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Wyszukujesz frazę ""Transcription, Genetic"" wg kryterium: Temat


Tytuł :
LncRNA LOXL1-AS1 is transcriptionally activated by JUND and contributes to osteoarthritis progression via targeting the miR-423-5p/KDM5C axis.
Autorzy :
Chen K; Department of Orthopaedics, Shanghai Eighth People's Hospital, 14th Floor, Building2, No.8 Caobao Road, Xuhui District, Shanghai 200235, China. Electronic address: .
Fang H; Department of Orthopaedics, Shanghai Eighth People's Hospital, 14th Floor, Building2, No.8 Caobao Road, Xuhui District, Shanghai 200235, China.
Xu N; Department of Orthopaedics, Shanghai Eighth People's Hospital, 14th Floor, Building2, No.8 Caobao Road, Xuhui District, Shanghai 200235, China.
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Źródło :
Life sciences [Life Sci] 2020 Oct 01; Vol. 258, pp. 118095. Date of Electronic Publication: 2020 Jul 14.
Typ publikacji :
Journal Article
Journal Info :
Publisher: Elsevier Country of Publication: Netherlands NLM ID: 0375521 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1879-0631 (Electronic) Linking ISSN: 00243205 NLM ISO Abbreviation: Life Sci. Subsets: MEDLINE
MeSH Terms :
Signal Transduction*
Transcription, Genetic*
Histone Demethylases/*metabolism
MicroRNAs/*metabolism
Osteoarthritis/*genetics
Proto-Oncogene Proteins c-jun/*metabolism
RNA, Long Noncoding/*metabolism
Apoptosis/genetics ; Base Sequence ; Cell Proliferation/genetics ; Chondrocytes/metabolism ; Chondrocytes/pathology ; Disease Progression ; Gene Silencing ; Histone Demethylases/genetics ; Humans ; Inflammation/genetics ; Inflammation/pathology ; MicroRNAs/genetics ; Osteoarthritis/pathology ; RNA, Long Noncoding/genetics
Czasopismo naukowe
Tytuł :
Stress fiber anisotropy contributes to force-mode dependent chromatin stretching and gene upregulation in living cells.
Autorzy :
Wei F; Laboratory for Cellular Biomechanics and Regenerative Medicine, Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, 430074, Hubei, China. .
Xu X; Department of Applied Mechanics, Beijing Institute of Technology, 100081, Beijing, China.
Zhang C; Laboratory for Cellular Biomechanics and Regenerative Medicine, Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, 430074, Hubei, China.
Liao Y; Laboratory for Cellular Biomechanics and Regenerative Medicine, Department of Biomedical Engineering, College of Life Science and Technology, Huazhong University of Science and Technology, Wuhan, 430074, Hubei, China.
Ji B; Biomechanics and Biomaterials Laboratory, Department of Engineering Mechanics, Zhejiang University, Hangzhou, 310027, Zhejiang, China. .
Wang N; Department of Mechanical Science and Engineering, The Grainger College of Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, 61801, USA. .
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Źródło :
Nature communications [Nat Commun] 2020 Sep 29; Vol. 11 (1), pp. 4902. Date of Electronic Publication: 2020 Sep 29.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
MeSH Terms :
Chromatin/*chemistry
Stress Fibers/*chemistry
Tetrahydrofolate Dehydrogenase/*genetics
Transcription, Genetic/*physiology
Up-Regulation/*physiology
Animals ; Anisotropy ; Biomechanical Phenomena/genetics ; CHO Cells ; Chromatin/metabolism ; Cricetulus ; Heterocyclic Compounds, 4 or More Rings/pharmacology ; Intravital Microscopy ; Microscopy, Fluorescence ; Myosin Type II/antagonists & inhibitors ; Myosin Type II/metabolism ; Stress Fibers/drug effects ; Stress Fibers/metabolism ; Stress, Mechanical ; Transcription, Genetic/drug effects ; Up-Regulation/drug effects
Czasopismo naukowe
Tytuł :
The C. elegans GATA transcription factor elt-2 mediates distinct transcriptional responses and opposite infection outcomes towards different Bacillus thuringiensis strains.
