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Wyświetlanie 1-20 z 807
Tytuł:
ICON-GEMs: integration of co-expression network in genome-scale metabolic models, shedding light through systems biology.
Autorzy:
Paklao T; Advanced Virtual and Intelligent Computing (AVIC) Center, Department of Mathematics and Computer Science, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand.
Suratanee A; Department of Mathematics, Faculty of Applied Science, King Mongkut's University of Technology North Bangkok, Bangkok, 10800, Thailand.
Plaimas K; Advanced Virtual and Intelligent Computing (AVIC) Center, Department of Mathematics and Computer Science, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand. .; Omics Sciences and Bioinformatics Center, Faculty of Science, Chulalongkorn University, Bangkok, 10330, Thailand. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2023 Dec 21; Vol. 24 (1), pp. 492. Date of Electronic Publication: 2023 Dec 21.
Typ publikacji:
Journal Article
MeSH Terms:
Proteomics*
Systems Biology*
Genome ; Metabolic Engineering ; Gene Expression Profiling ; Escherichia coli/genetics ; Escherichia coli/metabolism ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae/metabolism ; Models, Biological ; Metabolic Networks and Pathways/genetics ; Metabolic Flux Analysis/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
SBMLKinetics: a tool for annotation-independent classification of reaction kinetics for SBML models.
Autorzy:
Xu J; Department of Bioengineering, University of Washington, Seattle, USA. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2023 Jun 13; Vol. 24 (1), pp. 248. Date of Electronic Publication: 2023 Jun 13.
Typ publikacji:
Journal Article
MeSH Terms:
Signal Transduction*
Systems Biology*
Kinetics ; Probability
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
The 'un-shrunk' partial correlation in Gaussian graphical models.
Autorzy:
Bernal V; Bernoulli Institute, University of Groningen, Groningen, 9747 AG, The Netherlands.; Department of Analytical Biochemistry, Groningen Research Institute of Pharmacy, University of Groningen, Groningen, 9713 AV, The Netherlands.
Bischoff R; Department of Analytical Biochemistry, Groningen Research Institute of Pharmacy, University of Groningen, Groningen, 9713 AV, The Netherlands.
Horvatovich P; Department of Analytical Biochemistry, Groningen Research Institute of Pharmacy, University of Groningen, Groningen, 9713 AV, The Netherlands. .
Guryev V; European Research Institute for the Biology of Ageing, University Medical Center Groningen, University of Groningen, Groningen, 9713 AV, The Netherlands. .
Grzegorczyk M; Bernoulli Institute, University of Groningen, Groningen, 9747 AG, The Netherlands. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2021 Sep 07; Vol. 22 (1), pp. 424. Date of Electronic Publication: 2021 Sep 07.
Typ publikacji:
Journal Article
MeSH Terms:
Systems Biology*
Animals ; Mice ; Normal Distribution
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Kernelized multiview signed graph learning for single-cell RNA sequencing data.
Autorzy:
Karaaslanli A; Department of Electrical and Computer Engineering, Michigan State University, East Lansing, MI, USA. .
Saha S; Department of Biostatistics, The University of Texas MD Anderson Cancer Center, Houston, TX, USA.
Maiti T; Department of Statistics and Probability, Michigan State University, East Lansing, MI, USA.
Aviyente S; Department of Electrical and Computer Engineering, Michigan State University, East Lansing, MI, USA.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2023 Apr 04; Vol. 24 (1), pp. 127. Date of Electronic Publication: 2023 Apr 04.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Neoplasms*
Animals ; Mice ; Systems Biology ; Sequence Analysis, RNA ; Algorithms
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
ImmunoGlobe: enabling systems immunology with a manually curated intercellular immune interaction network.
Autorzy:
Atallah MB; Canary Center at Stanford, Department of Radiology, Stanford University School of Medicine, Stanford, CA, USA.
Tandon V; Stanford University, Stanford, CA, USA.
