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Tytuł :
ATACdb: a comprehensive human chromatin accessibility database.
Autorzy :
Wang F; School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China.
Bai X; School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China.
Wang Y; School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China.
Jiang Y; School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China.
Ai B; School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China.
Zhang Y; School of Physics and Electronic Engineering, Northeast Petroleum University, Daqing 163318, China.
Liu Y; School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China.
Xu M; School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China.
Wang Q; School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China.
Han X; School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China.
Pan Q; School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China.
Li Y; School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China.
Li X; School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China.
Zhang J; School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China.
Zhao J; School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China.
Zhang G; School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China.
Feng C; School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China.
Zhu J; School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China.
Li C; School of Medical Informatics, Daqing Campus, Harbin Medical University, Daqing 163319, China.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2021 Jan 08; Vol. 49 (D1), pp. D55-D64.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Databases, Genetic*
Software*
Chromatin/*genetics
Computational Biology/*methods
Chromatin/metabolism ; High-Throughput Nucleotide Sequencing ; Humans ; Molecular Sequence Annotation ; Sequence Analysis, DNA ; Software Design ; Web Browser
Czasopismo naukowe
Tytuł :
Evaluation of a software for automatic delineation of the mammary gland and organs at risk in patients treated for breast cancer in lateral position.
Autorzy :
Msika R; Department of Radiation Oncology, institut Curie, 26, rue d'Ulm, 75005 Paris, France.
Tkatchenko N; Department of Radiation Oncology, institut Curie, 26, rue d'Ulm, 75005 Paris, France.
Robilliard M; Department of Radiation Oncology, institut Curie, 26, rue d'Ulm, 75005 Paris, France.
Fourquet A; Department of Radiation Oncology, institut Curie, 26, rue d'Ulm, 75005 Paris, France.
Kirova Y; Department of Radiation Oncology, institut Curie, 26, rue d'Ulm, 75005 Paris, France. Electronic address: .
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Źródło :
Cancer radiotherapie : journal de la Societe francaise de radiotherapie oncologique [Cancer Radiother] 2020 Dec; Vol. 24 (8), pp. 799-804. Date of Electronic Publication: 2020 Oct 09.
Typ publikacji :
Comparative Study; Evaluation Study; Journal Article
MeSH Terms :
Software Validation*
Breast/*diagnostic imaging
Organs at Risk/*diagnostic imaging
Patient Positioning/*methods
Unilateral Breast Neoplasms/*diagnostic imaging
Unilateral Breast Neoplasms/*radiotherapy
Automation ; Female ; Heart/diagnostic imaging ; Humans ; Lung/diagnostic imaging ; Medical Illustration ; Radiation Oncologists ; Software
Czasopismo naukowe
Tytuł :
Evaluation of a delineation software for cardiac atlas-based autosegmentation: An example of the use of artificial intelligence in modern radiotherapy.
Autorzy :
Loap P; Department of radiation oncology, institut Curie, 26, rue d'Ulm, 75006 Paris, France. Electronic address: .
Tkatchenko N; Department of radiation oncology, institut Curie, 26, rue d'Ulm, 75006 Paris, France.
Kirova Y; Department of radiation oncology, institut Curie, 26, rue d'Ulm, 75006 Paris, France.
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Źródło :
Cancer radiotherapie : journal de la Societe francaise de radiotherapie oncologique [Cancer Radiother] 2020 Dec; Vol. 24 (8), pp. 826-833. Date of Electronic Publication: 2020 Nov 02.
Typ publikacji :
Comparative Study; Journal Article
MeSH Terms :
Artificial Intelligence*
Medical Illustration*
Software Validation*
Heart/*diagnostic imaging
Unilateral Breast Neoplasms/*radiotherapy
Female ; Heart/anatomy & histology ; Heart/radiation effects ; Heart Ventricles/anatomy & histology ; Heart Ventricles/diagnostic imaging ; Humans ; Radiation Injuries/prevention & control ; Software
Czasopismo naukowe
Tytuł :
Forecast UTI: application for predicting intensive care unit beds in the context of the COVID-19 pandemic.