Autorzy :
Zárate-Potes A; Department of Evolutionary Ecology and Genetics, Christian-Albrechts-Universität zu Kiel, Kiel, Germany.
Yang W; Department of Evolutionary Ecology and Genetics, Christian-Albrechts-Universität zu Kiel, Kiel, Germany.
Pees B; Department of Evolutionary Ecology and Genetics, Christian-Albrechts-Universität zu Kiel, Kiel, Germany.
Schalkowski R; Department of Evolutionary Ecology and Genetics, Christian-Albrechts-Universität zu Kiel, Kiel, Germany.
Segler P; Department of Evolutionary Ecology and Genetics, Christian-Albrechts-Universität zu Kiel, Kiel, Germany.
Andresen B; Department of Evolutionary Ecology and Genetics, Christian-Albrechts-Universität zu Kiel, Kiel, Germany.
Haase D; Department of Evolutionary Ecology and Genetics, Christian-Albrechts-Universität zu Kiel, Kiel, Germany.
Nakad R; Department of Evolutionary Ecology and Genetics, Christian-Albrechts-Universität zu Kiel, Kiel, Germany.
Rosenstiel P; Institute for Clinical Molecular Biology (IKMB), Christian-Albrechts-Universität zu Kiel, Kiel, Germany.
Tetreau G; Univ. Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale, Grenoble, France.
Colletier JP; Univ. Grenoble Alpes, CNRS, CEA, Institut de Biologie Structurale, Grenoble, France.
Schulenburg H; Department of Evolutionary Ecology and Genetics, Christian-Albrechts-Universität zu Kiel, Kiel, Germany.; Max Planck Institute for Evolutionary Biology, Ploen, Germany.
Dierking K; Department of Evolutionary Ecology and Genetics, Christian-Albrechts-Universität zu Kiel, Kiel, Germany.
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Źródło :
PLoS pathogens [PLoS Pathog] 2020 Sep 24; Vol. 16 (9), pp. e1008826. Date of Electronic Publication: 2020 Sep 24 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238921 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7374 (Electronic) Linking ISSN: 15537366 NLM ISO Abbreviation: PLoS Pathog Subsets: MEDLINE
MeSH Terms :
MAP Kinase Signaling System*
Transcription, Genetic*
Bacillus thuringiensis/*metabolism
Bacterial Infections/*metabolism
Caenorhabditis elegans/*metabolism
Caenorhabditis elegans Proteins/*metabolism
GATA Transcription Factors/*metabolism
Animals ; Bacillus thuringiensis/pathogenicity ; Bacterial Infections/genetics ; Bacterial Infections/microbiology ; Caenorhabditis elegans/genetics ; Caenorhabditis elegans/microbiology ; Caenorhabditis elegans Proteins/genetics ; GATA Transcription Factors/genetics
Czasopismo naukowe
Tytuł :
Genome-wide CRISPR knockout screen identifies ZNF304 as a silencer of HIV transcription that promotes viral latency.
Autorzy :
Krasnopolsky S; The Shraga Segal Department of Microbiology Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Kuzmina A; The Shraga Segal Department of Microbiology Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel.
Taube R; The Shraga Segal Department of Microbiology Immunology and Genetics, Faculty of Health Sciences, Ben-Gurion University of the Negev, Beer-Sheva, Israel.
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Źródło :
PLoS pathogens [PLoS Pathog] 2020 Sep 21; Vol. 16 (9), pp. e1008834. Date of Electronic Publication: 2020 Sep 21 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238921 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7374 (Electronic) Linking ISSN: 15537366 NLM ISO Abbreviation: PLoS Pathog Subsets: MEDLINE
MeSH Terms :
Gene Expression Regulation, Viral*
Gene Silencing*
Repressor Proteins*/genetics
Repressor Proteins*/metabolism
Transcription Factors*/genetics
Transcription Factors*/metabolism
Transcription, Genetic*
Virus Latency*
CD4-Positive T-Lymphocytes/*metabolism
HIV-1/*physiology
CD4-Positive T-Lymphocytes/virology ; CRISPR-Cas Systems ; Gene Knockout Techniques ; Genome-Wide Association Study ; Humans ; Jurkat Cells ; Promoter Regions, Genetic ; Tripartite Motif-Containing Protein 28/genetics ; Tripartite Motif-Containing Protein 28/metabolism
Czasopismo naukowe
Tytuł :
NC2 complex is a key factor for the activation of catalase-3 transcription by regulating H2A.Z deposition.
