Identification and Characterization of Small RNA Markers of Age in the Blow Fly Cochliomyia macellaria (Fabricius) (Diptera: Calliphoridae).
Autorzy:
Hjelmen CE; Department of Biology, Utah Valley University, Orem, UT 84058, USA.; Department of Entomology, Texas A&M University, College Station, TX 77843, USA. Yuan Y; Department of Computer Science and Engineering, Texas A&M University, College Station, TX 77843, USA. Parrott JJ; Department of Entomology, Texas A&M University, College Station, TX 77843, USA.; School of Mathematical and Natural Sciences, Arizona State University, Glendale, AZ 85306, USA. McGuane AS; Department of Entomology, Texas A&M University, College Station, TX 77843, USA. Srivastav SP; Department of Entomology, Texas A&M University, College Station, TX 77843, USA.; Department of Molecular Biology and Genetics, Cornell University, Ithaca, NY 14853, USA. Purcell AC; Centre for Forensic Science, Department of Pure and Applied Chemistry, University of Strathclyde, Glasgow G1 1XQ, UK. Pimsler ML; Department of Entomology, Texas A&M University, College Station, TX 77843, USA. Sze SH; Department of Computer Science and Engineering, Texas A&M University, College Station, TX 77843, USA.; Department of Biochemistry and Biophysics, Texas A&M University, College Station, TX 77843, USA. TaroneAM; Department of Entomology, Texas A&M University, College Station, TX 77843, USA.
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Źródło:
Insects [Insects] 2022 Oct 18; Vol. 13 (10). Date of Electronic Publication: 2022 Oct 18.
Gene expression in Lucilia sericata (Diptera: Calliphoridae) larvae exposed to Pseudomonas aeruginosa and Acinetobacter baumannii identifies shared and microbe-specific induction of immune genes.
Autorzy:
McKenna CH; Department of Entomology, Texas A&M University, College Station, TX, USA. Asgari D; Department of Biology and Biochemistry, University of Houston, Houston, TX, USA. Crippen TL; Southern Plains Agricultural Research Center, Agricultural Research Service, US Department of Agriculture, College Station, TX, USA. Zheng L; Department of Entomology, Texas A&M University, College Station, TX, USA. Sherman RA; BioTherapeutics, Education and Research (BTER) Foundation, Irvine, CA, USA.; Monarch Labs, Irvine, CA, USA. Tomberlin JK; Department of Entomology, Texas A&M University, College Station, TX, USA. Meisel RP; Department of Biology and Biochemistry, University of Houston, Houston, TX, USA. TaroneAM; Department of Entomology, Texas A&M University, College Station, TX, USA.
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Źródło:
Insect molecular biology [Insect Mol Biol] 2022 Feb; Vol. 31 (1), pp. 85-100. Date of Electronic Publication: 2021 Oct 17.
The discrepancy between fire ant recruitment to and performance on rodent carrion.
Autorzy:
Lin C; Department of Entomology, Texas A&M University, Minnie Belle Heep, 2475 TAMU, College Station, TX, 77843-2475, USA. . TaroneAM; Department of Entomology, Texas A&M University, Minnie Belle Heep, 2475 TAMU, College Station, TX, 77843-2475, USA. Eubanks MD; Department of Entomology, Texas A&M University, Minnie Belle Heep, 2475 TAMU, College Station, TX, 77843-2475, USA.
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Źródło:
Scientific reports [Sci Rep] 2022 Jan 07; Vol. 12 (1), pp. 71. Date of Electronic Publication: 2022 Jan 07.
Typ publikacji:
Comparative Study; Journal Article; Research Support, Non-U.S. Gov't
Publisher Correction: The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control.
