Autor: "Stuart S. Brown" - OpacWWW

Skocz do pozycji: 1.

Tytuł:: De novo assembly and annotation of the singing mouse genome.
Autorzy:: Smith SK; Department of Integrative Biology, University of Texas at Austin, Austin, TX, 78712, USA. .
Frazel PW; Department of Neuroscience and Physiology, New York University Grossman School of Medicine, New York, NY, 10016, USA.
Khodadadi-Jamayran A; Applied Bioinformatics Laboratory, New York University Grossman School of Medicine, New York, NY, 10016, USA.
Zappile P; Genome Technology Center, New York University Grossman School of Medicine, New York, NY, 10016, USA.
Marier C; Genome Technology Center, New York University Grossman School of Medicine, New York, NY, 10016, USA.
Okhovat M; Department of Integrative Biology, University of Texas at Austin, Austin, TX, 78712, USA.; Present Address: Oregon Health & Science University, Portland, OR, USA.
Brown S; NYU Center for Health Informatics and Bioinformatics, New York University Grossman School of Medicine, New York, NY, 10016, USA.; Present Address: Exxon Mobil Corporate, Houston, TX, USA.
Long MA; Department of Neuroscience and Physiology, New York University Grossman School of Medicine, New York, NY, 10016, USA.
Heguy A; Genome Technology Center, New York University Grossman School of Medicine, New York, NY, 10016, USA.
Phelps SM; Department of Integrative Biology, University of Texas at Austin, Austin, TX, 78712, USA.; Pokaż więcej
Źródło:: BMC genomics [BMC Genomics] 2023 Sep 26; Vol. 24 (1), pp. 569. Date of Electronic Publication: 2023 Sep 26.
Typ publikacji:: Journal Article
MeSH Terms:: Genomics*
Biological Evolution*
Male ; Animals ; Mice ; Multifactorial Inheritance ; Phenotype ; Reproduction

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Skocz do pozycji: 2.

Tytuł:: Oral Microbiome in Nonsmoker Patients with Oral Cavity Squamous Cell Carcinoma, Defined by Metagenomic Shotgun Sequencing.
Autorzy:: Ganly I; Head and Neck Service, Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Hao Y; Department of Pathology, NYU Grossman School of Medicine, New York, NY 10016, USA.; Center for Genomics and Systems Biology, Department of Biology, New York University, New York, NY 10003, USA.
Rosenthal M; Head and Neck Service, Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Wang H; Department of Laboratory Medicine, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.; Division of Infectious Diseases, Shenzhen Children's Hospital, Shenzhen 518026, China.
Migliacci J; Head and Neck Service, Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Huang B; Department of Laboratory Medicine, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.; Department of Laboratory Medicine, The First Affiliated Hospital of Sun Yat-sen University, Guangzhou 510080, China.
Katabi N; Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.
Brown S; Applied Bioinformatics Laboratories, NYU Grossman School of Medicine, New York, NY 10016, USA.
Tang YW; Department of Laboratory Medicine, Memorial Sloan Kettering Cancer Center, New York, NY 10065, USA.; Medical Affairs, Cepheid, Danaher Diagnostic Platform, Shanghai 200335, China.
Pei Z; Department of Pathology, NYU Grossman School of Medicine, New York, NY 10016, USA.; Department of Medicine, NYU Grossman School of Medicine, New York, NY 10016, USA.; Pathology and Laboratory Medicine Service, Department of Veterans Affairs New York Harbor Healthcare System, New York, NY 10010, USA.
Yang L; Department of Pathology, NYU Grossman School of Medicine, New York, NY 10016, USA.; Department of Medicine, NYU Grossman School of Medicine, New York, NY 10016, USA.; Pokaż więcej
Źródło:: Cancers [Cancers (Basel)] 2022 Dec 11; Vol. 14 (24). Date of Electronic Publication: 2022 Dec 11.
Typ publikacji:: Journal Article

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Skocz do pozycji: 3.