Autorzy :
Cui G; State Key Laboratory of Agrobiotechnology and MOA Key Laboratory of Soil Microbiology, College of Biological Sciences, China Agricultural University, Beijing 100193, China.
Dong Q; State Key Laboratory of Agrobiotechnology and MOA Key Laboratory of Soil Microbiology, College of Biological Sciences, China Agricultural University, Beijing 100193, China.
Duan J; State Key Laboratory of Agrobiotechnology and MOA Key Laboratory of Soil Microbiology, College of Biological Sciences, China Agricultural University, Beijing 100193, China.
Zhang C; State Key Laboratory of Agrobiotechnology and MOA Key Laboratory of Soil Microbiology, College of Biological Sciences, China Agricultural University, Beijing 100193, China.
Liu X; State Key Laboratory of Mycology, Institute of Microbiology, Chinese Academy of Sciences, Beijing 100101, China.; College of Life Sciences, University of the Chinese Academy of Sciences, Beijing 100049, China.
He Q; State Key Laboratory of Agrobiotechnology and MOA Key Laboratory of Soil Microbiology, College of Biological Sciences, China Agricultural University, Beijing 100193, China.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Sep 04; Vol. 48 (15), pp. 8332-8348.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE
MeSH Terms :
Transcription, Genetic*
Catalase/*genetics
Phosphoproteins/*genetics
Transcription Factors/*genetics
Cell Nucleus/genetics ; Chromatin Assembly and Disassembly/genetics ; Gene Expression Regulation/genetics ; Genes, MHC Class II/genetics ; Histones/genetics ; Neurospora crassa/genetics ; Nucleosomes/genetics ; Nucleosomes/ultrastructure ; Phosphoproteins/ultrastructure ; Protein Binding/genetics ; Transcription Factors/ultrastructure ; Transcriptional Activation/genetics
Czasopismo naukowe
Tytuł :
Chromatin remodeler Ino80C acts independently of H2A.Z to evict promoter nucleosomes and stimulate transcription of highly expressed genes in yeast.
Autorzy :
Qiu H; Division of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Biernat E; Department of Biological Sciences, Oakland University, Rochester, MI 48309, USA.
Govind CK; Department of Biological Sciences, Oakland University, Rochester, MI 48309, USA.
Rawal Y; Division of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Chereji RV; Division of Developmental Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Clark DJ; Division of Developmental Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
Hinnebusch AG; Division of Molecular and Cellular Biology, Eunice Kennedy Shriver National Institute of Child Health and Human Development, National Institutes of Health, Bethesda, MD 20892, USA.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Sep 04; Vol. 48 (15), pp. 8408-8430.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE
MeSH Terms :
Transcription, Genetic*
Histones/*genetics
Saccharomyces cerevisiae Proteins/*genetics
Transcriptional Activation/*genetics
Adenosine Triphosphatases/genetics ; Chromatin/genetics ; Chromatin Assembly and Disassembly/genetics ; DNA-Binding Proteins/genetics ; Gene Expression Regulation, Fungal/genetics ; Nucleosomes/genetics ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae Proteins/chemistry ; Transcription Factors/genetics
Czasopismo naukowe
Tytuł :
Embryonic tissue differentiation is characterized by transitions in cell cycle dynamic-associated core promoter regulation.
Autorzy :
Wragg JW; Institute of Cancer and Genomic Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham, B15 2TT, UK.
Roos L; Institute of Clinical Sciences and MRC Clinical Sciences Centre, Faculty of Medicine, Imperial College London, London, W12 0NN, UK.
Vucenovic D; Institute of Clinical Sciences and MRC Clinical Sciences Centre, Faculty of Medicine, Imperial College London, London, W12 0NN, UK.
Cvetesic N; Institute of Clinical Sciences and MRC Clinical Sciences Centre, Faculty of Medicine, Imperial College London, London, W12 0NN, UK.
Lenhard B; Institute of Clinical Sciences and MRC Clinical Sciences Centre, Faculty of Medicine, Imperial College London, London, W12 0NN, UK.
