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Wyszukujesz frazę ""Systems Biology"" wg kryterium: Temat


Tytuł:
Comparative proteomic analysis of mustard lung as a complicated disease using systems biology approach.
Autorzy:
Parvin S; Education Office, Pasteur Institute of Iran, Tehran, Iran.
Arabfard M; Chemical Injuries Research Center, Systems Biology and Poisonings Institute, Baqiyatallah University of Medical Sciences, Tehran, Iran.
Ghazvini A; Chemical Injuries Research Center, Systems Biology and Poisonings Institute, Baqiyatallah University of Medical Sciences, Tehran, Iran.
Ghanei M; Chemical Injuries Research Center, Systems Biology and Poisonings Institute, Baqiyatallah University of Medical Sciences, Tehran, Iran.
Najafi A; Molecular Biology Research Center, Systems Biology and Poisonings Institute, Baqiyatallah University of Medical Sciences, Tehran, Iran. .
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Źródło:
BMC pulmonary medicine [BMC Pulm Med] 2022 Nov 23; Vol. 22 (1), pp. 437. Date of Electronic Publication: 2022 Nov 23.
Typ publikacji:
Journal Article
MeSH Terms:
Systems Biology*
Proteomics*
Humans ; Mustard Plant ; Disease Progression ; Lung
Czasopismo naukowe
Tytuł:
SyBLaRS: A web service for laying out, rendering and mining biological maps in SBGN, SBML and more.
Autorzy:
Balci H; i-Vis Research Lab, Computer Engineering Department, Bilkent University, Ankara, Turkey.
Dogrusoz U; i-Vis Research Lab, Computer Engineering Department, Bilkent University, Ankara, Turkey.
Ozgul YZ; i-Vis Research Lab, Computer Engineering Department, Bilkent University, Ankara, Turkey.
Atayev P; Odoo S.A., Chaussée de Namur, Belgium.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2022 Nov 14; Vol. 18 (11), pp. e1010635. Date of Electronic Publication: 2022 Nov 14 (Print Publication: 2022).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Systems Biology*/methods
Software*
Algorithms ; Models, Biological
Czasopismo naukowe
Tytuł:
A curated collection of human vaccination response signatures.
Autorzy:
Smith KC; Department of Systems Biology, Columbia University, New York, New York, USA.
Chawla DG; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA.
Dhillon BK; Department of Microbiology & Immunology, University of British Columbia, Vancouver, Canada.
Ji Z; Department of Systems Biology, Columbia University, New York, New York, USA.
Vita R; Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA.
van der Leest EC; Department of Microbiology & Immunology, University of British Columbia, Vancouver, Canada.
Weng JYJ; Department of Microbiology & Immunology, University of British Columbia, Vancouver, Canada.
Tang E; Department of Microbiology & Immunology, University of British Columbia, Vancouver, Canada.
Abid A; Department of Microbiology & Immunology, University of British Columbia, Vancouver, Canada.
Peters B; Center for Infectious Disease and Vaccine Research, La Jolla Institute for Immunology, La Jolla, CA, USA.; Department of Medicine, Division of Infectious Diseases and Global Public Health, University of California, San Diego, La Jolla, CA, USA.
Hancock REW; Department of Microbiology & Immunology, University of British Columbia, Vancouver, Canada.
Floratos A; Department of Systems Biology, Columbia University, New York, New York, USA. .; Department of Biomedical Informatics, Columbia University, New York, New York, USA. .
Kleinstein SH; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, USA. .; Department of Pathology, Yale School of Medicine, New Haven, CT, USA. .; Department of Immunobiology, Yale School of Medicine, New Haven, CT, USA. .
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Corporate Authors:
Human Immunology Project Consortium (HIPC)
Źródło:
Scientific data [Sci Data] 2022 Nov 08; Vol. 9 (1), pp. 678. Date of Electronic Publication: 2022 Nov 08.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural
MeSH Terms:
Software*
Systems Biology*
Vaccination*
Humans ; Metadata
Czasopismo naukowe
Tytuł:
Omics Methods in Toxins Research-A Toolkit to Drive the Future of Scientific Inquiry.
