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Tytuł:
A database for oncological research and quality assurance: implementation and first experiences with the University Clinical Cancer Registry Regensburg.
Autorzy:
Saibold A; Department of Information Technology, University Hospital Regensburg, Regensburg, Germany.; Bavarian Cancer Research Center (BZKF), Regensburg, Germany.
Koller M; Center for Clinical Studies, University Hospital Regensburg, Regensburg, Germany.
Mueller K; Center for Clinical Studies, University Hospital Regensburg, Regensburg, Germany.
Koelbl O; Department of Radiation Oncology, University Hospital Regensburg, Regensburg, Germany.
Vielsmeier V; Department of Otorhinolaryngology, Head and Neck Surgery, University Hospital Regensburg, Regensburg, Germany.
Pukrop T; Department of Internal Medicine 3, University Hospital Regensburg, Regensburg, Germany.
Spies O; Department of Information Technology, University Hospital Regensburg, Regensburg, Germany.
Eilers V; Department of Information Technology, University Hospital Regensburg, Regensburg, Germany.
Brese C; University Cancer Center Regensburg, University Hospital Regensburg, Franz-Josef-Strauss Allee 11, 93053, Regensburg, Germany.
Amann D; University Cancer Center Regensburg, University Hospital Regensburg, Franz-Josef-Strauss Allee 11, 93053, Regensburg, Germany.
Maurer J; Bavarian Cancer Research Center (BZKF), Regensburg, Germany. .; University Cancer Center Regensburg, University Hospital Regensburg, Franz-Josef-Strauss Allee 11, 93053, Regensburg, Germany. .
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Źródło:
BMC medical research methodology [BMC Med Res Methodol] 2024 Mar 27; Vol. 24 (1), pp. 76. Date of Electronic Publication: 2024 Mar 27.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Neoplasms*/diagnosis
Neoplasms*/therapy
Humans ; Registries
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
CREDO: a friendly Customizable, REproducible, DOcker file generator for bioinformatics applications.
Autorzy:
Alessandri S; Polytechnic of Turin, Turin, Italy.
Ratto ML; Department of Molecular Biotechnology and Health Sciences, University of Torino, Turin, Italy.
Rabellino S; Department of Computer Science, University of Torino, Turin, Italy.
Piacenti G; Department of Molecular Biotechnology and Health Sciences, University of Torino, Turin, Italy.
Contaldo SG; Department of Computer Science, University of Torino, Turin, Italy.
Pernice S; Department of Computer Science, University of Torino, Turin, Italy.
Beccuti M; Department of Computer Science, University of Torino, Turin, Italy.
Calogero RA; Department of Molecular Biotechnology and Health Sciences, University of Torino, Turin, Italy. .
Alessandri L; Department of Molecular Biotechnology and Health Sciences, University of Torino, Turin, Italy.; Department of Pathology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Mar 12; Vol. 25 (1), pp. 110. Date of Electronic Publication: 2024 Mar 12.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Computational Biology*/methods
Reproducibility of Results
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
PySmooth: a Python tool for the removal and correction of genotyping errors.
Autorzy:
Soibam B; Department of computer science and engineering technology, University of Houston- Downtown, Houston, TX, One Main St, 77002, USA. .
Roman G; Department of Biomolecular Sciences, School of Pharmacy, University of Mississippi, 415W Faser Hall, University, Oxford, Mississippi, MS, 38677-1848, USA.
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Źródło:
BMC research notes [BMC Res Notes] 2024 Apr 11; Vol. 17 (1), pp. 103. Date of Electronic Publication: 2024 Apr 11.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Polymorphism, Single Nucleotide*
Humans ; Genotype ; Chromosome Mapping
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
KCO: Balancing class distribution in just-in-time software defect prediction using kernel crossover oversampling.
Autorzy:
Ismail AM; Department of Software Engineering, Faculty of Computer Science and Information Technology, University of Malaya, Kuala Lumpur, Malaysia.; Faculty of Computer Science and Mathematics, Universiti Malaysia Terengganu, Kuala Terengganu, Terengganu, Malaysia.
Ab Hamid SH; Department of Software Engineering, Faculty of Computer Science and Information Technology, University of Malaya, Kuala Lumpur, Malaysia.
Abdul Sani A; Department of Software Engineering, Faculty of Computer Science and Information Technology, University of Malaya, Kuala Lumpur, Malaysia.
Mohd Daud NN; Department of Software Engineering, Faculty of Computer Science and Information Technology, University of Malaya, Kuala Lumpur, Malaysia.
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Źródło:
PloS one [PLoS One] 2024 Apr 11; Vol. 19 (4), pp. e0299585. Date of Electronic Publication: 2024 Apr 11 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Algorithms*
Software*
Cluster Analysis ; Forecasting
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
ChatGPT-Enhanced ROC Analysis (CERA): A shiny web tool for finding optimal cutoff points in biomarker analysis.
Autorzy:
Agraz M; Department of Statistics, Giresun University, Giresun, Turkiye.; Division of Applied Mathematics, Brown University, Providence, Rhode Island, United States of America.
Mantzoros C; Department of Medicine, Boston VA Healthcare System, and Department of Medicine, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States of America.
Karniadakis GE; Division of Applied Mathematics, Brown University, Providence, Rhode Island, United States of America.; School of Engineering, Brown University, Providence, Rhode Island, United States of America.
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Źródło:
PloS one [PLoS One] 2024 Apr 10; Vol. 19 (4), pp. e0289141. Date of Electronic Publication: 2024 Apr 10 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Programming Languages*
Humans ; ROC Curve ; Biomarkers
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
An easy to use tool for the analysis of subcellular mRNA transcript colocalisation in smFISH data.
Autorzy:
Bentley-Abbot C; Wellcome Centre for Integrative Parasitology (WCIP), University of Glasgow, Glasgow, UK. .; School of Biodiversity, One Health, Veterinary Medicine (SBOHVM), College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK. .; MRC-University of Glasgow Centre for Virus Research, University of Glasgow, Glasgow, UK. .