Müller F; Institute of Cancer and Genomic Sciences, College of Medical and Dental Sciences, University of Birmingham, Birmingham, B15 2TT, UK.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Sep 04; Vol. 48 (15), pp. 8374-8392.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE
MeSH Terms :
Transcription Initiation Site*
Transcription, Genetic*
Gene Regulatory Networks/*genetics
Promoter Regions, Genetic/*genetics
Animals ; Binding Sites/genetics ; Cell Cycle/genetics ; Cell Differentiation/genetics ; Cell Proliferation/genetics ; Embryonic Development/genetics ; Humans ; Morphogenesis/genetics ; Sp1 Transcription Factor/genetics ; TATA Box/genetics ; Zebrafish/genetics
Czasopismo naukowe
Tytuł :
Transcription of intragenic CpG islands influences spatiotemporal host gene pre-mRNA processing.
Autorzy :
Amante SM; Department of Medical and Molecular Genetics, King's College London, Guy's Hospital, London SE1 9RT, UK.
Montibus B; Department of Medical and Molecular Genetics, King's College London, Guy's Hospital, London SE1 9RT, UK.
Cowley M; Department of Medical and Molecular Genetics, King's College London, Guy's Hospital, London SE1 9RT, UK.
Barkas N; Department of Medical and Molecular Genetics, King's College London, Guy's Hospital, London SE1 9RT, UK.
Setiadi J; Department of Medical and Molecular Genetics, King's College London, Guy's Hospital, London SE1 9RT, UK.
Saadeh H; Department of Medical and Molecular Genetics, King's College London, Guy's Hospital, London SE1 9RT, UK.
Giemza J; Department of Medical and Molecular Genetics, King's College London, Guy's Hospital, London SE1 9RT, UK.
Contreras-Castillo S; Department of Medical and Molecular Genetics, King's College London, Guy's Hospital, London SE1 9RT, UK.
Fleischanderl K; Department of Medical and Molecular Genetics, King's College London, Guy's Hospital, London SE1 9RT, UK.
Schulz R; Department of Medical and Molecular Genetics, King's College London, Guy's Hospital, London SE1 9RT, UK.
Oakey RJ; Department of Medical and Molecular Genetics, King's College London, Guy's Hospital, London SE1 9RT, UK.
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Źródło :
Nucleic acids research [Nucleic Acids Res] 2020 Sep 04; Vol. 48 (15), pp. 8349-8359.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Oxford University Press Country of Publication: England NLM ID: 0411011 Publication Model: Print Cited Medium: Internet ISSN: 1362-4962 (Electronic) Linking ISSN: 03051048 NLM ISO Abbreviation: Nucleic Acids Res Subsets: MEDLINE
MeSH Terms :
Epigenesis, Genetic*
Transcription, Genetic*
Protein Processing, Post-Translational/*genetics
RNA Precursors/*genetics
Animals ; Cell Differentiation/genetics ; Chromatin/genetics ; CpG Islands/genetics ; DNA Methylation/genetics ; Genome/genetics ; Histone Code/genetics ; Humans ; Promoter Regions, Genetic ; Pseudogenes/genetics ; RNA Precursors/metabolism
Czasopismo naukowe
Tytuł :
Phosphorylation controls RNA binding and transcription by the influenza virus polymerase.
Autorzy :
Dawson AR; Department of Medical Microbiology & Immunology, University of Wisconsin-Madison, Madison, WI, United States of America.
Wilson GM; Department of Chemistry, University of Wisconsin-Madison, Madison, WI, United States of America.
Freiberger EC; Department of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI, United States of America.
Mondal A; Department of Medical Microbiology & Immunology, University of Wisconsin-Madison, Madison, WI, United States of America.
Coon JJ; Department of Chemistry, University of Wisconsin-Madison, Madison, WI, United States of America.; Department of Biomolecular Chemistry, University of Wisconsin-Madison, Madison, WI, United States of America.
Mehle A; Department of Medical Microbiology & Immunology, University of Wisconsin-Madison, Madison, WI, United States of America.