Autorzy:
Romano JD; Center of Excellence in Environmental Toxicology, University of Pennsylvania, Philadelphia, PA 19104, USA.; Institute for Biomedical Informatics, University of Pennsylvania, Philadelphia, PA 19104, USA.; Department of Biostatistics, Epidemiology & Informatics, University of Pennsylvania, Philadelphia, PA 19104, USA.
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Źródło:
Toxins [Toxins (Basel)] 2022 Nov 04; Vol. 14 (11). Date of Electronic Publication: 2022 Nov 04.
Typ publikacji:
Editorial
MeSH Terms:
Systems Biology*/methods
Biomedical Research*/methods
Forecasting
Opinia redakcyjna
Tytuł:
Network inference from perturbation time course data.
Autorzy:
Sarmah D; Department of Chemical and Biomolecular Engineering, Clemson University, Clemson, SC, USA.
Smith GR; Department of Neurology, Center for Advanced Research on Diagnostic Assays, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Bouhaddou M; J. David Gladstone Institutes, San Francisco, CA, 94158, USA.; Department of Cellular and Molecular Pharmacology, University of California San Francisco, San Francisco, CA, 94158, USA.
Stern AD; Department of Pharmacological Sciences, Icahn School of Medicine at Mount Sinai, New York, NY, USA.
Erskine J; Department of Chemical and Biomolecular Engineering, Clemson University, Clemson, SC, USA.
Birtwistle MR; Department of Chemical and Biomolecular Engineering, Clemson University, Clemson, SC, USA. .; Department of Bioengineering, Clemson University, Clemson, SC, USA. .
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Źródło:
NPJ systems biology and applications [NPJ Syst Biol Appl] 2022 Nov 01; Vol. 8 (1), pp. 42. Date of Electronic Publication: 2022 Nov 01.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural
MeSH Terms:
Systems Biology*/methods
Algorithms*
Gene Regulatory Networks/genetics ; Signal Transduction/physiology
Czasopismo naukowe
Tytuł:
Bayesian parameter estimation for dynamical models in systems biology.
Autorzy:
Linden NJ; Department of Mechanical and Aerospace Engineering, University of California San Diego, San Diego, California, United States of America.
Kramer B; Department of Mechanical and Aerospace Engineering, University of California San Diego, San Diego, California, United States of America.
Rangamani P; Department of Mechanical and Aerospace Engineering, University of California San Diego, San Diego, California, United States of America.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2022 Oct 21; Vol. 18 (10), pp. e1010651. Date of Electronic Publication: 2022 Oct 21 (Print Publication: 2022).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural
MeSH Terms:
Systems Biology*/methods
Models, Biological*
Bayes Theorem ; Kinetics ; Signal Transduction/physiology
Czasopismo naukowe
Tytuł:
Computational systems biology in disease modeling and control, review and perspectives.
Autorzy:
Yue R; Department of Electrical and Computer Engineering, University of Connecticut, 371 Fairfield Way, Storrs, CT, 06269, USA. .
Dutta A; Department of Electrical and Computer Engineering, University of Connecticut, 371 Fairfield Way, Storrs, CT, 06269, USA.
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Źródło:
NPJ systems biology and applications [NPJ Syst Biol Appl] 2022 Oct 03; Vol. 8 (1), pp. 37. Date of Electronic Publication: 2022 Oct 03.
Typ publikacji:
Journal Article; Review; Research Support, Non-U.S. Gov't
MeSH Terms:
Proteomics*
Systems Biology*/methods
Genomics/methods ; Humans
Czasopismo naukowe
Tytuł:
Unsupervised and semi-supervised learning: the next frontier in machine learning for plant systems biology.
Autorzy:
Yan J; Frontiers Science Center for Molecular Design Breeding, China Agricultural University, Beijing, 100094, China.; National Maize Improvement Center, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100094, China.
Wang X; Frontiers Science Center for Molecular Design Breeding, China Agricultural University, Beijing, 100094, China.; National Maize Improvement Center, College of Agronomy and Biotechnology, China Agricultural University, Beijing, 100094, China.