Heslop R; Wellcome Centre for Integrative Parasitology (WCIP), University of Glasgow, Glasgow, UK.; School of Biodiversity, One Health, Veterinary Medicine (SBOHVM), College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK.
Pirillo C; Beatson Institute for Cancer Research, Glasgow, UK.
Chandrasegaran P; Wellcome Centre for Integrative Parasitology (WCIP), University of Glasgow, Glasgow, UK.; School of Biodiversity, One Health, Veterinary Medicine (SBOHVM), College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK.
McConnell G; Department of Physics, University of Strathclyde, Glasgow, UK.
Roberts E; Beatson Institute for Cancer Research, Glasgow, UK.
Hutchinson E; MRC-University of Glasgow Centre for Virus Research, University of Glasgow, Glasgow, UK.
MacLeod A; Wellcome Centre for Integrative Parasitology (WCIP), University of Glasgow, Glasgow, UK.; School of Biodiversity, One Health, Veterinary Medicine (SBOHVM), College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK.
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Źródło:
Scientific reports [Sci Rep] 2024 Apr 09; Vol. 14 (1), pp. 8348. Date of Electronic Publication: 2024 Apr 09.
Typ publikacji:
Journal Article
MeSH Terms:
Image Processing, Computer-Assisted*
Software*
Animals ; Mice ; RNA, Messenger/metabolism ; In Situ Hybridization, Fluorescence/methods ; Up-Regulation
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
DPI_CDF: druggable protein identifier using cascade deep forest.
Autorzy:
Arif M; College of Science and Engineering, Hamad Bin Khalifa University, Doha, Qatar.
Fang G; State Key Laboratory for Organic Electronics and Information Displays, Institute of Advanced Materials (IAM), Nanjing 210023, P. R. China, Nanjing 210023, China.; Center for Research Innovation and Biomedical Informatics, Faculty of Medical Technology, Mahidol University, Bankok, 10700, Thailand.
Ghulam A; Information Technology Centre, Sindh Agriculture University, Sindh, Pakistan.
Musleh S; College of Science and Engineering, Hamad Bin Khalifa University, Doha, Qatar.
Alam T; College of Science and Engineering, Hamad Bin Khalifa University, Doha, Qatar. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Apr 05; Vol. 25 (1), pp. 145. Date of Electronic Publication: 2024 Apr 05.
Typ publikacji:
Journal Article
MeSH Terms:
Proteins*
Software*
Amino Acid Sequence ; Position-Specific Scoring Matrices ; Biological Evolution ; Computational Biology/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Insect detect: An open-source DIY camera trap for automated insect monitoring.
Autorzy:
Sittinger M; Julius Kühn Institute (JKI)-Federal Research Centre for Cultivated Plants, Institute for Biological Control, Dossenheim, Germany.
Uhler J; Julius Kühn Institute (JKI)-Federal Research Centre for Cultivated Plants, Institute for Biological Control, Dossenheim, Germany.
Pink M; Julius Kühn Institute (JKI)-Federal Research Centre for Cultivated Plants, Institute for Biological Control, Dossenheim, Germany.
Herz A; Julius Kühn Institute (JKI)-Federal Research Centre for Cultivated Plants, Institute for Biological Control, Dossenheim, Germany.
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Źródło:
PloS one [PLoS One] 2024 Apr 03; Vol. 19 (4), pp. e0295474. Date of Electronic Publication: 2024 Apr 03 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Insecta*
Software*
Animals ; Biodiversity ; Data Collection ; Metadata
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
CITEViz: interactively classify cell populations in CITE-Seq via a flow cytometry-like gating workflow using R-Shiny.
Autorzy:
Kong GL; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health and Science University, 3181 SW Sam Jackson Pk. Rd., KR-HEM, Portland, OR, 97239, USA.
Nguyen TT; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health and Science University, 3181 SW Sam Jackson Pk. Rd., KR-HEM, Portland, OR, 97239, USA.
Rosales WK; Earle A. Chiles Research Institute, Providence, Portland, OR, 97213, USA.
Panikar AD; Knight Campus Graduate Internship Program - Bioinformatics, University of Oregon, Eugene, OR, 97403, USA.
Cheney JHW; Knight Campus Graduate Internship Program - Bioinformatics, University of Oregon, Eugene, OR, 97403, USA.
Lusardi TA; Cancer Early Detection Advanced Research, Oregon Health and Science University, Portland, OR, 97238, USA.
Yashar WM; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health and Science University, 3181 SW Sam Jackson Pk. Rd., KR-HEM, Portland, OR, 97239, USA.; Department of Biomedical Engineering, Oregon Health and Science University, Portland, USA.
Curtiss BM; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health and Science University, 3181 SW Sam Jackson Pk. Rd., KR-HEM, Portland, OR, 97239, USA.
Carratt SA; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health and Science University, 3181 SW Sam Jackson Pk. Rd., KR-HEM, Portland, OR, 97239, USA.
Braun TP; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health and Science University, 3181 SW Sam Jackson Pk. Rd., KR-HEM, Portland, OR, 97239, USA. .; Division of Hematology and Medical Oncology, Oregon Health and Science University, Portland, USA. .
Maxson JE; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health and Science University, 3181 SW Sam Jackson Pk. Rd., KR-HEM, Portland, OR, 97239, USA. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Apr 02; Vol. 25 (1), pp. 142. Date of Electronic Publication: 2024 Apr 02.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Leukocytes, Mononuclear*
Humans ; Sequence Analysis, RNA/methods ; Workflow ; Flow Cytometry ; Membrane Proteins ; Single-Cell Analysis/methods ; Gene Expression Profiling/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
shinyMBA: a novel R shiny application for quality control of the multiplex bead assay for serosurveillance studies.
Autorzy:
Matson Z; Viral Vaccine Preventable Diseases Branch, Division of Viral Diseases, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA. .