Autorzy :
Salles Neto LL; Universidade Federal de São Paulo, Instituto de Ciência e Tecnologia, São José dos Campos, SP, Brasil.
Martins CB; Universidade Federal de São Paulo, Escola Paulista de Medicina, São Paulo, SP, Brasil.
Chaves AA; Universidade Federal de São Paulo, Instituto de Ciência e Tecnologia, São José dos Campos, SP, Brasil.
Konstantyner TCRO; Universidade Federal de São Paulo, Escola Paulista de Medicina, São Paulo, SP, Brasil.
Yanasse HH; Universidade Federal de São Paulo, Instituto de Ciência e Tecnologia, São José dos Campos, SP, Brasil.
Campos CBL; Universidade Federal de São Paulo, Instituto de Ciência e Tecnologia, São José dos Campos, SP, Brasil.
Bellini AJO; Universidade Federal de São Paulo, Instituto de Ciência e Tecnologia, São José dos Campos, SP, Brasil.
Butkeraites RB; Universidade Federal de São Paulo, Instituto de Ciência e Tecnologia, São José dos Campos, SP, Brasil.
Correia L; Universidade Federal de São Paulo, Instituto de Ciência e Tecnologia, São José dos Campos, SP, Brasil.
Magro IL; Universidade Federal de São Paulo, Instituto de Ciência e Tecnologia, São José dos Campos, SP, Brasil.
Soares FDS; Universidade Federal de São Paulo, Instituto de Ciência e Tecnologia, São José dos Campos, SP, Brasil.
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Transliterated Title :
Forecast UTI: aplicativo para previsão de leitos de unidades de terapia intensiva no contexto da pandemia de COVID-19.
Źródło :
Epidemiologia e servicos de saude : revista do Sistema Unico de Saude do Brasil [Epidemiol Serv Saude] 2020 Sep 25; Vol. 29 (4), pp. e2020391. Date of Electronic Publication: 2020 Sep 25 (Print Publication: 2020).
Typ publikacji :
Journal Article
MeSH Terms :
Betacoronavirus*
Software*
Bed Occupancy/*statistics & numerical data
Coronavirus Infections/*epidemiology
Hospital Bed Capacity/*statistics & numerical data
Intensive Care Units/*statistics & numerical data
Pneumonia, Viral/*epidemiology
Beds/supply & distribution ; Brazil/epidemiology ; COVID-19 ; Decision Making ; Forecasting ; Humans ; Pandemics ; SARS-CoV-2 ; Software Design
Czasopismo naukowe
Tytuł :
openPrimeR for multiplex amplification of highly diverse templates.
Autorzy :
Kreer C; Laboratory of Experimental Immunology, Institute of Virology, Faculty of Medicine and University Hospital Cologne, University of Cologne, 50931 Cologne, Germany; Center for Molecular Medicine Cologne (CMMC), University of Cologne, 50931 Cologne, Germany.
Döring M; Department of Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarland Informatics Campus, 66123 Saarbrücken, Germany.
Lehnen N; Laboratory of Experimental Immunology, Institute of Virology, Faculty of Medicine and University Hospital Cologne, University of Cologne, 50931 Cologne, Germany; Center for Molecular Medicine Cologne (CMMC), University of Cologne, 50931 Cologne, Germany; German Center for Infection Research (DZIF), partner site Bonn-Cologne, Cologne, Germany.
Ercanoglu MS; Laboratory of Experimental Immunology, Institute of Virology, Faculty of Medicine and University Hospital Cologne, University of Cologne, 50931 Cologne, Germany; Center for Molecular Medicine Cologne (CMMC), University of Cologne, 50931 Cologne, Germany.