Hiam KJ; Departments of Otolaryngology and Microbiology & Immunology, Helen Diller Family Comprehensive Cancer Center, Parker Institute for Cancer Immunotherapy, Chan Zuckerberg Biohub, University of California, San Francisco, CA, USA.
Boyce H; Canary Center at Stanford, Department of Radiology, Stanford University School of Medicine, Stanford, CA, USA.
Hori M; Canary Center at Stanford, Department of Radiology, Stanford University School of Medicine, Stanford, CA, USA.
Atallah W; Canary Center at Stanford, Department of Radiology, Stanford University School of Medicine, Stanford, CA, USA.
Spitzer MH; Departments of Otolaryngology and Microbiology & Immunology, Helen Diller Family Comprehensive Cancer Center, Parker Institute for Cancer Immunotherapy, Chan Zuckerberg Biohub, University of California, San Francisco, CA, USA.
Engleman E; Department of Pathology, Stanford University School of Medicine, Stanford, CA, USA.
Mallick P; Canary Center at Stanford, Department of Radiology, Stanford University School of Medicine, Stanford, CA, USA. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2020 Aug 10; Vol. 21 (1), pp. 346. Date of Electronic Publication: 2020 Aug 10.
Typ publikacji:
Journal Article
MeSH Terms:
Cell Communication*
Data Curation*
Protein Interaction Maps*
Software*
Systems Biology*
Extracellular Space/*metabolism
Immune System/*metabolism
Animals ; Humans ; Mice ; Models, Immunological
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Reconstructing gene regulatory networks of biological function using differential equations of multilayer perceptrons.
Autorzy:
Mao G; Science and Technology on Parallel and Distributed Processing Laboratory, National University of Defense Technology, Deya Road, Changsha, 410073, China.
Zeng R; Science and Technology on Parallel and Distributed Processing Laboratory, National University of Defense Technology, Deya Road, Changsha, 410073, China.
Peng J; Science and Technology on Parallel and Distributed Processing Laboratory, National University of Defense Technology, Deya Road, Changsha, 410073, China.
Zuo K; Science and Technology on Parallel and Distributed Processing Laboratory, National University of Defense Technology, Deya Road, Changsha, 410073, China.
Pang Z; Science and Technology on Parallel and Distributed Processing Laboratory, National University of Defense Technology, Deya Road, Changsha, 410073, China.
Liu J; Science and Technology on Parallel and Distributed Processing Laboratory, National University of Defense Technology, Deya Road, Changsha, 410073, China. .; Laboratory of Software Engineering for Complex System, National University of Defense Technology, Deya Road, Changsha, 410073, China. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2022 Nov 24; Vol. 23 (1), pp. 503. Date of Electronic Publication: 2022 Nov 24.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Regulatory Networks*
Algorithms*
Neural Networks, Computer ; Systems Biology ; Linear Models
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Using empirical biological knowledge to infer regulatory networks from multi-omics data.
Autorzy:
Pačínková A; RECETOX, Faculty of Science, Masaryk University, Kotlarska 2, Brno, Czech Republic. .; Faculty of Informatics, Masaryk University, Botanicka 68a, Brno, Czech Republic. .
Popovici V; RECETOX, Faculty of Science, Masaryk University, Kotlarska 2, Brno, Czech Republic.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2022 Aug 22; Vol. 23 (1), pp. 351. Date of Electronic Publication: 2022 Aug 22.
Typ publikacji:
Journal Article
MeSH Terms:
Colonic Neoplasms*
DNA Copy Number Variations*
Algorithms ; Bayes Theorem ; Gene Regulatory Networks ; Humans ; Systems Biology/methods
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Data and knowledge management in translational research: implementation of the eTRIKS platform for the IMI OncoTrack consortium.
Autorzy:
Gu W; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg.
Yildirimman R; Alacris Theranostics GmbH, Berlin, Germany.
Van der Stuyft E; Janssen Pharmaceutica NV, Beerse, Belgium.