Cooley G; Division of Parasitic Diseases and Malaria, Center for Global Health, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Parameswaran N; Division of Parasitic Diseases and Malaria, Center for Global Health, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Simon A; Division of Parasitic Diseases and Malaria, Center for Global Health, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Bankamp B; Viral Vaccine Preventable Diseases Branch, Division of Viral Diseases, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Coughlin MM; Laboratory Branch, Coronavirus and Other Respiratory Viruses Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
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Źródło:
Scientific reports [Sci Rep] 2024 Mar 28; Vol. 14 (1), pp. 7442. Date of Electronic Publication: 2024 Mar 28.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Seroepidemiologic Studies ; Quality Control ; Reference Standards ; Workflow
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Comparative study on differential expression analysis methods for single-cell RNA sequencing data with small biological replicates: Based on single-cell transcriptional data of PBMCs from COVID-19 severe patients.
Autorzy:
Xue J; Department of Statistics, School of Economics, Hangzhou Dianzi University, Hangzhou, China.
Zhou X; Department of Statistics, School of Economics, Hangzhou Dianzi University, Hangzhou, China.
Yang J; Department of Statistics, School of Economics, Hangzhou Dianzi University, Hangzhou, China.
Niu A; Department of Statistics, School of Economics, Hangzhou Dianzi University, Hangzhou, China.
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Źródło:
PloS one [PLoS One] 2024 Mar 27; Vol. 19 (3), pp. e0299358. Date of Electronic Publication: 2024 Mar 27 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Software*
COVID-19*/genetics
Humans ; Gene Expression Profiling/methods ; Sequence Analysis, RNA/methods ; Algorithms ; Single-Cell Analysis/methods ; Cluster Analysis
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
An open-source FACS automation system for high-throughput cell biology.
Autorzy:
Wiener DM; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
Huynh E; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
Jeyakumar I; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
Bax S; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
Sama S; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
Cabrera JP; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
Todorova V; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
Vangipuram M; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
Vaid S; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
Otsuka F; Medical Business Group, Sony Corporation, San Jose, California, United States of America.
Sakai Y; Medical Business Group, Sony Corporation, San Jose, California, United States of America.
Leonetti MD; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
Gómez-Sjöberg R; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
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Źródło:
PloS one [PLoS One] 2024 Mar 21; Vol. 19 (3), pp. e0299402. Date of Electronic Publication: 2024 Mar 21 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Automation ; Flow Cytometry/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
OralExplorer: a web server for exploring the mechanisms of oral inflammatory diseases.
Autorzy:
Lin W; Stomatological Hospital, School of Stomatology, Southern Medical University, Guangzhou, China.
Yang H; The Department of Oncology, Zhujiang Hospital, Southern Medical University, Guangzhou, China.
Lin J; Stomatological Hospital, School of Stomatology, Southern Medical University, Guangzhou, China.
Yang X; Stomatological Hospital, School of Stomatology, Southern Medical University, Guangzhou, China.
Liao Z; Stomatological Hospital, School of Stomatology, Southern Medical University, Guangzhou, China.
Zheng Y; Stomatological Hospital, School of Stomatology, Southern Medical University, Guangzhou, China.
Luo P; The Department of Oncology, Zhujiang Hospital, Southern Medical University, Guangzhou, China. .
Liu C; Stomatological Hospital, School of Stomatology, Southern Medical University, Guangzhou, China. .
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Źródło:
Journal of translational medicine [J Transl Med] 2024 Mar 15; Vol. 22 (1), pp. 282. Date of Electronic Publication: 2024 Mar 15.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Computational Biology*/methods
Humans ; Gene Expression Profiling/methods ; Transcriptome/genetics ; Databases, Factual ; Rho Guanine Nucleotide Exchange Factors
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
GO2Sum: generating human-readable functional summary of proteins from GO terms.
Autorzy:
Giri SJ; Department of Computer Science, Purdue University, West Lafayette, IN, USA.
Ibtehaz N; Department of Computer Science, Purdue University, West Lafayette, IN, USA.
Kihara D; Department of Computer Science, Purdue University, West Lafayette, IN, USA. .; Department of Biological Sciences, Purdue University, West Lafayette, IN, USA. .
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Źródło:
NPJ systems biology and applications [NPJ Syst Biol Appl] 2024 Mar 15; Vol. 10 (1), pp. 29. Date of Electronic Publication: 2024 Mar 15.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Proteins*/genetics
Humans ; Gene Ontology
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
NeuronBridge: an intuitive web application for neuronal morphology search across large data sets.
Autorzy:
Clements J; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA.
Goina C; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA.
Hubbard PM; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA.
Kawase T; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA.
Olbris DJ; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA.
Otsuna H; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA.
Svirskas R; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA.
Rokicki K; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, USA. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Mar 15; Vol. 25 (1), pp. 114. Date of Electronic Publication: 2024 Mar 15.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Connectome*
Animals ; Neurons ; Microscopy, Electron ; Drosophila
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
For long-term sustainable software in bioinformatics.
Autorzy:
Coelho LP; Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology, Translational Research Institute, Woolloongabba, Queensland, Australia.; Centre for Data Science, Queensland University of Technology, Brisbane, Australia.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2024 Mar 15; Vol. 20 (3), pp. e1011920. Date of Electronic Publication: 2024 Mar 15 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Computational Biology*
Software*
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Bayesian inference of relative fitness on high-throughput pooled competition assays.
Autorzy:
Razo-Mejia M; Department of Biology, Stanford University, Stanford, California, United States of America.
Mani M; NSF-Simons Center for Quantitative Biology, Northwestern University, Chicago, Illinois, United States of America.; Department of Engineering Sciences and Applied Mathematics, Northwestern University, Chicago, Illinois, United States of America.
Petrov D; Department of Biology, Stanford University, Stanford, California, United States of America.; Stanford Cancer Institute, Stanford University School of Medicine, Stanford, California, United States of America.; Chan Zuckerberg Biohub, San Francisco, California, United States of America.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2024 Mar 15; Vol. 20 (3), pp. e1011937. Date of Electronic Publication: 2024 Mar 15 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Software*
High-Throughput Screening Assays*
Bayes Theorem ; Sequence Analysis, DNA ; Gene Library
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Machine learning on alignment features for parent-of-origin classification of simulated hybrid RNA-seq.
Autorzy:
Miller JR; Department of Computer Science, Mathematics, Engineering, Shepherd University, Shepherdstown, WV, USA. .; EVOGENE, Department of Biosciences, University of Oslo, Oslo, Norway. .; Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV, USA. .