Autorzy:
Olafson PU; Livestock Arthropod Pests Research Unit, USDA-ARS, Kerrville, TX, USA. . Aksoy S; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA. Attardo GM; Department of Entomology and Nematology, University of California - Davis, Davis, CA, USA. Buckmeier G; Livestock Arthropod Pests Research Unit, USDA-ARS, Kerrville, TX, USA. Chen X; The Center for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA. Coates CJ; Department of Entomology, Texas A & M University, College Station, TX, USA. Davis M; Livestock Arthropod Pests Research Unit, USDA-ARS, Kerrville, TX, USA. Dykema J; Department of Biological Sciences, Wayne State University, Detroit, MI, USA. Emrich SJ; Department of Electrical Engineering & Computer Science, University of Tennessee, Knoxville, TN, USA. Friedrich M; Department of Biological Sciences, Wayne State University, Detroit, MI, USA. Holmes CJ; Department of Biological Sciences, University of Cincinnati, Cincinnati, OH, USA. Ioannidis P; Department of Genetic Medicine and Development, University of Geneva Medical School and Swiss Institute of Bioinformatics, 1211, Geneva, Switzerland. Jansen EN; Department of Biological Sciences, University of Cincinnati, Cincinnati, OH, USA. Jennings EC; Department of Biological Sciences, University of Cincinnati, Cincinnati, OH, USA. Lawson D; The European Molecular Biology Laboratory, The European Bioinformatics Institute, The Wellcome Genome Campus, Hinxton, CB10 1SD, UK. Martinson EO; Department of Entomology, University of Georgia, Athens, GA, USA. Maslen GL; The European Molecular Biology Laboratory, The European Bioinformatics Institute, The Wellcome Genome Campus, Hinxton, CB10 1SD, UK. Meisel RP; Department of Biology and Biochemistry, University of Houston, Houston, TX, USA. Murphy TD; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA. Nayduch D; Arthropod-borne Animal Diseases Research Unit, USDA-ARS, Manhattan, KS, USA. Nelson DR; Department of Microbiology, Immunology and Biochemistry, University of Tennessee Health Science Center, Memphis, TN, USA. Oyen KJ; Department of Biological Sciences, University of Cincinnati, Cincinnati, OH, USA. Raszick TJ; Department of Entomology, Texas A & M University, College Station, TX, USA. Ribeiro JMC; Section of Vector Biology, Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, Rockville, MD, USA. Robertson HM; Department of Entomology, University of Illinois at Urbana-Champaign, Urbana, IL, USA. Rosendale AJ; Department of Biology, Mount St. Joseph University, Cincinnati, OH, USA. Sackton TB; Informatics Group, Faculty of Arts and Sciences, Harvard University, Cambridge, MA, USA. Saelao P; Livestock Arthropod Pests Research Unit, USDA-ARS, Kerrville, TX, USA. Swiger SL; Department of Entomology, Texas A&M AgriLife Research and Extension Center, Stephenville, TX, USA. Sze SH; Department of Computer Science & Engineering, Department of Biochemistry & Biophysics, Texas A & M University, College Station, TX, USA. TaroneAM; Department of Entomology, Texas A & M University, College Station, TX, USA. Taylor DB; Agroecosystem Management Research Unit, USDA-ARS, Lincoln, NE, USA. Warren WC; University of Missouri, Bond Life Sciences Center, Columbia, MO, USA. Waterhouse RM; Department of Ecology and Evolution, University of Lausanne, and Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland. Weirauch MT; Center for Autoimmune Genomics and Etiology, Divisions of Biomedical Informatics and Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, USA. Werren JH; Department of Biology, University of Rochester, Rochester, NY, USA. Wilson RK; Institute for Genomic Medicine, Nationwide Children's Hospital, Columbus, OH, USA.; College of Medicine, Ohio State University, Columbus, OH, USA. Zdobnov EM; Department of Genetic Medicine and Development, University of Geneva Medical School and Swiss Institute of Bioinformatics, 1211, Geneva, Switzerland. Benoit JB; Department of Biological Sciences, University of Cincinnati, Cincinnati, OH, USA. .
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Źródło:
BMC biology [BMC Biol] 2021 Jul 29; Vol. 19 (1), pp. 150. Date of Electronic Publication: 2021 Jul 29.
The genome of the stable fly, Stomoxys calcitrans, reveals potential mechanisms underlying reproduction, host interactions, and novel targets for pest control.
