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Wyszukujesz frazę ""Software"" wg kryterium: Temat


Tytuł:
A database for oncological research and quality assurance: implementation and first experiences with the University Clinical Cancer Registry Regensburg.
Autorzy:
Saibold A; Department of Information Technology, University Hospital Regensburg, Regensburg, Germany.; Bavarian Cancer Research Center (BZKF), Regensburg, Germany.
Koller M; Center for Clinical Studies, University Hospital Regensburg, Regensburg, Germany.
Mueller K; Center for Clinical Studies, University Hospital Regensburg, Regensburg, Germany.
Koelbl O; Department of Radiation Oncology, University Hospital Regensburg, Regensburg, Germany.
Vielsmeier V; Department of Otorhinolaryngology, Head and Neck Surgery, University Hospital Regensburg, Regensburg, Germany.
Pukrop T; Department of Internal Medicine 3, University Hospital Regensburg, Regensburg, Germany.
Spies O; Department of Information Technology, University Hospital Regensburg, Regensburg, Germany.
Eilers V; Department of Information Technology, University Hospital Regensburg, Regensburg, Germany.
Brese C; University Cancer Center Regensburg, University Hospital Regensburg, Franz-Josef-Strauss Allee 11, 93053, Regensburg, Germany.
Amann D; University Cancer Center Regensburg, University Hospital Regensburg, Franz-Josef-Strauss Allee 11, 93053, Regensburg, Germany.
Maurer J; Bavarian Cancer Research Center (BZKF), Regensburg, Germany. .; University Cancer Center Regensburg, University Hospital Regensburg, Franz-Josef-Strauss Allee 11, 93053, Regensburg, Germany. .
Źródło:
BMC medical research methodology [BMC Med Res Methodol] 2024 Mar 27; Vol. 24 (1), pp. 76. Date of Electronic Publication: 2024 Mar 27.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Neoplasms*/diagnosis
Neoplasms*/therapy
Humans ; Registries
Czasopismo naukowe
Tytuł:
CREDO: a friendly Customizable, REproducible, DOcker file generator for bioinformatics applications.
Autorzy:
Alessandri S; Polytechnic of Turin, Turin, Italy.
Ratto ML; Department of Molecular Biotechnology and Health Sciences, University of Torino, Turin, Italy.
Rabellino S; Department of Computer Science, University of Torino, Turin, Italy.
Piacenti G; Department of Molecular Biotechnology and Health Sciences, University of Torino, Turin, Italy.
Contaldo SG; Department of Computer Science, University of Torino, Turin, Italy.
Pernice S; Department of Computer Science, University of Torino, Turin, Italy.
Beccuti M; Department of Computer Science, University of Torino, Turin, Italy.
Calogero RA; Department of Molecular Biotechnology and Health Sciences, University of Torino, Turin, Italy. .
Alessandri L; Department of Molecular Biotechnology and Health Sciences, University of Torino, Turin, Italy.; Department of Pathology, Boston Children's Hospital, Harvard Medical School, Boston, MA, USA.
Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Mar 12; Vol. 25 (1), pp. 110. Date of Electronic Publication: 2024 Mar 12.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Computational Biology*/methods
Reproducibility of Results
Czasopismo naukowe
Tytuł:
TrieDedup: a fast trie-based deduplication algorithm to handle ambiguous bases in high-throughput sequencing.
Autorzy:
Hu J; Program in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA, USA.; Department of Biology, University of Washington, Seattle, WA, USA.
Luo S; Program in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA, USA.; Harvard Medical School, Boston, MA, USA.; Howard Hughes Medical Institute, Boston Children's Hospital, Boston, MA, USA.; School of Basic Medical Science, Tsinghua University, Beijing, China.
Tian M; Program in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA, USA.; Harvard Medical School, Boston, MA, USA.
Ye AY; Program in Cellular and Molecular Medicine, Boston Children's Hospital, Boston, MA, USA. .; Harvard Medical School, Boston, MA, USA. .; Howard Hughes Medical Institute, Boston Children's Hospital, Boston, MA, USA. .
Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Apr 18; Vol. 25 (1), pp. 154. Date of Electronic Publication: 2024 Apr 18.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Algorithms*
Genomics ; Gene Library ; High-Throughput Nucleotide Sequencing ; Sequence Analysis, DNA
Czasopismo naukowe
Tytuł:
PySmooth: a Python tool for the removal and correction of genotyping errors.
Autorzy:
Soibam B; Department of computer science and engineering technology, University of Houston- Downtown, Houston, TX, One Main St, 77002, USA. .
Roman G; Department of Biomolecular Sciences, School of Pharmacy, University of Mississippi, 415W Faser Hall, University, Oxford, Mississippi, MS, 38677-1848, USA.
Źródło:
BMC research notes [BMC Res Notes] 2024 Apr 11; Vol. 17 (1), pp. 103. Date of Electronic Publication: 2024 Apr 11.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Polymorphism, Single Nucleotide*
Humans ; Genotype ; Chromosome Mapping
Czasopismo naukowe
Tytuł:
KCO: Balancing class distribution in just-in-time software defect prediction using kernel crossover oversampling.
Autorzy:
Ismail AM; Department of Software Engineering, Faculty of Computer Science and Information Technology, University of Malaya, Kuala Lumpur, Malaysia.; Faculty of Computer Science and Mathematics, Universiti Malaysia Terengganu, Kuala Terengganu, Terengganu, Malaysia.
Ab Hamid SH; Department of Software Engineering, Faculty of Computer Science and Information Technology, University of Malaya, Kuala Lumpur, Malaysia.
Abdul Sani A; Department of Software Engineering, Faculty of Computer Science and Information Technology, University of Malaya, Kuala Lumpur, Malaysia.
Mohd Daud NN; Department of Software Engineering, Faculty of Computer Science and Information Technology, University of Malaya, Kuala Lumpur, Malaysia.
Źródło:
PloS one [PLoS One] 2024 Apr 11; Vol. 19 (4), pp. e0299585. Date of Electronic Publication: 2024 Apr 11 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Algorithms*
Software*
Cluster Analysis ; Forecasting
Czasopismo naukowe
Tytuł:
ChatGPT-Enhanced ROC Analysis (CERA): A shiny web tool for finding optimal cutoff points in biomarker analysis.
Autorzy:
Agraz M; Department of Statistics, Giresun University, Giresun, Turkiye.; Division of Applied Mathematics, Brown University, Providence, Rhode Island, United States of America.
Mantzoros C; Department of Medicine, Boston VA Healthcare System, and Department of Medicine, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA, United States of America.
Karniadakis GE; Division of Applied Mathematics, Brown University, Providence, Rhode Island, United States of America.; School of Engineering, Brown University, Providence, Rhode Island, United States of America.
Źródło:
PloS one [PLoS One] 2024 Apr 10; Vol. 19 (4), pp. e0289141. Date of Electronic Publication: 2024 Apr 10 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Programming Languages*
Humans ; ROC Curve ; Biomarkers
Czasopismo naukowe
Tytuł:
An easy to use tool for the analysis of subcellular mRNA transcript colocalisation in smFISH data.
Autorzy:
Bentley-Abbot C; Wellcome Centre for Integrative Parasitology (WCIP), University of Glasgow, Glasgow, UK. .; School of Biodiversity, One Health, Veterinary Medicine (SBOHVM), College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK. .; MRC-University of Glasgow Centre for Virus Research, University of Glasgow, Glasgow, UK. .
Heslop R; Wellcome Centre for Integrative Parasitology (WCIP), University of Glasgow, Glasgow, UK.; School of Biodiversity, One Health, Veterinary Medicine (SBOHVM), College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK.
Pirillo C; Beatson Institute for Cancer Research, Glasgow, UK.
Chandrasegaran P; Wellcome Centre for Integrative Parasitology (WCIP), University of Glasgow, Glasgow, UK.; School of Biodiversity, One Health, Veterinary Medicine (SBOHVM), College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK.
McConnell G; Department of Physics, University of Strathclyde, Glasgow, UK.
Roberts E; Beatson Institute for Cancer Research, Glasgow, UK.
Hutchinson E; MRC-University of Glasgow Centre for Virus Research, University of Glasgow, Glasgow, UK.