Gieselmann L; Laboratory of Experimental Immunology, Institute of Virology, Faculty of Medicine and University Hospital Cologne, University of Cologne, 50931 Cologne, Germany; Center for Molecular Medicine Cologne (CMMC), University of Cologne, 50931 Cologne, Germany.
Luca D; Laboratory of Experimental Immunology, Institute of Virology, Faculty of Medicine and University Hospital Cologne, University of Cologne, 50931 Cologne, Germany; Center for Molecular Medicine Cologne (CMMC), University of Cologne, 50931 Cologne, Germany.
Jain K; Laboratory of Experimental Immunology, Institute of Virology, Faculty of Medicine and University Hospital Cologne, University of Cologne, 50931 Cologne, Germany; Center for Molecular Medicine Cologne (CMMC), University of Cologne, 50931 Cologne, Germany.
Schommers P; Laboratory of Experimental Immunology, Institute of Virology, Faculty of Medicine and University Hospital Cologne, University of Cologne, 50931 Cologne, Germany; German Center for Infection Research (DZIF), partner site Bonn-Cologne, Cologne, Germany; Department I of Internal Medicine, Faculty of Medicine and University Hospital Cologne, University of Cologne, 50937 Cologne, Germany.
Pfeifer N; Department of Computational Biology and Applied Algorithmics, Max Planck Institute for Informatics, Saarland Informatics Campus, 66123 Saarbrücken, Germany; Methods in Medical Informatics, Department of Computer Science, University of Tübingen, 72076 Tübingen, Germany; Medical Faculty, University of Tübingen, 72076 Tübingen, Germany; German Center for Infection Research (DZIF), partner site Tübingen, Tübingen, Germany.
Klein F; Laboratory of Experimental Immunology, Institute of Virology, Faculty of Medicine and University Hospital Cologne, University of Cologne, 50931 Cologne, Germany; Center for Molecular Medicine Cologne (CMMC), University of Cologne, 50931 Cologne, Germany; German Center for Infection Research (DZIF), partner site Bonn-Cologne, Cologne, Germany. Electronic address: .
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Źródło :
Journal of immunological methods [J Immunol Methods] 2020 May; Vol. 480, pp. 112752. Date of Electronic Publication: 2020 Jan 25.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA Primers*
Genes, Immunoglobulin Heavy Chain*
Genes, Immunoglobulin Light Chain*
Multiplex Polymerase Chain Reaction*
Software Design*
Templates, Genetic*
HIV Infections/*immunology
Case-Control Studies ; Gene Library ; HIV Infections/genetics ; HIV Infections/virology ; HIV-1/immunology ; Host-Pathogen Interactions ; Humans ; Proof of Concept Study ; Software Validation
Czasopismo naukowe
Tytuł :
Empirical study of the relationship between design patterns and code smells.
Autorzy :
Alfadel M; Department of Computer Science and Software Engineering, Concordia University, Montreal, Canada.
Aljasser K; Information and Computer Science Department, King Fahd University of Petroleum and Minerals, Dhahran, Saudi Arabia.
Alshayeb M; Information and Computer Science Department, King Fahd University of Petroleum and Minerals, Dhahran, Saudi Arabia.
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Źródło :
PloS one [PLoS One] 2020 Apr 16; Vol. 15 (4), pp. e0231731. Date of Electronic Publication: 2020 Apr 16 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Software Design*
Data Analysis ; Data Collection/methods ; Programming Languages ; Software/standards ; Software/statistics & numerical data ; Software Validation
Czasopismo naukowe
Tytuł :
TabSINT : open-source mobile software for distributed studies of hearing.
Autorzy :
Shapiro ML; Creare LLC, Hanover, NH, USA.
Norris JA; Creare LLC, Hanover, NH, USA.
Wilbur JC; Creare LLC, Hanover, NH, USA.
Brungart DS; Audiology and Speech Center, Walter Reed National Military Medical Center, Bethesda, MD, USA.
Clavier OH; Creare LLC, Hanover, NH, USA.