Autorzy:
Olafson PU; Livestock Arthropod Pests Research Unit, USDA-ARS, Kerrville, TX, USA. . Aksoy S; Department of Epidemiology of Microbial Diseases, Yale School of Public Health, New Haven, CT, USA. Attardo GM; Department of Entomology and Nematology, University of California - Davis, Davis, CA, USA. Buckmeier G; Livestock Arthropod Pests Research Unit, USDA-ARS, Kerrville, TX, USA. Chen X; The Center for Autoimmune Genomics and Etiology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA. Coates CJ; Department of Entomology, Texas A & M University, College Station, TX, USA. Davis M; Livestock Arthropod Pests Research Unit, USDA-ARS, Kerrville, TX, USA. Dykema J; Department of Biological Sciences, Wayne State University, Detroit, MI, USA. Emrich SJ; Department of Electrical Engineering & Computer Science, University of Tennessee, Knoxville, TN, USA. Friedrich M; Department of Biological Sciences, Wayne State University, Detroit, MI, USA. Holmes CJ; Department of Biological Sciences, University of Cincinnati, Cincinnati, OH, USA. Ioannidis P; Department of Genetic Medicine and Development, University of Geneva Medical School and Swiss Institute of Bioinformatics, 1211, Geneva, Switzerland. Jansen EN; Department of Biological Sciences, University of Cincinnati, Cincinnati, OH, USA. Jennings EC; Department of Biological Sciences, University of Cincinnati, Cincinnati, OH, USA. Lawson D; The European Molecular Biology Laboratory, The European Bioinformatics Institute, The Wellcome Genome Campus, Hinxton, CB10 1SD, UK. Martinson EO; Department of Entomology, University of Georgia, Athens, GA, USA. Maslen GL; The European Molecular Biology Laboratory, The European Bioinformatics Institute, The Wellcome Genome Campus, Hinxton, CB10 1SD, UK. Meisel RP; Department of Biology and Biochemistry, University of Houston, Houston, TX, USA. Murphy TD; National Center for Biotechnology Information, National Library of Medicine, National Institutes of Health, Bethesda, MD, USA. Nayduch D; Arthropod-borne Animal Diseases Research Unit, USDA-ARS, Manhattan, KS, USA. Nelson DR; Department of Microbiology, Immunology and Biochemistry, University of Tennessee Health Science Center, Memphis, TN, USA. Oyen KJ; Department of Biological Sciences, University of Cincinnati, Cincinnati, OH, USA. Raszick TJ; Department of Entomology, Texas A & M University, College Station, TX, USA. Ribeiro JMC; Section of Vector Biology, Laboratory of Malaria and Vector Research, National Institute of Allergy and Infectious Diseases, Rockville, MD, USA. Robertson HM; Department of Entomology, University of Illinois at Urbana-Champaign, Urbana, IL, USA. Rosendale AJ; Department of Biology, Mount St. Joseph University, Cincinnati, OH, USA. Sackton TB; Informatics Group, Faculty of Arts and Sciences, Harvard University, Cambridge, MA, USA. Saelao P; Livestock Arthropod Pests Research Unit, USDA-ARS, Kerrville, TX, USA. Swiger SL; Department of Entomology, Texas A&M AgriLife Research and Extension Center, Stephenville, TX, USA. Sze SH; Department of Computer Science & Engineering, Department of Biochemistry & Biophysics, Texas A & M University, College Station, TX, USA. TaroneAM; Department of Entomology, Texas A & M University, College Station, TX, USA. Taylor DB; Agroecosystem Management Research Unit, USDA-ARS, Lincoln, NE, USA. Warren WC; University of Missouri, Bond Life Sciences Center, Columbia, MO, USA. Waterhouse RM; Department of Ecology and Evolution, University of Lausanne, and Swiss Institute of Bioinformatics, 1015, Lausanne, Switzerland. Weirauch MT; Center for Autoimmune Genomics and Etiology, Divisions of Biomedical Informatics and Developmental Biology, Cincinnati Children's Hospital Medical Center, Cincinnati, OH, USA.; Department of Pediatrics, University of Cincinnati College of Medicine, Cincinnati, OH, USA. Werren JH; Department of Biology, University of Rochester, Rochester, NY, USA. Wilson RK; Institute for Genomic Medicine, Nationwide Children's Hospital, Columbus, OH, USA.; College of Medicine, Ohio State University, Columbus, OH, USA. Zdobnov EM; Department of Genetic Medicine and Development, University of Geneva Medical School and Swiss Institute of Bioinformatics, 1211, Geneva, Switzerland. Benoit JB; Department of Biological Sciences, University of Cincinnati, Cincinnati, OH, USA. .
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Źródło:
BMC biology [BMC Biol] 2021 Mar 10; Vol. 19 (1), pp. 41. Date of Electronic Publication: 2021 Mar 10.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
The genomes of a monogenic fly: views of primitive sex chromosomes.