Adjeroh DA; Lane Department of Computer Science and Electrical Engineering, West Virginia University, Morgantown, WV, USA.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Mar 12; Vol. 25 (1), pp. 109. Date of Electronic Publication: 2024 Mar 12.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Transcriptome*
RNA-Seq ; Sequence Analysis, RNA/methods ; Machine Learning
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Automated code development based on genetic programming in graphical programming language: A pilot study.
Autorzy:
Kodytek P; Department of Cybernetics and Biomedical Engineering, VSB-Technical University of Ostrava, Ostrava, Czech Republic.
Bodzas A; Department of Cybernetics and Biomedical Engineering, VSB-Technical University of Ostrava, Ostrava, Czech Republic.
Zidek J; Department of Cybernetics and Biomedical Engineering, VSB-Technical University of Ostrava, Ostrava, Czech Republic.
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Źródło:
PloS one [PLoS One] 2024 Mar 07; Vol. 19 (3), pp. e0299456. Date of Electronic Publication: 2024 Mar 07 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Programming Languages*
Software*
Pilot Projects ; Algorithms ; Automation
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
ProbBreed: a novel tool for calculating the risk of cultivar recommendation in multienvironment trials.
Autorzy:
Chaves SFS; Department of Agronomy, Federal University of Viçosa, Viçosa 36570-900, Brazil.
Krause MD; Department of Agronomy, Iowa State University, Ames, IA 50011, USA.
Dias LAS; Department of Agronomy, Federal University of Viçosa, Viçosa 36570-900, Brazil.
Garcia AAF; Department of Genetics, Luiz de Queiroz College of Agriculture, University of São Paulo, Piracicaba, 13418-900, Brazil.
Dias KOG; Department of General Biology, Federal University of Viçosa, Viçosa 36570-000, Brazil.
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Źródło:
G3 (Bethesda, Md.) [G3 (Bethesda)] 2024 Mar 06; Vol. 14 (3).
Typ publikacji:
Journal Article
MeSH Terms:
Models, Genetic*
Software*
Bayes Theorem ; Genotype
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
REDCapDM: An R package with a set of data management tools for a REDCap project.
Autorzy:
Carmezim J; Biostatistics Support and Research Unit, Germans Trias i Pujol Research Institute and Hospital (IGTP), Carretera de Can Ruti, Camí de Les Escoles S/N, 08916, Badalona, Spain.
Satorra P; Biostatistics Support and Research Unit, Germans Trias i Pujol Research Institute and Hospital (IGTP), Carretera de Can Ruti, Camí de Les Escoles S/N, 08916, Badalona, Spain.
Peñafiel J; Biostatistics Unit, Institut d'Investigació Biomèdica de Bellvitge, Hospitalet de Llobregat, Spain.; Department of Basic Clinical Practice, School of Medicine and Health Sciences, University of Barcelona, Barcelona, Spain.
García-Lerma E; Biostatistics Unit, Institut d'Investigació Biomèdica de Bellvitge, Hospitalet de Llobregat, Spain.
Pallarès N; Biostatistics Support and Research Unit, Germans Trias i Pujol Research Institute and Hospital (IGTP), Carretera de Can Ruti, Camí de Les Escoles S/N, 08916, Badalona, Spain.; Department of Basic Clinical Practice, School of Medicine and Health Sciences, University of Barcelona, Barcelona, Spain.
Santos N; Biostatistics Unit, Institut d'Investigació Biomèdica de Bellvitge, Hospitalet de Llobregat, Spain.
Tebé C; Biostatistics Support and Research Unit, Germans Trias i Pujol Research Institute and Hospital (IGTP), Carretera de Can Ruti, Camí de Les Escoles S/N, 08916, Badalona, Spain. .
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Źródło:
BMC medical research methodology [BMC Med Res Methodol] 2024 Mar 01; Vol. 24 (1), pp. 55. Date of Electronic Publication: 2024 Mar 01.
Typ publikacji:
Journal Article
MeSH Terms:
Data Management*
Software*
Humans ; Reproducibility of Results ; Surveys and Questionnaires ; Records
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Comparison of typical radiation doses and risks using an anthropomorphic 'bone fracture' phantom for commonly performed X-ray projections in a 5-year-old.
Autorzy:
Doyle E; Department of Forensic Medicine, Monash University, Melbourne, Victoria, Australia.
Dimmock MR; Department of Medical Imaging and Radiation Sciences, Monash University, Melbourne, Victoria, Australia.; School of Allied Health Professions, Keele University, Keele, UK.
Lee KL; Australian Radiation Protection and Nuclear Safety Agency, Yallambie, Victoria, Australia.
Thomas P; Australian Radiation Protection and Nuclear Safety Agency, Yallambie, Victoria, Australia.
Bassed RB; Department of Forensic Medicine, Monash University, Melbourne, Victoria, Australia.; Victorian Institute of Forensic Medicine, Academic Programs, Melbourne, Victoria, Australia.
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Źródło:
Journal of medical radiation sciences [J Med Radiat Sci] 2024 Mar; Vol. 71 (1), pp. 35-43. Date of Electronic Publication: 2023 Aug 21.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Humans ; Child ; Child, Preschool ; X-Rays ; Radiation Dosage ; Radiography ; Phantoms, Imaging
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Underwater object detection method based on learnable query recall mechanism and lightweight adapter.
Autorzy:
Lin X; Institute of Logistics Science and Engineering, Shanghai Maritime University, Shanghai, People's Republic of China.
Huang X; Institute of Logistics Science and Engineering, Shanghai Maritime University, Shanghai, People's Republic of China.
Wang L; Institute of Logistics Science and Engineering, Shanghai Maritime University, Shanghai, People's Republic of China.
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Źródło:
PloS one [PLoS One] 2024 Feb 28; Vol. 19 (2), pp. e0298739. Date of Electronic Publication: 2024 Feb 28 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Algorithms*
Aquaculture ; Environmental Monitoring ; Mental Recall ; Oligonucleotides
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
An assessment of AcquireX and Compound Discoverer software 3.3 for non-targeted metabolomics.