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Źródło :
International journal of audiology [Int J Audiol] 2020 Feb; Vol. 59 (sup1), pp. S12-S19. Date of Electronic Publication: 2019 Dec 17.
Typ publikacji :
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Audiology*
Medical Informatics Applications*
Software*
Biomedical Research/*methods
Database Management Systems ; Hearing ; Humans ; Internet ; Software Design
Czasopismo naukowe
Tytuł :
A Zipf-plot based normalization method for high-throughput RNA-seq data.
Autorzy :
Wang B; Department of Mathematics and Statistics, University of South Alabama, Mobile, AL, United States of America.
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Źródło :
PloS one [PLoS One] 2020 Apr 09; Vol. 15 (4), pp. e0230594. Date of Electronic Publication: 2020 Apr 09 (Print Publication: 2020).
Typ publikacji :
Comparative Study; Evaluation Study; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Software Design*
Computational Biology/*standards
Gene Expression Profiling/*standards
RNA-Seq/*standards
Sequence Analysis, RNA/*standards
Cell Line ; Computational Biology/methods ; Databases, Genetic ; Gene Expression Profiling/methods ; Gene Expression Regulation ; High-Throughput Nucleotide Sequencing/methods ; High-Throughput Nucleotide Sequencing/standards ; Humans ; RNA-Seq/methods ; Reference Standards ; Reference Values ; Sequence Analysis, RNA/methods ; Software ; Transcriptome ; Whole Exome Sequencing/methods ; Whole Exome Sequencing/standards
Czasopismo naukowe
Tytuł :
Standardized phylogenetic and molecular evolutionary analysis applied to species across the microbial tree of life.
Autorzy :
Shakya M; Bioscience Division, Los Alamos National Laboratory, MS-M888, Los Alamos, NM, 87545, USA. .
Ahmed SA; Bioscience Division, Los Alamos National Laboratory, MS-M888, Los Alamos, NM, 87545, USA.
Davenport KW; Bioscience Division, Los Alamos National Laboratory, MS-M888, Los Alamos, NM, 87545, USA.
Flynn MC; Bioscience Division, Los Alamos National Laboratory, MS-M888, Los Alamos, NM, 87545, USA.
Lo CC; Bioscience Division, Los Alamos National Laboratory, MS-M888, Los Alamos, NM, 87545, USA.
Chain PSG; Bioscience Division, Los Alamos National Laboratory, MS-M888, Los Alamos, NM, 87545, USA. .
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Źródło :
Scientific reports [Sci Rep] 2020 Feb 03; Vol. 10 (1), pp. 1723. Date of Electronic Publication: 2020 Feb 03.
Typ publikacji :
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Software*
Burkholderia/*genetics
Ebolavirus/*genetics
Escherichia/*genetics
High-Throughput Nucleotide Sequencing/*methods
Saccharomyces/*genetics
Algorithms ; Biological Evolution ; Chromosome Mapping ; Computational Biology ; Datasets as Topic ; Evolution, Molecular ; Metagenome ; Phylogeny ; Software Validation
Czasopismo naukowe
Tytuł :
Highly Versatile Cloud-Based Automation Solution for the Remote Design and Execution of Experiment Protocols during the COVID-19 Pandemic.
Autorzy :
Zucchelli P; Andrew Alliance SA, Vernier, GE, Switzerland.
Horak G; Andrew Alliance SA, Vernier, GE, Switzerland.
Skinner N; Andrew Alliance SA, Vernier, GE, Switzerland.
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Źródło :
SLAS technology [SLAS Technol] 2021 Apr; Vol. 26 (2), pp. 127-139. Date of Electronic Publication: 2020 Nov 19.
Typ publikacji :
Journal Article
MeSH Terms :
Automation, Laboratory*
COVID-19*/diagnosis
COVID-19*/prevention & control
COVID-19 Testing*
Cloud Computing*
Software*
COVID-19 Vaccines ; Humans ; Pandemics ; Research Design ; SARS-CoV-2
Czasopismo naukowe

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