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Źródło :
PLoS pathogens [PLoS Pathog] 2020 Sep 03; Vol. 16 (9), pp. e1008841. Date of Electronic Publication: 2020 Sep 03 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Public Library of Science Country of Publication: United States NLM ID: 101238921 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7374 (Electronic) Linking ISSN: 15537366 NLM ISO Abbreviation: PLoS Pathog Subsets: MEDLINE
MeSH Terms :
Transcription, Genetic*
Virus Replication*
Influenza A virus/*physiology
RNA, Viral/*biosynthesis
Viral Proteins/*metabolism
A549 Cells ; Animals ; Dogs ; HEK293 Cells ; Humans ; Madin Darby Canine Kidney Cells ; Phosphorylation ; RNA, Viral/genetics ; Viral Proteins/genetics
Czasopismo naukowe
Tytuł :
Identification of the human DPR core promoter element using machine learning.
Autorzy :
Vo Ngoc L; Section of Molecular Biology, University of California, San Diego, La Jolla, CA, USA.
Huang CY; Section of Molecular Biology, University of California, San Diego, La Jolla, CA, USA.
Cassidy CJ; Section of Molecular Biology, University of California, San Diego, La Jolla, CA, USA.
Medrano C; Section of Molecular Biology, University of California, San Diego, La Jolla, CA, USA.
Kadonaga JT; Section of Molecular Biology, University of California, San Diego, La Jolla, CA, USA. .
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Źródło :
Nature [Nature] 2020 Sep; Vol. 585 (7825), pp. 459-463. Date of Electronic Publication: 2020 Sep 09.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE
MeSH Terms :
Support Vector Machine*
Transcription, Genetic*
Consensus Sequence/*genetics
Gene Expression Regulation/*genetics
Promoter Regions, Genetic/*genetics
RNA Polymerase II/*metabolism
Base Sequence ; Cells/metabolism ; Computer Simulation ; Datasets as Topic ; HeLa Cells ; High-Throughput Nucleotide Sequencing ; Humans ; Models, Genetic ; Mutagenesis ; TATA Box/genetics
Czasopismo naukowe
Tytuł :
A Practicable Method of Tuning the Noise Intensity at Protein Level.
Autorzy :
Lo SC; Department of Chemical Engineering and Biotechnology, National Taipei University of Technology, Taipei City, Taiwan.
You CX; Department of Chemical Engineering and Biotechnology, National Taipei University of Technology, Taipei City, Taiwan.
Shu CC; Department of Chemical Engineering and Biotechnology, National Taipei University of Technology, Taipei City, Taiwan.
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Źródło :
Journal of computational biology : a journal of computational molecular cell biology [J Comput Biol] 2020 Sep; Vol. 27 (9), pp. 1452-1460. Date of Electronic Publication: 2020 Feb 14.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Mary Ann Liebert, Inc Country of Publication: United States NLM ID: 9433358 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1557-8666 (Electronic) Linking ISSN: 10665277 Subsets: MEDLINE
MeSH Terms :
Models, Theoretical*
Protein Biosynthesis*
Transcription, Genetic*
Animals ; Humans ; MicroRNAs/genetics ; MicroRNAs/metabolism ; Signal-To-Noise Ratio ; Stochastic Processes
Czasopismo naukowe
Tytuł :
Functionally uncoupled transcription-translation in Bacillus subtilis.
Autorzy :
Johnson GE; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Lalanne JB; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.; Department of Physics, Massachusetts Institute of Technology, Cambridge, MA, USA.
Peters ML; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA.
Li GW; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA, USA. .
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Źródło :
Nature [Nature] 2020 Sep; Vol. 585 (7823), pp. 124-128. Date of Electronic Publication: 2020 Aug 26.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
Journal Info :
Publisher: Nature Publishing Group Country of Publication: England NLM ID: 0410462 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1476-4687 (Electronic) Linking ISSN: 00280836 NLM ISO Abbreviation: Nature Subsets: MEDLINE
MeSH Terms :
Gene Expression Regulation, Bacterial*
Protein Biosynthesis*
Transcription, Genetic*
Bacillus subtilis/*genetics
5' Untranslated Regions/genetics ; Bacillus subtilis/enzymology ; Bacillus subtilis/metabolism ; DNA-Directed RNA Polymerases/metabolism ; Phylogeny ; RNA, Bacterial/biosynthesis ; RNA, Bacterial/metabolism ; RNA, Messenger/biosynthesis ; RNA, Messenger/metabolism ; RNA-Binding Proteins/metabolism ; Rho Factor/metabolism ; Ribosomes/metabolism ; Riboswitch/genetics
Czasopismo naukowe
Tytuł :
The roles of replication-transcription conflict in mutagenesis and evolution of genome organization.