Autorzy:
Cooper B; Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD, 20705, USA. .
Yang R; Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD, 20705, USA.
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Źródło:
Scientific reports [Sci Rep] 2024 Feb 28; Vol. 14 (1), pp. 4841. Date of Electronic Publication: 2024 Feb 28.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Metabolomics*/methods
Mass Spectrometry/methods ; Reference Standards
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Multi-channel magnetic resonance spectroscopy graphical user interface (McMRSGUI).
Autorzy:
Carrell T; Department of Biomedical Engineering, Texas A&M University, College Station, Texas, United States of America.
McDougall MP; Department of Biomedical Engineering, Texas A&M University, College Station, Texas, United States of America.
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Źródło:
PloS one [PLoS One] 2024 Feb 28; Vol. 19 (2), pp. e0299142. Date of Electronic Publication: 2024 Feb 28 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Algorithms*
Reproducibility of Results ; Magnetic Resonance Spectroscopy/methods ; Computer Simulation ; Signal-To-Noise Ratio ; User-Computer Interface
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
CytoPipeline and CytoPipelineGUI: a Bioconductor R package suite for building and visualizing automated pre-processing pipelines for flow cytometry data.
Autorzy:
Hauchamps P; Computational Biology and Bioinformatics, de duve Institute, UCLouvain, Brussels, Belgium.
Bayat B; GSK, Rixensart, Belgium.
Delandre S; GSK, Rixensart, Belgium.
Hamrouni M; GSK, Rixensart, Belgium.
Toussaint M; GSK, Rixensart, Belgium.
Temmerman S; GSK, Rixensart, Belgium.
Lin D; GSK, Rixensart, Belgium.
Gatto L; Computational Biology and Bioinformatics, de duve Institute, UCLouvain, Brussels, Belgium. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Feb 20; Vol. 25 (1), pp. 80. Date of Electronic Publication: 2024 Feb 20.
Typ publikacji:
Journal Article
MeSH Terms:
Data Analysis*
Software*
Flow Cytometry/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Transomics2cytoscape: an automated software for interpretable 2.5-dimensional visualization of trans-omic networks.
Autorzy:
Nishida K; Laboratory for Integrated Cellular Systems, RIKEN Center for Integrative Medical Sciences, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.; Department of Biotechnology and Life Science, Tokyo University of Agriculture and Technology, 2-24-16 Nakamachi, Koganei-shi, Tokyo, 184-8588, Japan.
Maruyama J; Laboratory for Integrated Cellular Systems, RIKEN Center for Integrative Medical Sciences, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.
Kaizu K; Center for Biosystems Dynamics Research (BDR), RIKEN, 6-2-3 Furuedai, Suita, Osaka, 565-0874, Japan.
Takahashi K; Center for Biosystems Dynamics Research (BDR), RIKEN, 6-2-3 Furuedai, Suita, Osaka, 565-0874, Japan.; Institute for Advanced Biosciences, Keio University, Fujisawa, 252-8520, Japan.
Yugi K; Laboratory for Integrated Cellular Systems, RIKEN Center for Integrative Medical Sciences, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan. .; Institute for Advanced Biosciences, Keio University, Fujisawa, 252-8520, Japan. .; Department of Biological Sciences, Graduate School of Science, The University of Tokyo, 7-3-1 Hongo, Bunkyo-ku, Tokyo, 113-0033, Japan. .
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Źródło:
NPJ systems biology and applications [NPJ Syst Biol Appl] 2024 Feb 19; Vol. 10 (1), pp. 16. Date of Electronic Publication: 2024 Feb 19.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Multiomics*
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Software Tools for 2D Cell Segmentation.
Autorzy:
Liu P; College of Computer Science and Technology (College of Data Science), Taiyuan University of Technology, Jinzhong 030600, China.
Li J; College of Computer Science and Technology (College of Data Science), Taiyuan University of Technology, Jinzhong 030600, China.; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, No 7, Pengfei Road, Dapeng District, Shenzhen 518120, China.
Chang J; College of Computer Science and Technology (College of Data Science), Taiyuan University of Technology, Jinzhong 030600, China.; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, No 7, Pengfei Road, Dapeng District, Shenzhen 518120, China.
Hu P; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, No 7, Pengfei Road, Dapeng District, Shenzhen 518120, China.
Sun Y; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, No 7, Pengfei Road, Dapeng District, Shenzhen 518120, China.
Jiang Y; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, No 7, Pengfei Road, Dapeng District, Shenzhen 518120, China.
Zhang F; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, No 7, Pengfei Road, Dapeng District, Shenzhen 518120, China.
Shao H; Shenzhen Branch, Guangdong Laboratory of Lingnan Modern Agriculture, Genome Analysis Laboratory of the Ministry of Agriculture and Rural Affairs, Agricultural Genomics Institute at Shenzhen, Chinese Academy of Agricultural Sciences, No 7, Pengfei Road, Dapeng District, Shenzhen 518120, China.
Pokaż więcej
Źródło:
Cells [Cells] 2024 Feb 17; Vol. 13 (4). Date of Electronic Publication: 2024 Feb 17.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Software*
Image Processing, Computer-Assisted*/methods
Machine Learning
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Fasta2Structure: a user-friendly tool for converting multiple aligned FASTA files to STRUCTURE format.
Autorzy:
Bessa-Silva A; Laboratório de Evolução, Universidade Federal do Pará, Alameda Leandro Ribeiro, Aldeia, Bragança, Pará, Brazil. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Feb 15; Vol. 25 (1), pp. 73. Date of Electronic Publication: 2024 Feb 15.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
User-Computer Interface*
Sequence Alignment
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Dashing Growth Curves: a web application for rapid and interactive analysis of microbial growth curves.
Autorzy:
Reiter MA; Department of Biology, Institute of Microbiology, ETH Zurich, 8093, Zurich, Switzerland. .
Vorholt JA; Department of Biology, Institute of Microbiology, ETH Zurich, 8093, Zurich, Switzerland.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Feb 12; Vol. 25 (1), pp. 67. Date of Electronic Publication: 2024 Feb 12.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Data Interpretation, Statistical
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Sensor extended imaging workflow for creating fit for purpose models in basic and applied cell biology.