Tytuł:: Case control study comparing the HPV genome in patients with oral cavity squamous cell carcinoma to normal patients using metagenomic shotgun sequencing.
Autorzy:: Ganly I; Head and Neck Service, Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, USA. .
Pei Z; Department of Pathology, New York University School of Medicine, New York, 10016, USA.; Department of Medicine, New York University School of Medicine, New York, 10016, USA.; Department of Veterans Affairs, New York Harbor Healthcare System, New York, USA.
Hao Y; Department of Pathology, New York University School of Medicine, New York, 10016, USA.; Applied Bioinformatics Laboratories, New York University School of Medicine, New York, 10016, USA.; Center for Genomics and Systems Biology, Department of Biology, New York University, New York, NY, 10016, USA.
Ma Y; Department of Medicine, New York University School of Medicine, New York, 10016, USA.; Institute of Synthetic Biology, Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, Shenzhen, 518000, China.
Rosenthal M; Head and Neck Service, Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, USA.
Wu Z; Department of Laboratory Medicine, Memorial Sloan Kettering Cancer Center, New York, USA.; Department of Laboratory Medicine, The Eighth Affiliated Hospital of Sun Yat-Sen University, Shenzhen, China.
Migliacci J; Head and Neck Service, Department of Surgery, Memorial Sloan Kettering Cancer Center, New York, USA.
Huang B; Department of Laboratory Medicine, Memorial Sloan Kettering Cancer Center, New York, USA.; Department of Laboratory Medicine, The First Affiliated Hospital of Sun Yat-Sen University, Guangzhou, China.
Katabi N; Department of Pathology, Memorial Sloan Kettering Cancer Center, New York, USA.
Tseng W; Department of Pathology, New York University School of Medicine, New York, 10016, USA.
Brown S; Applied Bioinformatics Laboratories, New York University School of Medicine, New York, 10016, USA.
Tang YW; Department of Laboratory Medicine, Memorial Sloan Kettering Cancer Center, New York, USA.; Medical Affairs, Cepheid, Danaher Diagnostic Platform, Shanghai, China.
Yang L; Department of Pathology, New York University School of Medicine, New York, 10016, USA. .; Department of Medicine, New York University School of Medicine, New York, 10016, USA. .; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2021 Feb 16; Vol. 11 (1), pp. 3867. Date of Electronic Publication: 2021 Feb 16.
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:: Metagenome*
Alphapapillomavirus/*genetics
Carcinoma, Squamous Cell/*virology
Mouth Neoplasms/*virology
Aged ; Case-Control Studies ; Female ; High-Throughput Nucleotide Sequencing ; Humans ; Male ; Middle Aged

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Skocz do pozycji: 4.

Tytuł:: Glass promotes the differentiation of neuronal and non-neuronal cell types in the Drosophila eye.
Autorzy:: Morrison CA; Skirball Institute for Biomolecular Medicine and Department of Cell Biology, NYU School of Medicine, New York, NY, United States of America.
Chen H; Department of Cell Biology, NYU School of Medicine, New York, NY, United States of America.
Cook T; Center of Molecular Medicine and Genomics and Department of Ophthalmology, Wayne State University School of Medicine, Detroit, MI, United States of America.
Brown S; Department of Cell Biology, NYU School of Medicine, New York, NY, United States of America.
Treisman JE; Skirball Institute for Biomolecular Medicine and Department of Cell Biology, NYU School of Medicine, New York, NY, United States of America.; Pokaż więcej
Źródło:: PLoS genetics [PLoS Genet] 2018 Jan 11; Vol. 14 (1), pp. e1007173. Date of Electronic Publication: 2018 Jan 11 (Print Publication: 2018).
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:: Drosophila melanogaster*/embryology
Drosophila melanogaster*/genetics
Cell Differentiation/*genetics
DNA-Binding Proteins/*physiology
Drosophila Proteins/*physiology
Eye/*embryology
Eye/*metabolism
Neural Stem Cells/*physiology
Stem Cells/*physiology
Animals ; Animals, Genetically Modified ; DNA-Binding Proteins/genetics ; Drosophila Proteins/genetics ; Embryo, Nonmammalian ; Eye/cytology ; Female ; Gene Expression Regulation, Developmental ; Organogenesis/genetics

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Skocz do pozycji: 5.