Autorzy :
Schroeder JW; Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
Sankar TS; School of Biology, Indian Institute of Science Education and Research Thiruvananthapuram, Thiruvananthapuram, Kerala, India.
Wang JD; Department of Bacteriology, University of Wisconsin-Madison, Madison, Wisconsin, United States of America.
Simmons LA; Department of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, Michigan, United States of America.
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Źródło :
PLoS genetics [PLoS Genet] 2020 Aug 27; Vol. 16 (8), pp. e1008987. Date of Electronic Publication: 2020 Aug 27 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Review
Journal Info :
Publisher: Public Library of Science Country of Publication: United States NLM ID: 101239074 Publication Model: eCollection Cited Medium: Internet ISSN: 1553-7404 (Electronic) Linking ISSN: 15537390 NLM ISO Abbreviation: PLoS Genet Subsets: MEDLINE
MeSH Terms :
Evolution, Molecular*
Transcription, Genetic*
DNA Replication/*genetics
Selection, Genetic/*genetics
Bacteria/genetics ; Genome, Bacterial/genetics
Czasopismo naukowe
Tytuł :
Topoisomerase 1 prevents replication stress at R-loop-enriched transcription termination sites.
Autorzy :
Promonet A; Institut de Génétique Humaine, CNRS et Université de Montpellier, Equipe labélisée Ligue contre le Cancer, Montpellier, France.
Padioleau I; Institut de Génétique Humaine, CNRS et Université de Montpellier, Equipe labélisée Ligue contre le Cancer, Montpellier, France.; Institut Gustave Roussy, Villejuif, France.
Liu Y; Institut Curie, PSL Research University, CNRS, UMR3244, Sorbonne Université, Paris, France.
Sanz L; Department of Molecular and Cellular Biology, University of California, Davis, CA, 95616, USA.
Biernacka A; Laboratory of Bioinformatics and Systems Biology, Centre of New Technologies, University of Warsaw, Warsaw, Poland.
Schmitz AL; Institut de Génétique Humaine, CNRS et Université de Montpellier, Equipe labélisée Ligue contre le Cancer, Montpellier, France.
Skrzypczak M; Laboratory of Bioinformatics and Systems Biology, Centre of New Technologies, University of Warsaw, Warsaw, Poland.
Sarrazin A; BioCampus Montpellier, CNRS et Université de Montpellier, Montpellier, France.
Mettling C; Institut de Génétique Humaine, CNRS et Université de Montpellier, Montpellier, France.
Rowicka M; Department of Biochemistry and Molecular Biology, University of Texas Medical Branch at Galveston, Galveston, TX, USA.
Ginalski K; Laboratory of Bioinformatics and Systems Biology, Centre of New Technologies, University of Warsaw, Warsaw, Poland.
Chedin F; Department of Molecular and Cellular Biology, University of California, Davis, CA, 95616, USA.
Chen CL; Institut Curie, PSL Research University, CNRS, UMR3244, Sorbonne Université, Paris, France. .
Lin YL; Institut de Génétique Humaine, CNRS et Université de Montpellier, Equipe labélisée Ligue contre le Cancer, Montpellier, France. .
Pasero P; Institut de Génétique Humaine, CNRS et Université de Montpellier, Equipe labélisée Ligue contre le Cancer, Montpellier, France. .
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Źródło :
Nature communications [Nat Commun] 2020 Aug 07; Vol. 11 (1), pp. 3940. Date of Electronic Publication: 2020 Aug 07.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
MeSH Terms :
DNA Replication*
Transcription, Genetic*
DNA Topoisomerases, Type I/*metabolism
R-Loop Structures/*genetics
Terminator Regions, Genetic/*genetics
Ataxia Telangiectasia Mutated Proteins/metabolism ; DNA Breaks, Double-Stranded ; DNA Topoisomerases, Type I/genetics ; Gene Knockdown Techniques ; Genomic Instability ; HEK293 Cells ; HeLa Cells ; Humans ; Phosphorylation ; Promoter Regions, Genetic ; RNA, Small Interfering/metabolism
Czasopismo naukowe
Tytuł :
Primary Role of the Nucleosome.