Autorzy:
Andere AA; Department of Biology, Indiana University- Purdue University Indianapolis, Indianapolis, IN, USA. Pimsler ML; Department of Biological Sciences, The University of Alabama, Tuscaloosa, AL, USA. TaroneAM; Department of Entomology, Texas A&M University, College Station, TX, USA. Picard CJ; Department of Biology, Indiana University- Purdue University Indianapolis, Indianapolis, IN, USA. .
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Źródło:
Scientific reports [Sci Rep] 2020 Sep 25; Vol. 10 (1), pp. 15728. Date of Electronic Publication: 2020 Sep 25.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
Suppressing tawny crazy ant (Nylanderia fulva) by RNAi technology.
Autorzy:
Meng J; College of Plant Protection, Fujian Agricultural and Forestry University, Fuzhou, Fujian, China.; Department of Entomology, Texas A&M University, College Station, Texas, USA.; Institute for Plant Genomics & Biotechnology, Texas A&M University, College Station, Texas, USA. Lei J; Department of Entomology, Texas A&M University, College Station, Texas, USA.; Institute for Plant Genomics & Biotechnology, Texas A&M University, College Station, Texas, USA. Davitt A; Department of Entomology, Texas A&M University, College Station, Texas, USA. Holt JR; Department of Entomology, Texas A&M University, College Station, Texas, USA. Huang J; College of Plant Protection, Fujian Agricultural and Forestry University, Fuzhou, Fujian, China. Gold R; Department of Entomology, Texas A&M University, College Station, Texas, USA. Vargo EL; Department of Entomology, Texas A&M University, College Station, Texas, USA. TaroneAM; Department of Entomology, Texas A&M University, College Station, Texas, USA. Zhu-Salzman K; Department of Entomology, Texas A&M University, College Station, Texas, USA.; Institute for Plant Genomics & Biotechnology, Texas A&M University, College Station, Texas, USA.
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Źródło:
Insect science [Insect Sci] 2020 Feb; Vol. 27 (1), pp. 113-121. Date of Electronic Publication: 2018 Jun 28.
Identifying similar transcripts in a related organism from de Bruijn graphs of RNA-Seq data, with applications to the study of salt and waterlogging tolerance in Melilotus.
Autorzy:
Fu S; Department of Biochemistry & Biophysics, Texas A&M University, College Station, 77843, TX, USA. Chang PL; Molecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, 90089, CA, USA. Friesen ML; Molecular and Computational Biology Section, Department of Biological Sciences, University of Southern California, Los Angeles, 90089, CA, USA.; Department of Crop and Soil Sciences, Washington State University, Pullman, 99164, WA, USA.; Department of Plant Pathology, Washington State University, Pullman, 99164, WA, USA. Teakle NL; Centre for Ecohydrology, The University of Western Australia, 35 Stirling Highway, Crawley, 6009, WA, Australia.; School of Plant Biology (M084), Faculty of Natural and Agricultural Sciences, The University of Western Australia, 35 Stirling Highway, Crawley, 6009, WA, Australia. TaroneAM; Department of Entomology, Texas A&M University, College Station, 77843, TX, USA. Sze SH; Department of Biochemistry & Biophysics, Texas A&M University, College Station, 77843, TX, USA. .; Department of Computer Science and Engineering, Texas A&M University, College Station, 77843, TX, USA. .
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Źródło:
BMC genomics [BMC Genomics] 2019 Jun 06; Vol. 20 (Suppl 5), pp. 425. Date of Electronic Publication: 2019 Jun 06.
Machine learning performance in a microbial molecular autopsy context: A cross-sectional postmortem human population study.
Autorzy:
Zhang Y; Texas A&M University, Department of Computer Science and Engineering, College Station, TX, United States of America. Pechal JL; Michigan State University, Department of Entomology, East Lansing, MI, United States of America. Schmidt CJ; Wayne County Medical Examiner's Office, Detroit, MI, United States of America.; University of Michigan, Department of Pathology, Ann Arbor, MI, United States of America. Jordan HR; Mississippi State University, Department of Biological Sciences, Mississippi State, MS, United States of America. Wang WW; Texas A&M University, Department of Chemistry, College Station, TX, United States of America. Benbow ME; Michigan State University, Department of Entomology, East Lansing, MI, United States of America.; Michigan State University, Department of Osteopathic Medical Specialties, East Lansing, MI, United States of America.; Michigan State University, Ecology, Evolutionary Biology, and Behavior Program, East Lansing, MI, United States of America. Sze SH; Texas A&M University, Department of Computer Science and Engineering, College Station, TX, United States of America.; Texas A&M University, Department of Biochemistry and Biophysics, College Station, TX, United States of America. TaroneAM; Texas A&M University, Department of Entomology, College Station, TX, United States of America.