Autorzy:
Schueler J; Charles River Germany GmbH, Am Flughafen 12-14, 79111, Freiburg, Germany. .
Sjöman H; Vitroscope AS, Leirfossvegen 5d, 7037, Trondheim, Norway.
Kriesi C; Vitroscope AS, Leirfossvegen 5d, 7037, Trondheim, Norway.
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Źródło:
Communications biology [Commun Biol] 2024 Feb 10; Vol. 7 (1), pp. 170. Date of Electronic Publication: 2024 Feb 10.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Software*
Diagnostic Imaging*
Humans ; Workflow
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Robust expansion of phylogeny for fast-growing genome sequence data.
Autorzy:
Ye Y; State Key Laboratory of Emerging Infectious Diseases, School of Public Health, The University of Hong Kong, Hong Kong SAR, P. R. China.; Laboratory of Data Discovery for Health Limited, 19W Hong Kong Science & Technology Parks, Hong Kong SAR, P. R. China.
Shum MH; State Key Laboratory of Emerging Infectious Diseases, School of Public Health, The University of Hong Kong, Hong Kong SAR, P. R. China.; Laboratory of Data Discovery for Health Limited, 19W Hong Kong Science & Technology Parks, Hong Kong SAR, P. R. China.
Tsui JL; State Key Laboratory of Emerging Infectious Diseases, School of Public Health, The University of Hong Kong, Hong Kong SAR, P. R. China.; Laboratory of Data Discovery for Health Limited, 19W Hong Kong Science & Technology Parks, Hong Kong SAR, P. R. China.
Yu G; Department of Bioinformatics, School of Basic Medical Sciences, Southern Medical University, Guangzhou, Guangdong, China.
Smith DK; State Key Laboratory of Emerging Infectious Diseases, School of Public Health, The University of Hong Kong, Hong Kong SAR, P. R. China.
Zhu H; State Key Laboratory of Emerging Infectious Diseases, School of Public Health, The University of Hong Kong, Hong Kong SAR, P. R. China.; Laboratory of Data Discovery for Health Limited, 19W Hong Kong Science & Technology Parks, Hong Kong SAR, P. R. China.; Guangdong-Hongkong Joint Laboratory of Emerging Infectious Diseases, Joint Institute of Virology (Shantou University/The University of Hong Kong), Shantou, Guangdong, P. R. China.; EKIH (Gewuzhikang) Pathogen Research Institute, Futian District, Shenzhen City, Guangdong, P. R. China.
Wu JT; State Key Laboratory of Emerging Infectious Diseases, School of Public Health, The University of Hong Kong, Hong Kong SAR, P. R. China.; Laboratory of Data Discovery for Health Limited, 19W Hong Kong Science & Technology Parks, Hong Kong SAR, P. R. China.
Guan Y; State Key Laboratory of Emerging Infectious Diseases, School of Public Health, The University of Hong Kong, Hong Kong SAR, P. R. China.; Laboratory of Data Discovery for Health Limited, 19W Hong Kong Science & Technology Parks, Hong Kong SAR, P. R. China.; Guangdong-Hongkong Joint Laboratory of Emerging Infectious Diseases, Joint Institute of Virology (Shantou University/The University of Hong Kong), Shantou, Guangdong, P. R. China.; EKIH (Gewuzhikang) Pathogen Research Institute, Futian District, Shenzhen City, Guangdong, P. R. China.
Lam TT; State Key Laboratory of Emerging Infectious Diseases, School of Public Health, The University of Hong Kong, Hong Kong SAR, P. R. China.; Laboratory of Data Discovery for Health Limited, 19W Hong Kong Science & Technology Parks, Hong Kong SAR, P. R. China.; Guangdong-Hongkong Joint Laboratory of Emerging Infectious Diseases, Joint Institute of Virology (Shantou University/The University of Hong Kong), Shantou, Guangdong, P. R. China.; EKIH (Gewuzhikang) Pathogen Research Institute, Futian District, Shenzhen City, Guangdong, P. R. China.; Centre for Immunology & Infection Limited, 17W Hong Kong Science & Technology Parks, Hong Kong SAR, P. R. China.
Pokaż więcej
Źródło:
PLoS computational biology [PLoS Comput Biol] 2024 Feb 08; Vol. 20 (2), pp. e1011871. Date of Electronic Publication: 2024 Feb 08 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Genome*
Software*
Phylogeny ; Likelihood Functions ; SARS-CoV-2/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
VSpipe-GUI, an Interactive Graphical User Interface for Virtual Screening and Hit Selection.
Autorzy:
Hussain R; School of Biological Sciences, Faculty of Biology Medicine and Health, University of Manchester, Manchester Academic Health Science Centre, Manchester M13 9PT, UK.
Hackett AS; School of Biological Sciences, Faculty of Biology Medicine and Health, University of Manchester, Manchester Academic Health Science Centre, Manchester M13 9PT, UK.
Álvarez-Carretero S; Bristol Palaeobiology Group, School of Earth Sciences, University of Bristol, Life Sciences Building, Tyndall Avenue, Bristol BS8 1TH, UK.
Tabernero L; School of Biological Sciences, Faculty of Biology Medicine and Health, University of Manchester, Manchester Academic Health Science Centre, Manchester M13 9PT, UK.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2024 Feb 07; Vol. 25 (4). Date of Electronic Publication: 2024 Feb 07.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Hepatitis C*
Humans ; Proteins/chemistry ; Binding Sites ; Hepacivirus ; Ligands ; User-Computer Interface ; Molecular Docking Simulation
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
CyVerse: Cyberinfrastructure for open science.
Autorzy:
Swetnam TL; The University of Arizona, Tucson, Arizona, United States of America.
Antin PB; The University of Arizona, Tucson, Arizona, United States of America.
Bartelme R; The University of Arizona, Tucson, Arizona, United States of America.; Pivot Bio, Berkeley, California, United States of America.
Bucksch A; The University of Arizona, Tucson, Arizona, United States of America.
Camhy D; Graz University of Technology, Graz, Austria.