MacLeod A; Wellcome Centre for Integrative Parasitology (WCIP), University of Glasgow, Glasgow, UK.; School of Biodiversity, One Health, Veterinary Medicine (SBOHVM), College of Medical, Veterinary and Life Sciences, University of Glasgow, Glasgow, UK.
Źródło:
Scientific reports [Sci Rep] 2024 Apr 09; Vol. 14 (1), pp. 8348. Date of Electronic Publication: 2024 Apr 09.
Typ publikacji:
Journal Article
MeSH Terms:
Image Processing, Computer-Assisted*
Software*
Animals ; Mice ; RNA, Messenger/metabolism ; In Situ Hybridization, Fluorescence/methods ; Up-Regulation
Czasopismo naukowe
Tytuł:
DPI_CDF: druggable protein identifier using cascade deep forest.
Autorzy:
Arif M; College of Science and Engineering, Hamad Bin Khalifa University, Doha, Qatar.
Fang G; State Key Laboratory for Organic Electronics and Information Displays, Institute of Advanced Materials (IAM), Nanjing 210023, P. R. China, Nanjing 210023, China.; Center for Research Innovation and Biomedical Informatics, Faculty of Medical Technology, Mahidol University, Bankok, 10700, Thailand.
Ghulam A; Information Technology Centre, Sindh Agriculture University, Sindh, Pakistan.
Musleh S; College of Science and Engineering, Hamad Bin Khalifa University, Doha, Qatar.
Alam T; College of Science and Engineering, Hamad Bin Khalifa University, Doha, Qatar. .
Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Apr 05; Vol. 25 (1), pp. 145. Date of Electronic Publication: 2024 Apr 05.
Typ publikacji:
Journal Article
MeSH Terms:
Proteins*
Software*
Amino Acid Sequence ; Position-Specific Scoring Matrices ; Biological Evolution ; Computational Biology/methods
Czasopismo naukowe
Tytuł:
Insect detect: An open-source DIY camera trap for automated insect monitoring.
Autorzy:
Sittinger M; Julius Kühn Institute (JKI)-Federal Research Centre for Cultivated Plants, Institute for Biological Control, Dossenheim, Germany.
Uhler J; Julius Kühn Institute (JKI)-Federal Research Centre for Cultivated Plants, Institute for Biological Control, Dossenheim, Germany.
Pink M; Julius Kühn Institute (JKI)-Federal Research Centre for Cultivated Plants, Institute for Biological Control, Dossenheim, Germany.
Herz A; Julius Kühn Institute (JKI)-Federal Research Centre for Cultivated Plants, Institute for Biological Control, Dossenheim, Germany.
Źródło:
PloS one [PLoS One] 2024 Apr 03; Vol. 19 (4), pp. e0295474. Date of Electronic Publication: 2024 Apr 03 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Insecta*
Software*
Animals ; Biodiversity ; Data Collection ; Metadata
Czasopismo naukowe
Tytuł:
CITEViz: interactively classify cell populations in CITE-Seq via a flow cytometry-like gating workflow using R-Shiny.
Autorzy:
Kong GL; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health and Science University, 3181 SW Sam Jackson Pk. Rd., KR-HEM, Portland, OR, 97239, USA.
Nguyen TT; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health and Science University, 3181 SW Sam Jackson Pk. Rd., KR-HEM, Portland, OR, 97239, USA.
Rosales WK; Earle A. Chiles Research Institute, Providence, Portland, OR, 97213, USA.
Panikar AD; Knight Campus Graduate Internship Program - Bioinformatics, University of Oregon, Eugene, OR, 97403, USA.
Cheney JHW; Knight Campus Graduate Internship Program - Bioinformatics, University of Oregon, Eugene, OR, 97403, USA.
Lusardi TA; Cancer Early Detection Advanced Research, Oregon Health and Science University, Portland, OR, 97238, USA.
Yashar WM; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health and Science University, 3181 SW Sam Jackson Pk. Rd., KR-HEM, Portland, OR, 97239, USA.; Department of Biomedical Engineering, Oregon Health and Science University, Portland, USA.
Curtiss BM; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health and Science University, 3181 SW Sam Jackson Pk. Rd., KR-HEM, Portland, OR, 97239, USA.
