement ; Gene Expression Regulation, Neoplastic ; Humans ; Promoter Regions, Genetic ; Transcription Factor 7-Like 2 Protein/genetics ; Transcription Factor 7-Like 2 Protein/metabolism ; Transcription Factors/genetics ; Ubiquitin-Protein Ligases/chemistry ; Up-Regulation
Czasopismo naukowe
Tytuł :
Recommendations for the Generation, Quantification, Storage, and Handling of Peptides Used for Mass Spectrometry-Based Assays.
Autorzy :
Hoofnagle AN; University of Washington, Seattle, WA; .
Whiteaker JR; Fred Hutchinson Cancer Research Center, Seattle, WA;
Carr SA; Broad Institute, Cambridge, MA;
Kuhn E; Broad Institute, Cambridge, MA;
Liu T; Pacific Northwest National Laboratory, Richland, WA;
Massoni SA; New England Peptide, Inc., Gardner, MA;
Thomas SN; Johns Hopkins University, Baltimore, MD;
Townsend RR; Washington University, St Louis, MO;
Zimmerman LJ; Vanderbilt University, Nashville, TN;
Boja E; National Cancer Institute, Bethesda, MD;
Chen J; Johns Hopkins University, Baltimore, MD;
Crimmins DL; Washington University, St Louis, MO;
Davies SR; Washington University, St Louis, MO;
Gao Y; Pacific Northwest National Laboratory, Richland, WA;
Hiltke TR; National Cancer Institute, Bethesda, MD;
Ketchum KA; ESAC, Inc., Rockville, MD;
Kinsinger CR; National Cancer Institute, Bethesda, MD;
Mesri M; National Cancer Institute, Bethesda, MD;
Meyer MR; Washington University, St Louis, MO;
Qian WJ; Pacific Northwest National Laboratory, Richland, WA;
Schoenherr RM; Fred Hutchinson Cancer Research Center, Seattle, WA;
Scott MG; Washington University, St Louis, MO;
Shi T; Pacific Northwest National Laboratory, Richland, WA;
Whiteley GR; Frederick National Laboratory for Cancer Research, Frederick, MD;
Wrobel JA; University of North Carolina School of Medicine, Chapel Hill, NC;
Wu C; Pacific Northwest National Laboratory, Richland, WA;
Ackermann BL; Eli Lilly and Company, Indianapolis, IN;
Aebersold R; Institute of Molecular Systems Biology, ETH Zurich, Zurich, Switzerland;
Barnidge DR; Mayo Clinic College of Medicine, Rochester, MN;
Bunk DM; NIST, Gaithersburg, MD;
Clarke N; Quest Diagnostics, San Juan Capistrano, CA;
Fishman JB; 21st Century Biochemicals, Inc., Marlborough, MA;
Grant RP; Laboratory Corporation of America Holdings, Inc., Burlington, NC;
Kusebauch U; Institute for Systems Biology, Seattle, WA;
Kushnir MM; University of Utah and ARUP Laboratories, Salt Lake City, UT;
Lowenthal MS; NIST, Gaithersburg, MD;
Moritz RL; Institute for Systems Biology, Seattle, WA;
Neubert H; Pfizer, Inc., Andover, MA;
Patterson SD; Gilead Sciences, Inc., Foster City, CA;
Rockwood AL; University of Utah and ARUP Laboratories, Salt Lake City, UT;
Rogers J; Thermo Fisher Scientific, Rockford, IL;
Singh RJ; Mayo Clinic College of Medicine, Rochester, MN;
Van Eyk JE; Cedars Sinai Medical Center, Los Angeles, CA;
Wong SH; Wake Forest School of Medicine, Winston-Salem, NC;
Zhang S; Enanta Pharmaceuticals, Watertown, MA;
Chan DW; Johns Hopkins University, Baltimore, MD;
Chen X; University of North Carolina School of Medicine, Chapel Hill, NC;
Ellis MJ; Baylor College of Medicine, Houston, TX.
Liebler DC; Vanderbilt University, Nashville, TN;
Rodland KD; Pacific Northwest National Laboratory, Richland, WA;
Rodriguez H; National Cancer Institute, Bethesda, MD;
Smith RD; Pacific Northwest National Laboratory, Richland, WA;
Zhang Z; Johns Hopkins University, Baltimore, MD;
Zhang H; Johns Hopkins University, Baltimore, MD;
Paulovich AG; Fred Hutchinson Cancer Research Center, Seattle, WA; .
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Źródło :
Clinical chemistry [Clin Chem] 2016 Jan; Vol. 62 (1), pp. 48-69.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms :
Clinical Laboratory Techniques*
Mass Spectrometry*
Proteomics*
Specimen Handling*
Peptides/*analysis
Guidelines as Topic ; Humans ; Peptides/isolation & purification ; Research Personnel
Czasopismo naukowe

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