Chism G; The University of Arizona, Tucson, Arizona, United States of America.
Choi I; The University of Arizona, Tucson, Arizona, United States of America.
Cooksey AM; The University of Arizona, Tucson, Arizona, United States of America.
Cosi M; The University of Arizona, Tucson, Arizona, United States of America.
Cowen C; The University of Arizona, Tucson, Arizona, United States of America.
Culshaw-Maurer M; The University of Arizona, Tucson, Arizona, United States of America.; The Carpentries, Oakland, California, United States of America.
Davey R; The Carpentries, Oakland, California, United States of America.; Earlham Institute, Norwich, United Kingdom.
Davey S; The University of Arizona, Tucson, Arizona, United States of America.
Devisetty U; The University of Arizona, Tucson, Arizona, United States of America.; Greenlight Biosciences, Durham North Carolina, United States of America.
Edgin T; The University of Arizona, Tucson, Arizona, United States of America.
Edmonds A; The University of Arizona, Tucson, Arizona, United States of America.
Fedorov D; ViQI Inc. Santa Barbara, California, United States of America.
Frady J; The University of Arizona, Tucson, Arizona, United States of America.
Fonner J; Texas Advanced Computing Center, Austin Texas, United States of America.
Gillan JK; The University of Arizona, Tucson, Arizona, United States of America.
Hossain I; The University of Arizona, Tucson, Arizona, United States of America.
Joyce B; The University of Arizona, Tucson, Arizona, United States of America.
Lang K; Know Center GmbH, Graz, Austria.
Lee T; The University of Arizona, Tucson, Arizona, United States of America.
Littin S; The University of Arizona, Tucson, Arizona, United States of America.
McEwen I; The University of Arizona, Tucson, Arizona, United States of America.
Merchant N; The University of Arizona, Tucson, Arizona, United States of America.
Micklos D; DNA Learning Center, Cold Spring Harbor Laboratory, Long Island New York, United States of America.
Nelson A; Boyce Thompson Institute, Ithaca, New York, United States of America.
Ramsey A; The University of Arizona, Tucson, Arizona, United States of America.
Roberts S; The University of Arizona, Tucson, Arizona, United States of America.
Sarando P; The University of Arizona, Tucson, Arizona, United States of America.
Skidmore E; The University of Arizona, Tucson, Arizona, United States of America.
Song J; Texas Advanced Computing Center, Austin Texas, United States of America.
Sprinkle MM; The University of Arizona, Tucson, Arizona, United States of America.
Srinivasan S; The University of Arizona, Tucson, Arizona, United States of America.
Stanzione D; Texas Advanced Computing Center, Austin Texas, United States of America.
Strootman JD; The University of Arizona, Tucson, Arizona, United States of America.
Stryeck S; Graz University of Technology, Graz, Austria.; Know Center GmbH, Graz, Austria.
Tuteja R; The University of Arizona, Tucson, Arizona, United States of America.; Greenlight Biosciences, Durham North Carolina, United States of America.
Vaughn M; Texas Advanced Computing Center, Austin Texas, United States of America.
Wali M; Graz University of Technology, Graz, Austria.
Wall M; The University of Arizona, Tucson, Arizona, United States of America.
Walls R; The University of Arizona, Tucson, Arizona, United States of America.; Critical Path Institute, Tucson, Arizona, United States of America.
Wang L; DNA Learning Center, Cold Spring Harbor Laboratory, Long Island New York, United States of America.
Wickizer T; The University of Arizona, Tucson, Arizona, United States of America.
Williams J; DNA Learning Center, Cold Spring Harbor Laboratory, Long Island New York, United States of America.
Wregglesworth J; The University of Arizona, Tucson, Arizona, United States of America.
Lyons E; The University of Arizona, Tucson, Arizona, United States of America.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2024 Feb 07; Vol. 20 (2), pp. e1011270. Date of Electronic Publication: 2024 Feb 07 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Artificial Intelligence*
Software*
Humans ; Cloud Computing ; Publishing
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
A new bio imagery user-friendly tool for automatic morphometry measurement on muscle cell cultures and histological sections.
Autorzy:
Brun A; UMR1019 Unité de Nutrition Humaine (UNH), INRAE, Université Clermont Auvergne, Clermont-Ferrand, France.
Mougeot G; iGReD CNRS, INSERM Université Clermont Auvergne, Clermont-Ferrand, France.
Denis P; UMR1019 Unité de Nutrition Humaine (UNH), INRAE, Université Clermont Auvergne, Clermont-Ferrand, France.
Collin ML; UMR1019 Unité de Nutrition Humaine (UNH), INRAE, Université Clermont Auvergne, Clermont-Ferrand, France.
Pouchin P; iGReD CNRS, INSERM Université Clermont Auvergne, Clermont-Ferrand, France.
Montaurier C; UMR1019 Unité de Nutrition Humaine (UNH), INRAE, Université Clermont Auvergne, Clermont-Ferrand, France.
Walrand S; UMR1019 Unité de Nutrition Humaine (UNH), INRAE, Université Clermont Auvergne, Clermont-Ferrand, France.
Capel F; UMR1019 Unité de Nutrition Humaine (UNH), INRAE, Université Clermont Auvergne, Clermont-Ferrand, France. .
Gueugneau M; UMR1019 Unité de Nutrition Humaine (UNH), INRAE, Université Clermont Auvergne, Clermont-Ferrand, France.
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Źródło:
Scientific reports [Sci Rep] 2024 Feb 07; Vol. 14 (1), pp. 3108. Date of Electronic Publication: 2024 Feb 07.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Muscle Fibers, Skeletal*/physiology
Humans ; Reproducibility of Results ; Image Processing, Computer-Assisted/methods ; Cell Culture Techniques
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Refined preferences of prioritizers improve intelligent diagnosis for Mendelian diseases.
Autorzy:
Yuan X; Changsha Kingmed Center for Clinical Laboratory, Lutian Road 28, Changsha, 410000, Hunan, China.
Su J; Changsha Kingmed Center for Clinical Laboratory, Lutian Road 28, Changsha, 410000, Hunan, China.