Tytuł:: REST is a hypoxia-responsive transcriptional repressor.
Autorzy:: Cavadas MA; Systems Biology Ireland, University College Dublin, Dublin 4, Ireland.; Conway Institute of Biomolecular and Biomedical Research, School of Medicine and Medical Sciences, University College Dublin, Dublin 4, Ireland.; Instituto Gulbenkian de Ciência, Rua da Quinta Grande, 2780-156 Oeiras, Portugal.
Mesnieres M; Conway Institute of Biomolecular and Biomedical Research, School of Medicine and Medical Sciences, University College Dublin, Dublin 4, Ireland.
Crifo B; Conway Institute of Biomolecular and Biomedical Research, School of Medicine and Medical Sciences, University College Dublin, Dublin 4, Ireland.
Manresa MC; Conway Institute of Biomolecular and Biomedical Research, School of Medicine and Medical Sciences, University College Dublin, Dublin 4, Ireland.
Selfridge AC; Conway Institute of Biomolecular and Biomedical Research, School of Medicine and Medical Sciences, University College Dublin, Dublin 4, Ireland.
Keogh CE; Conway Institute of Biomolecular and Biomedical Research, School of Medicine and Medical Sciences, University College Dublin, Dublin 4, Ireland.
Fabian Z; Conway Institute of Biomolecular and Biomedical Research, School of Medicine and Medical Sciences, University College Dublin, Dublin 4, Ireland.
Scholz CC; Systems Biology Ireland, University College Dublin, Dublin 4, Ireland.; Conway Institute of Biomolecular and Biomedical Research, School of Medicine and Medical Sciences, University College Dublin, Dublin 4, Ireland.; Institute of Physiology and Zurich Centre for Integrative Human Physiology, University of Zurich, Zurich, Switzerland.
Nolan KA; Institute of Physiology and Zurich Centre for Integrative Human Physiology, University of Zurich, Zurich, Switzerland.; Diabetes Complications Research Centre, School of Medicine and Medical Sciences, University College Dublin, Dublin 4, Ireland.
Rocha LM; Faculdade de Medicina, Universidade de Lisboa, 1649-028 Lisbon, Portugal.
Tambuwala MM; School of Pharmacy and Pharmaceutical Sciences, University of Ulster, Coleraine, Co. Londonderry, BT52 1SA, Northern Ireland, UK.
Brown S; Center for Health Informatics and Bioinformatics, New York University School of Medicine, New York, NY 10016, USA.
Wdowicz A; Neurotherapeutics Research Group, UCD School of Biomolecular and Biomedical Science, Conway Institute, University College Dublin, Belfield, Dublin 4, Ireland.
Corbett D; Neurotherapeutics Research Group, UCD School of Biomolecular and Biomedical Science, Conway Institute, University College Dublin, Belfield, Dublin 4, Ireland.
Murphy KJ; Neurotherapeutics Research Group, UCD School of Biomolecular and Biomedical Science, Conway Institute, University College Dublin, Belfield, Dublin 4, Ireland.
Godson C; Diabetes Complications Research Centre, School of Medicine and Medical Sciences, University College Dublin, Dublin 4, Ireland.
Cummins EP; Conway Institute of Biomolecular and Biomedical Research, School of Medicine and Medical Sciences, University College Dublin, Dublin 4, Ireland.
Taylor CT; Systems Biology Ireland, University College Dublin, Dublin 4, Ireland.; Conway Institute of Biomolecular and Biomedical Research, School of Medicine and Medical Sciences, University College Dublin, Dublin 4, Ireland.
Cheong A; Systems Biology Ireland, University College Dublin, Dublin 4, Ireland.; Conway Institute of Biomolecular and Biomedical Research, School of Medicine and Medical Sciences, University College Dublin, Dublin 4, Ireland.; Life and Health Sciences, Aston University, Birmingham, B4 7ET, UK.; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2016 Aug 17; Vol. 6, pp. 31355. Date of Electronic Publication: 2016 Aug 17.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Transcription, Genetic*
Repressor Proteins/*genetics
Repressor Proteins/*metabolism
Sequence Analysis, RNA/*methods
Cell Hypoxia ; Cell Line ; Cell Nucleus/genetics ; Cell Nucleus/metabolism ; Gene Expression Profiling ; Gene Expression Regulation ; Gene Regulatory Networks ; HEK293 Cells ; Humans ; Promoter Regions, Genetic ; Signal Transduction

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Skocz do pozycji: 6.

Tytuł:: Bodily attractiveness and egalitarianism are negatively related in males.
Autorzy:: Price ME; Department of Psychology, Brunel University, London, UK.
Brown S; Department of Psychology, Brunel University, London, UK.
Dukes A; Department of Psychology, Brunel University, London, UK.
Kang J; School of Engineering and Design, Brunel University, London, UK.; Pokaż więcej
Źródło:: Evolutionary psychology : an international journal of evolutionary approaches to psychology and behavior [Evol Psychol] 2015 Feb 09; Vol. 13 (1), pp. 140-66. Date of Electronic Publication: 2015 Feb 09.
Typ publikacji:: Journal Article
MeSH Terms:: Beauty*
Body Constitution*
Social Values*
Adult ; Anthropometry ; Female ; Humans ; Male ; Sex Factors ; Social Class ; Young Adult

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Skocz do pozycji: 7.