Verbeeck D; Janssen Pharmaceutica NV, Beerse, Belgium.
Herzinger S; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg.
Satagopam V; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg.
Barbosa-Silva A; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg.
Schneider R; Luxembourg Centre for Systems Biomedicine, University of Luxembourg, Esch-sur-Alzette, Luxembourg.
Lange B; Alacris Theranostics GmbH, Berlin, Germany.
Lehrach H; Alacris Theranostics GmbH, Berlin, Germany.; Max Planck Institute for Molecular Genetics, Berlin, Germany.; Dahlem Centre for Genome Research and Medical Systems Biology, Berlin, Germany.
Guo Y; Data Science Institute, Imperial College London, London, UK.
Henderson D; Bayer AG, Berlin, Germany. .
Rowe A; Janssen Research and Development Ltd, High Wycombe, UK. .
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Corporate Authors:
IMI OncoTrack and the IMI eTRIKS consortia
Źródło:
BMC bioinformatics [BMC Bioinformatics] 2019 Apr 01; Vol. 20 (1), pp. 164. Date of Electronic Publication: 2019 Apr 01.
Typ publikacji:
Journal Article
MeSH Terms:
Databases, Factual*
Knowledge Management*
Systems Biology*
Translational Research, Biomedical/*methods
Animals ; Cells, Cultured ; Computer Simulation ; Disease Models, Animal ; Humans ; Models, Biological ; Proteomics ; Software ; Whole Genome Sequencing ; Xenograft Model Antitumor Assays
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Boolean factor graph model for biological systems: the yeast cell-cycle network.
Autorzy:
Kotiang S; Department of Electrical Engineering and Computer Science, Wichita State University, Wichita, KS, 67260, USA.
Eslami A; Department of Electrical Engineering and Computer Science, Wichita State University, Wichita, KS, 67260, USA. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2021 Sep 17; Vol. 22 (1), pp. 442. Date of Electronic Publication: 2021 Sep 17.
Typ publikacji:
Journal Article
MeSH Terms:
Models, Genetic*
Saccharomyces cerevisiae*/genetics
Algorithms ; Cell Cycle/genetics ; Gene Regulatory Networks ; Models, Biological ; Systems Biology
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
Integrative analysis and machine learning on cancer genomics data using the Cancer Systems Biology Database (CancerSysDB).
Autorzy:
Krempel R; Regional Computing Center of the University of Cologne (RRZK), Cologne, Germany.
Kulkarni P; Bioinformatics Facility, CECAD Research Center, University of Cologne, Cologne, Germany.
Yim A; Institut de Biologie du Développement, Aix-Marseille University, Marseille, France.; Max Planck Institute for Biochemistry, Martinsried, Germany.
Lang U; Regional Computing Center of the University of Cologne (RRZK), Cologne, Germany.
Habermann B; Institut de Biologie du Développement, Aix-Marseille University, Marseille, France.; Max Planck Institute for Biochemistry, Martinsried, Germany.
Frommolt P; Bioinformatics Facility, CECAD Research Center, University of Cologne, Cologne, Germany. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2018 Apr 24; Vol. 19 (1), pp. 156. Date of Electronic Publication: 2018 Apr 24.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Databases, Factual*
Machine Learning*
Software*
Systems Biology*
Genomics/*methods
Neoplasms/*genetics
Exome ; Humans
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
LinkedImm: a linked data graph database for integrating immunological data.
Autorzy:
Bukhari SAC; Division of Computer Science, Mathematics and Science, Collins College of Professional Studies, St. John's University, New York, NY, USA.
Pawar S; Department of Genetics, Yale School of Medicine, New Haven, CT, USA.
Mandell J; Program in Computational Biology and Bioinformatics, Yale School of Medicine, New Haven, CT, USA.
Kleinstein SH; Program in Computational Biology and Bioinformatics, Yale School of Medicine, New Haven, CT, USA.; Department of Pathology, Yale School of Medicine, New Haven, CT, USA.