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Źródło:
PloS one [PLoS One] 2019 Apr 15; Vol. 14 (4), pp. e0213829. Date of Electronic Publication: 2019 Apr 15 (Print Publication: 2019).
Typ publikacji:
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
A divide-and-conquer algorithm for large-scale de novo transcriptome assembly through combining small assemblies from existing algorithms.
Autorzy:
Sze SH; Department of Computer Science and Engineering, Texas A&M University, College Station, Mexico, 77843, TX, USA. .; Department of Biochemistry & Biophysics, Texas A&M University, College Station, Mexico, 77843, TX, USA. . Parrott JJ; Department of Entomology, Texas A&M University, College Station, Mexico, 77843, TX, USA. TaroneAM; Department of Entomology, Texas A&M University, College Station, Mexico, 77843, TX, USA.
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Źródło:
BMC genomics [BMC Genomics] 2017 Dec 06; Vol. 18 (Suppl 10), pp. 895. Date of Electronic Publication: 2017 Dec 06.
A scalable and memory-efficient algorithm for de novo transcriptome assembly of non-model organisms.
Autorzy:
Sze SH; Department of Computer Science and Engineering, Texas A&M University, College Station, 77843, TX, USA. .; Department of Biochemistry & Biophysics, Texas A&M University, College Station, 77843, TX, USA. . Pimsler ML; Department of Entomology, Texas A&M University, College Station, 77843, TX, USA. Tomberlin JK; Department of Entomology, Texas A&M University, College Station, 77843, TX, USA. Jones CD; Department of Biology, University of North Carolina at Chapel Hill, Chapel Hill, NC 27599, USA. TaroneAM; Department of Entomology, Texas A&M University, College Station, 77843, TX, USA.
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Źródło:
BMC genomics [BMC Genomics] 2017 May 24; Vol. 18 (Suppl 4), pp. 387. Date of Electronic Publication: 2017 May 24.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
Human Thanatomicrobiome Succession and Time Since Death.
Autorzy:
Javan GT; Forensic Science Program, Physical Sciences Department, Alabama State University, Montgomery, AL 36104 USA. Finley SJ; Ph.D. Program in Microbiology, Department of Biological Sciences, Alabama State University, Montgomery, AL 36104 USA. Can I; Forensic Science Program, Physical Sciences Department, Alabama State University, Montgomery, AL 36104 USA. Wilkinson JE; Research and Testing Laboratory, Lubbock, TX 79407 USA. Hanson JD; Research and Testing Laboratory, Lubbock, TX 79407 USA. TaroneAM; Department of Entomology, Texas A&M University, College Station, TX, 77843 USA.
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Źródło:
Scientific reports [Sci Rep] 2016 Jul 14; Vol. 6, pp. 29598. Date of Electronic Publication: 2016 Jul 14.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
Functional characterization of calliphorid cell death genes and cellularization gene promoters for controlling gene expression and cell viability in early embryos.
Intrapopulation genome size variation in D. melanogaster reflects life history variation and plasticity.
Autorzy:
Ellis LL; Department of Entomology, Texas A&M University, College Station, Texas, United States of America. Huang W; Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, United States of America. Quinn AM; Department of Entomology, Texas A&M University, College Station, Texas, United States of America; University of Texas Health Science Center, Houston, Texas, United States of America. Ahuja A; Baylor Human Genome Sequencing Center, Houston, Texas, United States of America. Alfrejd B; Department of Entomology, Texas A&M University, College Station, Texas, United States of America. Gomez FE; Department of Soil and Crop Science, Texas A&M University, College Station, Texas, United States of America. Hjelmen CE; Department of Entomology, Texas A&M University, College Station, Texas, United States of America. Moore KL; Department of Entomology, Texas A&M University, College Station, Texas, United States of America. Mackay TF; Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, United States of America. Johnston JS; Department of Entomology, Texas A&M University, College Station, Texas, United States of America. TaroneAM; Department of Entomology, Texas A&M University, College Station, Texas, United States of America.
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Źródło:
PLoS genetics [PLoS Genet] 2014 Jul 24; Vol. 10 (7), pp. e1004522. Date of Electronic Publication: 2014 Jul 24 (Print Publication: 2014).
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