Tytuł:: FIREWACh: high-throughput functional detection of transcriptional regulatory modules in mammalian cells.
Autorzy:: Murtha M; Department of Microbiology, New York University School of Medicine, New York, New York, USA.
Tokcaer-Keskin Z; Department of Microbiology, New York University School of Medicine, New York, New York, USA.
Tang Z; Center for Health Informatics and Bioinformatics, New York University School of Medicine, New York, New York, USA.
Strino F; Department of Biology and Biological Sciences, Yale University, New Haven, Connecticut, USA.
Chen X; Department of Biology, New York University, New York, New York, USA.
Wang Y; Department of Microbiology, New York University School of Medicine, New York, New York, USA.
Xi X; Department of Microbiology, New York University School of Medicine, New York, New York, USA.
Basilico C; Department of Microbiology, New York University School of Medicine, New York, New York, USA.
Brown S; Center for Health Informatics and Bioinformatics, New York University School of Medicine, New York, New York, USA.
Bonneau R; 1] Department of Biology, New York University, New York, New York, USA. [2] Department of Computer Science, Courant Institute of Mathematical Sciences, New York, New York, USA.
Kluger Y; Department of Biology and Biological Sciences, Yale University, New Haven, Connecticut, USA.
Dailey L; Department of Microbiology, New York University School of Medicine, New York, New York, USA.; Pokaż więcej
Źródło:: Nature methods [Nat Methods] 2014 May; Vol. 11 (5), pp. 559-65. Date of Electronic Publication: 2014 Mar 23.
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:: Enhancer Elements, Genetic*
Gene Expression Regulation*
High-Throughput Nucleotide Sequencing*
Promoter Regions, Genetic*
Animals ; Binding Sites ; Chromatin/chemistry ; Computational Biology ; Deoxyribonuclease I/metabolism ; Embryonic Stem Cells/cytology ; Flow Cytometry ; Gene Library ; Genes, Reporter ; Genetic Techniques ; Genome ; Green Fluorescent Proteins/metabolism ; Kruppel-Like Factor 4 ; Lentivirus/genetics ; Lentivirus/metabolism ; Luciferases/metabolism ; Mice ; Plasmids/metabolism ; Transcription, Genetic ; Transgenes

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Skocz do pozycji: 8.

Tytuł:: Genetic inactivation of the polycomb repressive complex 2 in T cell acute lymphoblastic leukemia.
Autorzy:: Ntziachristos P; Howard Hughes Medical Institute and Department of Pathology, New York University School of Medicine, New York, New York, USA.
Tsirigos A
Van Vlierberghe P
Nedjic J
Trimarchi T
Flaherty MS
Ferres-Marco D
da Ros V
Tang Z
Siegle J
Asp P
Hadler M
Rigo I
De Keersmaecker K
Patel J
Huynh T
Utro F
Poglio S
Samon JB
Paietta E
Racevskis J
Rowe JM
Rabadan R
Levine RL
Brown S
Pflumio F
Dominguez M
Ferrando A
Aifantis I; Pokaż więcej
Źródło:: Nature medicine [Nat Med] 2012 Feb 06; Vol. 18 (2), pp. 298-301. Date of Electronic Publication: 2012 Feb 06.
Typ publikacji:: Journal Article; Research Support, American Recovery and Reinvestment Act; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:: Precursor T-Cell Lymphoblastic Leukemia-Lymphoma/*genetics
Repressor Proteins/*metabolism
Animals ; Carrier Proteins/genetics ; Carrier Proteins/metabolism ; Cell Line, Tumor ; DNA-Binding Proteins/genetics ; DNA-Binding Proteins/metabolism ; Enhancer of Zeste Homolog 2 Protein ; Epigenesis, Genetic/genetics ; Gene Expression Regulation, Neoplastic/genetics ; Gene Silencing/physiology ; Histone-Lysine N-Methyltransferase/genetics ; Histone-Lysine N-Methyltransferase/metabolism ; Humans ; Mice ; Neoplasm Proteins ; Nuclear Proteins/genetics ; Nuclear Proteins/metabolism ; Oligonucleotide Array Sequence Analysis ; Polycomb Repressive Complex 2 ; Polycomb-Group Proteins ; Precursor T-Cell Lymphoblastic Leukemia-Lymphoma/metabolism ; Receptor, Notch1/genetics ; Receptor, Notch1/metabolism ; Repressor Proteins/genetics ; Transcription Factors/genetics ; Transcription Factors/metabolism

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Skocz do pozycji: 9.

Tytuł:: Combining multiple ChIP-seq peak detection systems using combinatorial fusion.
Autorzy:: Schweikert C; Laboratory for Informatics and Data Mining, Department of Computer and Information Science, Fordham University, New York, NY 10023, USA. />Brown S
Tang Z
Smith PR
Hsu DF; Pokaż więcej
Źródło:: BMC genomics [BMC Genomics] 2012; Vol. 13 Suppl 8, pp. S12. Date of Electronic Publication: 2012 Dec 17.
Typ publikacji:: Journal Article
MeSH Terms:: Algorithms*
Chromatin Immunoprecipitation*
Antibodies/immunology ; DNA/metabolism ; High-Throughput Nucleotide Sequencing ; Humans ; Protein Binding ; Proteins/immunology ; Proteins/metabolism