Cheung KH; Program in Computational Biology and Bioinformatics, Yale School of Medicine, New Haven, CT, USA. .; Department of Emergency Medicine, Yale School of Medicine, New Haven, CT, USA. .; Yale Center for Medical Informatics, Yale School of Medicine, New Haven, CT, USA. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2021 Aug 25; Vol. 22 (Suppl 9), pp. 105. Date of Electronic Publication: 2021 Aug 25.
Typ publikacji:
Journal Article
MeSH Terms:
Information Storage and Retrieval*
Semantic Web*
Databases, Factual ; Language ; Systems Biology
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Constructing and analysing dynamic models with modelbase v1.2.3: a software update.
Autorzy:
van Aalst M; Institute of Quantitative and Theoretical Biology, Heinrich Heine University, Universitätsstr. 1, 40225, Düsseldorf, Germany.
Ebenhöh O; Institute of Quantitative and Theoretical Biology, Heinrich Heine University, Universitätsstr. 1, 40225, Düsseldorf, Germany.; CEPLAS - Cluster of Excellence on Plant Sciences, Universitätsstr. 1, 40225, Düsseldorf, Germany.
Matuszyńska A; Institute of Quantitative and Theoretical Biology, Heinrich Heine University, Universitätsstr. 1, 40225, Düsseldorf, Germany. .; CEPLAS - Cluster of Excellence on Plant Sciences, Universitätsstr. 1, 40225, Düsseldorf, Germany. .
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2021 Apr 20; Vol. 22 (1), pp. 203. Date of Electronic Publication: 2021 Apr 20.
Typ publikacji:
Journal Article
MeSH Terms:
Models, Biological*
Programming Languages*
Computer Simulation ; Software ; Systems Biology
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknieSzczegóły
Tytuł:
PhyloSophos: a high-throughput scientific name mapping algorithm augmented with explicit consideration of taxonomic science, and its application on natural product (NP) occurrence database processing.
Autorzy:
Cho, Min Hyung
Cho, Kwang-Hwi
No, Kyoung Tai
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Temat:
DATABASES
NATURAL products
INFORMATION resources
PYTHON programming language
SYSTEMS biology
DATA integration
Źródło:
BMC Bioinformatics; 12/14/2023, Vol. 24 Issue 1, p1-25, 25p
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
CANTARE: finding and visualizing network-based multi-omic predictive models.
Autorzy:
Siebert JC; Department of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA. .
Saint-Cyr M; Department of Pediatrics, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.
Borengasser SJ; Department of Pediatrics, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.
Wagner BD; Department of Biostatistics and Informatics, Colorado School of Public Health, Aurora, CO, USA.
Lozupone CA; Department of Medicine, University of Colorado Anschutz Medical Campus, Aurora, CO, USA.
Görg C; Department of Biostatistics and Informatics, Colorado School of Public Health, Aurora, CO, USA.
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Źródło:
BMC bioinformatics [BMC Bioinformatics] 2021 Feb 19; Vol. 22 (1), pp. 80. Date of Electronic Publication: 2021 Feb 19.
Typ publikacji:
Journal Article
MeSH Terms:
Gastrointestinal Microbiome*
Humans ; Metabolomics ; Regression Analysis ; Software ; Systems Biology
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
An oscillating reaction network with an exact closed form solution in the time domain
Autorzy:
Joseph Hellerstein
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Temat:
Systems biology
Computer applications to medicine. Medical informatics
R858-859.7
Biology (General)
QH301-705.5
Źródło:
BMC Bioinformatics, Vol 24, Iss 1, Pp 1-22 (2023)
Opis pliku:
electronic resource
Relacje:
https://doaj.org/toc/1471-2105
Dostęp URL:
https://doaj.org/article/f965af340a5c4eb6a0fae71c739a8924  Link otwiera się w nowym oknie
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Wyświetlanie 1-20 z 807

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