Autorzy :
Kornberg RD; Department of Structural Biology, Stanford School of Medicine, Stanford, CA 94305, USA.
Lorch Y; Department of Structural Biology, Stanford School of Medicine, Stanford, CA 94305, USA. Electronic address: .
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Źródło :
Molecular cell [Mol Cell] 2020 Aug 06; Vol. 79 (3), pp. 371-375.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Review
Journal Info :
Publisher: Cell Press Country of Publication: United States NLM ID: 9802571 Publication Model: Print Cited Medium: Internet ISSN: 1097-4164 (Electronic) Linking ISSN: 10972765 NLM ISO Abbreviation: Mol. Cell Subsets: MEDLINE
MeSH Terms :
Transcription, Genetic*
Chromosomal Proteins, Non-Histone/*genetics
Nucleosomes/*metabolism
RNA Polymerase II/*genetics
Saccharomyces cerevisiae/*genetics
Transcription Factors/*genetics
Animals ; Binding Sites ; Chromatin Assembly and Disassembly ; Chromosomal Proteins, Non-Histone/metabolism ; Evolution, Molecular ; Gene Expression Regulation ; Histones/genetics ; Histones/metabolism ; Humans ; Nucleosomes/ultrastructure ; Promoter Regions, Genetic ; RNA Polymerase II/metabolism ; Saccharomyces cerevisiae/metabolism ; Transcription Factors/metabolism
Czasopismo naukowe
Tytuł :
Identification of Noncanonical Transcripts Produced by Systematic Nucleotide Exchanges in HIV-Associated Centroblastic Lymphoma.
Autorzy :
Warthi G; IRD, APHM, Aix Marseille Univ, SSA, VITROME, IHU-Méditerranée Infection, Marseille, France.; IHU-Méditerranée Infection, Marseille, France.
Fournier PE; IRD, APHM, Aix Marseille Univ, SSA, VITROME, IHU-Méditerranée Infection, Marseille, France.; IHU-Méditerranée Infection, Marseille, France.
Seligmann H; The National Natural History Collections, The Hebrew University of Jerusalem, Jerusalem, Israel.
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Źródło :
DNA and cell biology [DNA Cell Biol] 2020 Aug; Vol. 39 (8), pp. 1444-1448. Date of Electronic Publication: 2019 Nov 21.
Typ publikacji :
Journal Article
Journal Info :
Publisher: Mary Ann Liebert Country of Publication: United States NLM ID: 9004522 Publication Model: Print-Electronic Cited Medium: Internet ISSN: 1557-7430 (Electronic) Linking ISSN: 10445498 NLM ISO Abbreviation: DNA Cell Biol. Subsets: MEDLINE
MeSH Terms :
Transcription, Genetic*
HIV Infections/*genetics
Lymphoma, Non-Hodgkin/*genetics
Mitochondria/*genetics
DNA Replication/genetics ; DNA, Mitochondrial/genetics ; Genome, Mitochondrial/genetics ; HIV/genetics ; HIV/pathogenicity ; HIV Infections/complications ; HIV Infections/virology ; Humans ; Lymphoma, Non-Hodgkin/complications ; Lymphoma, Non-Hodgkin/virology ; Mitochondria/virology ; Nucleotides/genetics
Czasopismo naukowe
Tytuł :
In-cell architecture of an actively transcribing-translating expressome.
Autorzy :
O'Reilly FJ; Bioanalytics Unit, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany.
Xue L; Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany.; Collaboration for joint PhD degree between EMBL and Heidelberg University, Faculty of Biosciences, 69120 Heidelberg, Germany.
Graziadei A; Bioanalytics Unit, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany.
Sinn L; Bioanalytics Unit, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany.
Lenz S; Bioanalytics Unit, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany.
Tegunov D; Department of Molecular Biology, Max-Planck-Institute for Biophysical Chemistry, 37077 Göttingen, Germany.