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Źródło:
The Plant journal : for cell and molecular biology [Plant J] 2022 Sep; Vol. 111 (6), pp. 1527-1538. Date of Electronic Publication: 2022 Jul 27.
Typ publikacji:
Journal Article; Review; Research Support, Non-U.S. Gov't
MeSH Terms:
Supervised Machine Learning*
Systems Biology*
Algorithms ; Machine Learning ; Plants/genetics
Czasopismo naukowe
Tytuł:
dRNASb: a systems biology approach to decipher dynamics of host-pathogen interactions using temporal dual RNA-seq data.
Autorzy:
Dinarvand M; School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW, Australia.
Koch FC; School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW, Australia.
Al Mouiee D; School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW, Australia.; Ingham Institute for Applied Medical Research, Liverpool, NSW, Australia.; UNSW Data Science Hub, University of New South Wales, Sydney, NSW, Australia.
Vuong K; School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW, Australia.
Vijayan A; School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW, Australia.
Tanzim AF; School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW, Australia.
Azad AKM; ProCan®, Children's Medical Research Institute, Faculty of Medicine and Health, The University of Sydney, Westmead, NSW, Australia.
Penesyan A; School of Natural Sciences, Faculty of Science and Engineering, Macquarie University, Sydney, NSW, Australia.
Castaño-Rodríguez N; School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW, Australia.
Vafaee F; School of Biotechnology and Biomolecular Sciences, University of New South Wales, Sydney, NSW, Australia.; UNSW Data Science Hub, University of New South Wales, Sydney, NSW, Australia.
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Źródło:
Microbial genomics [Microb Genom] 2022 Sep; Vol. 8 (9).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Host-Pathogen Interactions*/genetics
Systems Biology*
Humans ; RNA-Seq ; Transcriptome ; Virulence/genetics
Czasopismo naukowe
Tytuł:
Design considerations for representing systems biology information with the Systems Biology Graphical Notation.
Autorzy:
Schreiber F; Department of Computer and Information Science, University of Konstanz, Konstanz, Germany.; Faculty of Information Technology, Monash University, Clayton, Australia.
Czauderna T; Faculty of Information Technology, Monash University, Clayton, Australia.; Faculty of Applied Computer Sciences & Biosciences, University of Applied Sciences Mittweida, Mittweida, Germany .
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Źródło:
Journal of integrative bioinformatics [J Integr Bioinform] 2022 Jul 04; Vol. 19 (2). Date of Electronic Publication: 2022 Jul 04.
Typ publikacji:
Journal Article
MeSH Terms:
Computer Graphics*
Systems Biology*
Models, Biological
Czasopismo naukowe
Tytuł:
BOSC 2022: the first hybrid and 23rd annual Bioinformatics Open Source Conference.
Autorzy:
Harris NL; Lawrence Berkeley National Laboratory, Berkeley, CA, 94720, USA.
Hokamp K; Smurfit Institute of Genetics, Trinity College Dublin, Dublin, Ireland.
Ménager H; Institut Pasteur, Paris, France.
Munoz-Torres M; University of Colorado Anschutz Medical Campus, Aurora, CO, USA.
Unni D; Swiss Institute of Bioinformatics, Basel, Switzerland.
Vasilevsky N; University of Colorado Anschutz Medical Campus, Aurora, CO, USA.
Williams J; Cold Spring Harbor Laboratory, Cold Spring Harbor, NY, USA.
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Źródło:
F1000Research [F1000Res] 2022 Sep 12; Vol. 11, pp. 1034. Date of Electronic Publication: 2022 Sep 12 (Print Publication: 2022).
Typ publikacji:
Editorial
MeSH Terms:
Computational Biology*
Systems Biology*
Congresses as Topic ; Humans
Opinia redakcyjna
Tytuł:
More is different with a vengeance.
Autorzy:
Stumpf MPH; Melbourne Integrative Genomics, University of Melbourne, Australia; School of BioScience, University of Melbourne, Australia; School of Mathematics and Statistics, University of Melbourne, Australia. Electronic address: .
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Źródło:
Cell systems [Cell Syst] 2022 Aug 17; Vol. 13 (8), pp. 594-597.