Carratt SA; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health and Science University, 3181 SW Sam Jackson Pk. Rd., KR-HEM, Portland, OR, 97239, USA.
Braun TP; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health and Science University, 3181 SW Sam Jackson Pk. Rd., KR-HEM, Portland, OR, 97239, USA. .; Division of Hematology and Medical Oncology, Oregon Health and Science University, Portland, USA. .
Maxson JE; Division of Oncologic Sciences, Knight Cancer Institute, Oregon Health and Science University, 3181 SW Sam Jackson Pk. Rd., KR-HEM, Portland, OR, 97239, USA. .
Źródło:
BMC bioinformatics [BMC Bioinformatics] 2024 Apr 02; Vol. 25 (1), pp. 142. Date of Electronic Publication: 2024 Apr 02.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Leukocytes, Mononuclear*
Humans ; Sequence Analysis, RNA/methods ; Workflow ; Flow Cytometry ; Membrane Proteins ; Single-Cell Analysis/methods ; Gene Expression Profiling/methods
Czasopismo naukowe
Tytuł:
shinyMBA: a novel R shiny application for quality control of the multiplex bead assay for serosurveillance studies.
Autorzy:
Matson Z; Viral Vaccine Preventable Diseases Branch, Division of Viral Diseases, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA. .
Cooley G; Division of Parasitic Diseases and Malaria, Center for Global Health, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Parameswaran N; Division of Parasitic Diseases and Malaria, Center for Global Health, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Simon A; Division of Parasitic Diseases and Malaria, Center for Global Health, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Bankamp B; Viral Vaccine Preventable Diseases Branch, Division of Viral Diseases, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Coughlin MM; Laboratory Branch, Coronavirus and Other Respiratory Viruses Division, National Center for Immunization and Respiratory Diseases, Centers for Disease Control and Prevention, Atlanta, GA, USA.
Źródło:
Scientific reports [Sci Rep] 2024 Mar 28; Vol. 14 (1), pp. 7442. Date of Electronic Publication: 2024 Mar 28.
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Seroepidemiologic Studies ; Quality Control ; Reference Standards ; Workflow
Czasopismo naukowe
Tytuł:
Comparative study on differential expression analysis methods for single-cell RNA sequencing data with small biological replicates: Based on single-cell transcriptional data of PBMCs from COVID-19 severe patients.
Autorzy:
Xue J; Department of Statistics, School of Economics, Hangzhou Dianzi University, Hangzhou, China.
Zhou X; Department of Statistics, School of Economics, Hangzhou Dianzi University, Hangzhou, China.
Yang J; Department of Statistics, School of Economics, Hangzhou Dianzi University, Hangzhou, China.
Niu A; Department of Statistics, School of Economics, Hangzhou Dianzi University, Hangzhou, China.
Źródło:
PloS one [PLoS One] 2024 Mar 27; Vol. 19 (3), pp. e0299358. Date of Electronic Publication: 2024 Mar 27 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Software*
COVID-19*/genetics
Humans ; Gene Expression Profiling/methods ; Sequence Analysis, RNA/methods ; Algorithms ; Single-Cell Analysis/methods ; Cluster Analysis
Czasopismo naukowe
Tytuł:
An open-source FACS automation system for high-throughput cell biology.
Autorzy:
Wiener DM; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
Huynh E; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
Jeyakumar I; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
Bax S; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
Sama S; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
Cabrera JP; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
Todorova V; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
Vangipuram M; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
Vaid S; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
Otsuka F; Medical Business Group, Sony Corporation, San Jose, California, United States of America.
Sakai Y; Medical Business Group, Sony Corporation, San Jose, California, United States of America.
Leonetti MD; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
Gómez-Sjöberg R; Chan Zuckerberg Biohub-San Francisco, San Francisco, California, United States of America.
Źródło:
PloS one [PLoS One] 2024 Mar 21; Vol. 19 (3), pp. e0299402. Date of Electronic Publication: 2024 Mar 21 (Print Publication: 2024).
Typ publikacji:
Journal Article
MeSH Terms:
Software*
Automation ; Flow Cytometry/methods
Czasopismo naukowe

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