Wang J; Changsha Kingmed Center for Clinical Laboratory, Lutian Road 28, Changsha, 410000, Hunan, China.
Dai B; Changsha Kingmed Center for Clinical Laboratory, Lutian Road 28, Changsha, 410000, Hunan, China.
Sun Y; Changsha Kingmed Center for Clinical Laboratory, Lutian Road 28, Changsha, 410000, Hunan, China.
Zhang K; Changsha Kingmed Center for Clinical Laboratory, Lutian Road 28, Changsha, 410000, Hunan, China.
Li Y; Guangzhou Kingmed Center for Clinical Laboratory, Guangzhou, Guangdong, China.
Chuan J; Genetalks Biotech. Co., Ltd., Changsha, Hunan, China.
Tang C; Changsha Kingmed Center for Clinical Laboratory, Lutian Road 28, Changsha, 410000, Hunan, China.
Yu Y; Changsha Kingmed Center for Clinical Laboratory, Lutian Road 28, Changsha, 410000, Hunan, China. .
Gong Q; Changsha Kingmed Center for Clinical Laboratory, Lutian Road 28, Changsha, 410000, Hunan, China. .
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Źródło:
Scientific reports [Sci Rep] 2024 Feb 03; Vol. 14 (1), pp. 2845. Date of Electronic Publication: 2024 Feb 03.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Humans ; Phenotype
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Foldy: An open-source web application for interactive protein structure analysis.
Autorzy:
Roberts JB; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California, United States of America.; Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.; Department of Bioengineering, University of California, Berkeley, Berkeley, California, United States of America.
Nava AA; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California, United States of America.; Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.; Department of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California, United States of America.
Pearson AN; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California, United States of America.; Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.; Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, United States of America.
Incha MR; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California, United States of America.; Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.; Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, United States of America.
Valencia LE; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California, United States of America.; Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.; Department of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California, United States of America.
Ma M; Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California, United States of America.
Rao A; Department of Bioengineering, University of California, Berkeley, Berkeley, California, United States of America.
Keasling JD; Joint BioEnergy Institute, Lawrence Berkeley National Laboratory, Emeryville, California, United States of America.; Biological Systems and Engineering, Lawrence Berkeley National Laboratory, Berkeley, California, United States of America.; Department of Bioengineering, University of California, Berkeley, Berkeley, California, United States of America.; Department of Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California, United States of America.; Center for Synthetic Biochemistry, Shenzhen Institutes for Advanced Technologies, Shenzhen, People's Republic of China.; The Novo Nordisk Foundation Center for Biosustainability, Technical University Denmark, Kemitorvet, Denmark.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2024 Feb 02; Vol. 20 (2), pp. e1011171. Date of Electronic Publication: 2024 Feb 02 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Proteins*
Humans ; Amino Acids
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Say farewell to bland regression reporting: Three forest plot variations for visualizing linear models.
Autorzy:
Fries J; Department of Developmental and Educational Psychology, Faculty of Psychology, University of Vienna, Vienna, Austria.
Oberleiter S; Department of Developmental and Educational Psychology, Faculty of Psychology, University of Vienna, Vienna, Austria.
Pietschnig J; Department of Developmental and Educational Psychology, Faculty of Psychology, University of Vienna, Vienna, Austria.
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Źródło:
PloS one [PLoS One] 2024 Feb 02; Vol. 19 (2), pp. e0297033. Date of Electronic Publication: 2024 Feb 02 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Linear Models
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Colocalization by cross-correlation, a new method of colocalization suited for super-resolution microscopy.
Autorzy:
McCall AD; Optical Imaging and Analysis Facility, School of Dental Medicine, University at Buffalo, Buffalo, NY, USA. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Feb 02; Vol. 25 (1), pp. 55. Date of Electronic Publication: 2024 Feb 02.
Typ publikacji:
Journal Article
MeSH Terms:
Microscopy*
Software*
Algorithms ; Image Processing, Computer-Assisted/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
A systematic literature review on the applications of recurrent neural networks in code clone research.
Autorzy:
Quradaa FH; Department of Computer Science, University of Peshawar, Peshawar, Pakistan.; Department of Computer Science, Aden Community College, Aden, Yemen.
Shahzad S; Department of Computer Science, University of Peshawar, Peshawar, Pakistan.
Almoqbily RS; Department of Computer Science, University of Peshawar, Peshawar, Pakistan.; Department of Computer Science, Aden Community College, Aden, Yemen.
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Źródło:
PloS one [PLoS One] 2024 Feb 02; Vol. 19 (2), pp. e0296858. Date of Electronic Publication: 2024 Feb 02 (Print Publication: 2024).
Typ publikacji:
Systematic Review; Journal Article
MeSH Terms:
Neural Networks, Computer*
Software*
Programming Languages ; Language ; Semantics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Bayesian estimation in NONMEM.
Autorzy:
Johnston CK; Metrum Research Group, Tariffville, Connecticut, USA.
Waterhouse T; Metrum Research Group, Tariffville, Connecticut, USA.
Wiens M; Metrum Research Group, Tariffville, Connecticut, USA.
Mondick J; Metrum Research Group, Tariffville, Connecticut, USA.
French J; Metrum Research Group, Tariffville, Connecticut, USA.
Gillespie WR; Metrum Research Group, Tariffville, Connecticut, USA.
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Źródło:
CPT: pharmacometrics & systems pharmacology [CPT Pharmacometrics Syst Pharmacol] 2024 Feb; Vol. 13 (2), pp. 192-207. Date of Electronic Publication: 2023 Dec 08.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Nonlinear Dynamics*
Humans ; Bayes Theorem ; Models, Biological
Czasopismo naukowe
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Tytuł:
DSpace 7 Benefits: Is It Worth Upgrading?
Autorzy:
Formanek, Matus
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Temat:
*Computer software
*Digital libraries
*Digital technology
*User interfaces
*Metadata
*Conceptual structures
*Search engines
*Archives
*Email
Software architecture
Data security
Źródło:
Information Technology & Libraries. Sep2023, Vol. 42 Issue 3, p1-31. 31p. 9 Color Photographs, 2 Diagrams, 4 Charts, 1 Graph.
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
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