Typ publikacji:
Journal Article
MeSH Terms:
Systems Biology*
Humans ; Male
Czasopismo naukowe
Tytuł:
A comprehensive review on genomics, systems biology and structural biology approaches for combating antimicrobial resistance in ESKAPE pathogens: computational tools and recent advancements.
Autorzy:
Priyamvada P; Medical and Biological Computing Laboratory, School of Biosciences and Technology (SBST), Vellore Institute of Technology (VIT), 632014, Vellore, India.; Department of Bio-Sciences, SBST, VIT, 632014, Vellore, India.
Debroy R; Medical and Biological Computing Laboratory, School of Biosciences and Technology (SBST), Vellore Institute of Technology (VIT), 632014, Vellore, India.; Department of Bio-Medical Sciences, SBST, VIT, 632014, Vellore, India.
Anbarasu A; Medical and Biological Computing Laboratory, School of Biosciences and Technology (SBST), Vellore Institute of Technology (VIT), 632014, Vellore, India.; Department of Biotechnology, SBST, VIT, 632014, Vellore, India.
Ramaiah S; Medical and Biological Computing Laboratory, School of Biosciences and Technology (SBST), Vellore Institute of Technology (VIT), 632014, Vellore, India. .; Department of Bio-Sciences, SBST, VIT, 632014, Vellore, India. .; School of Biosciences and Technology VIT, 632014, Vellore, Tamil Nadu, India. .
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Źródło:
World journal of microbiology & biotechnology [World J Microbiol Biotechnol] 2022 Jul 05; Vol. 38 (9), pp. 153. Date of Electronic Publication: 2022 Jul 05.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Anti-Bacterial Agents*/pharmacology
Systems Biology*
Computational Biology ; Drug Resistance, Bacterial/genetics ; Genomics
Czasopismo naukowe
Tytuł:
Attenuation of low-grade chronic inflammation by phytonutrients: A computational systems biology analysis.
Autorzy:
Ayyadurai VAS; Systems Biology Group, CytoSolve Research Division, CytoSolve, Inc., Cambridge, MA, USA. Electronic address: .
Deonikar P; Systems Biology Group, CytoSolve Research Division, CytoSolve, Inc., Cambridge, MA, USA.
Bannuru RR; Center for Treatment Comparison and Integrative Analysis (CTCIA), Division of Rheumatology, Tufts Medical Center, Boston, MA, USA.
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Źródło:
Clinical nutrition ESPEN [Clin Nutr ESPEN] 2022 Jun; Vol. 49, pp. 425-435. Date of Electronic Publication: 2022 Mar 31.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Systems Biology*
Tumor Necrosis Factor-alpha*
Humans ; Inflammation/etiology ; Phytochemicals/pharmacology ; Powders ; Reactive Oxygen Species/metabolism ; Vegetables/metabolism
Czasopismo naukowe
Tytuł:
Automated, high-dimensional evaluation of physiological aging and resilience in outbred mice.
Autorzy:
Chen Z; Calico Life Sciences LLC, South San Francisco, South San Francisco, United States.
Raj A; Calico Life Sciences LLC, South San Francisco, South San Francisco, United States.
Prateek GV; Calico Life Sciences LLC, South San Francisco, South San Francisco, United States.
Di Francesco A; Calico Life Sciences LLC, South San Francisco, South San Francisco, United States.
Liu J; Calico Life Sciences LLC, South San Francisco, South San Francisco, United States.
Keyes BE; Calico Life Sciences LLC, South San Francisco, South San Francisco, United States.
Kolumam G; Calico Life Sciences LLC, South San Francisco, South San Francisco, United States.
Jojic V; Calico Life Sciences LLC, South San Francisco, South San Francisco, United States.
Freund A; Calico Life Sciences LLC, South San Francisco, South San Francisco, United States.
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Źródło:
ELife [Elife] 2022 Apr 11; Vol. 11. Date of Electronic Publication: 2022 Apr 11.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Aging*/physiology
Systems Biology*
Animals ; Mice ; Phenotype
Czasopismo naukowe
Tytuł:
Laboratory evolution of synthetic electron transport system variants reveals a larger metabolic respiratory system and its plasticity.
Autorzy:
Anand A; Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA. .; Department of Biological Sciences, Tata Institute of Fundamental Research, Mumbai, Maharashtra, India. .
Patel A; Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA.
Chen K; Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA.
Olson CA; Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA.
Phaneuf PV; Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA.
Lamoureux C; Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA.
Hefner Y; Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA.
Szubin R; Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA.
Feist AM; Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA.; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet, Kongens, Lyngby, Denmark.
Palsson BO; Department of Bioengineering, University of California, San Diego, La Jolla, CA, USA. .; Novo Nordisk Foundation Center for Biosustainability, Technical University of Denmark, Kemitorvet, Kongens, Lyngby, Denmark. .
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Źródło:
Nature communications [Nat Commun] 2022 Jun 27; Vol. 13 (1), pp. 3682. Date of Electronic Publication: 2022 Jun 27.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural
MeSH Terms:
Escherichia coli*/metabolism
Systems Biology*
Electron Transport/genetics ; Proteome/metabolism ; Respiratory System
Czasopismo naukowe
Tytuł:
Quantifying biochemical reaction rates from static population variability within incompletely observed complex networks.
Autorzy:
Wittenstein T; Department of Physics, University of Toronto, Ontario, Canada.; Department of Physics, Johannes Gutenberg University Mainz, Mainz, Germany.
Leibovich N; Department of Physics, University of Toronto, Ontario, Canada.
Hilfinger A; Department of Physics, University of Toronto, Ontario, Canada.; Department of Mathematics, University of Toronto, Toronto, Ontario, Canada.; Department of Cell & Systems Biology, University of Toronto, Toronto, Ontario, Canada.; Department of Chemical & Physical Sciences, University of Toronto Mississauga, Mississauga, Ontario, Canada.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2022 Jun 22; Vol. 18 (6), pp. e1010183. Date of Electronic Publication: 2022 Jun 22 (Print Publication: 2022).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Models, Biological*
Systems Biology*
Cell Physiological Phenomena ; Models, Statistical ; Stochastic Processes
Czasopismo naukowe
Tytuł:
Model-checking ecological state-transition graphs.
Autorzy:
Thomas C; IBISC, Univ. Évry, Univ. Paris-Saclay, 91020 Évry-Courcouronne, France.; AMAP, Univ. Montpellier, INRAE, CIRAD, CNRS, IRD, Montpellier, France.
Cosme M; AMAP, Univ. Montpellier, INRAE, CIRAD, CNRS, IRD, Montpellier, France.
Gaucherel C; AMAP, Univ. Montpellier, INRAE, CIRAD, CNRS, IRD, Montpellier, France.
Pommereau F; IBISC, Univ. Évry, Univ. Paris-Saclay, 91020 Évry-Courcouronne, France.
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Źródło:
PLoS computational biology [PLoS Comput Biol] 2022 Jun 06; Vol. 18 (6), pp. e1009657. Date of Electronic Publication: 2022 Jun 06 (Print Publication: 2022).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Ecosystem*
Systems Biology*
Logic ; Models, Theoretical ; Problem Solving
Czasopismo naukowe
Tytuł:
Toolboxes for plant systems biology research.
Autorzy:
Park J; School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA.
Demirer GS; Department of Plant Biology and Genome Center, University of California Davis, Davis, CA 95616, USA; Department of Chemical Engineering, California Institute of Technology, Pasadena, CA 91125, USA.
Cheung LS; School of Chemical and Biomolecular Engineering, Georgia Institute of Technology, Atlanta, GA 30332, USA. Electronic address: .
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Źródło:
Current opinion in biotechnology [Curr Opin Biotechnol] 2022 Jun; Vol. 75, pp. 102692. Date of Electronic Publication: 2022 Feb 07.
Typ publikacji:
Journal Article; Review; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't
MeSH Terms:
Plants*/genetics
Systems Biology*/methods
Gene Regulatory Networks ; Plant Development ; Synthetic Biology/methods
Czasopismo naukowe

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