Blötz C; Department of General Microbiology, Institute of Microbiology and Genetics, GZMB, Georg-August-University Göttingen, 37077 Göttingen, Germany.
Singh N; Department of General Microbiology, Institute of Microbiology and Genetics, GZMB, Georg-August-University Göttingen, 37077 Göttingen, Germany.
Hagen WJH; Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany.
Cramer P; Department of Molecular Biology, Max-Planck-Institute for Biophysical Chemistry, 37077 Göttingen, Germany.
Stülke J; Department of General Microbiology, Institute of Microbiology and Genetics, GZMB, Georg-August-University Göttingen, 37077 Göttingen, Germany.
Mahamid J; Structural and Computational Biology Unit, European Molecular Biology Laboratory (EMBL), 69117 Heidelberg, Germany. .
Rappsilber J; Bioanalytics Unit, Institute of Biotechnology, Technische Universität Berlin, 13355 Berlin, Germany. .; Wellcome Centre for Cell Biology, University of Edinburgh, Edinburgh, EH9 3BF, UK.
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Źródło :
Science (New York, N.Y.) [Science] 2020 Jul 31; Vol. 369 (6503), pp. 554-557.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: American Association for the Advancement of Science Country of Publication: United States NLM ID: 0404511 Publication Model: Print Cited Medium: Internet ISSN: 1095-9203 (Electronic) Linking ISSN: 00368075 NLM ISO Abbreviation: Science Subsets: MEDLINE
MeSH Terms :
Peptide Chain Elongation, Translational*
Protein Interaction Maps*
Transcription, Genetic*
Mycoplasma pneumoniae/*metabolism
Mycoplasma pneumoniae/*ultrastructure
Bacterial Proteins/metabolism ; DNA-Directed RNA Polymerases/metabolism ; Genome, Bacterial ; Humans ; Mycoplasma pneumoniae/genetics ; Peptide Elongation Factors/metabolism ; Ribosomes/metabolism ; Transcriptome
Czasopismo naukowe
Tytuł :
Transcriptional activity and strain-specific history of mouse pseudogenes.
Autorzy :
Sisu C; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, 06520, USA.; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 06520, USA.; Department of Life Sciences, Brunel University London, London, UB8 3PH, UK.
Muir P; Department of Molecular, Cellular & Developmental Biology, Yale University, New Haven, CT, 06520, USA.; Systems Biology Institute, Yale University, West Haven, CT, 06516, USA.
Frankish A; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
Fiddes I; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, 95064, USA.
Diekhans M; UC Santa Cruz Genomics Institute, University of California, Santa Cruz, CA, 95064, USA.
Thybert D; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.; Earlham Institute, Norwich Research Park, Norwich, NR4 7UH, UK.
Odom DT; University of Cambridge, Cancer Research UK Cambridge Institute, Robinson Way, Cambridge, CB2 0RE, UK.; Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.
Flicek P; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.; Wellcome Trust Sanger Institute, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SA, UK.
Keane TM; European Molecular Biology Laboratory, European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
Hubbard T; Department of Medical and Molecular Genetics, King's College London, London, SE1 9RT, UK.
Harrow J; Elexir, Wellcome Trust Genome Campus, Hinxton, Cambridge, CB10 1SD, UK.
Gerstein M; Program in Computational Biology and Bioinformatics, Yale University, New Haven, CT, 06520, USA. .; Department of Molecular Biophysics and Biochemistry, Yale University, New Haven, CT, 06520, USA. .; Systems Biology Institute, Yale University, West Haven, CT, 06516, USA. .; Department of Computer Science, Yale University, New Haven, CT, 06520, USA. .; Department of Statistics & Data Science, Yale University, New Haven, CT, 06520, USA. .
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Źródło :
Nature communications [Nat Commun] 2020 Jul 29; Vol. 11 (1), pp. 3695. Date of Electronic Publication: 2020 Jul 29.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
MeSH Terms :
Transcription, Genetic*
Pseudogenes/*genetics
Animals ; Conserved Sequence/genetics ; Evolution, Molecular ; Gene Ontology ; Genome ; Humans ; Mice, Inbred C57BL ; Molecular Sequence Annotation ; Species Specificity
Czasopismo naukowe
Tytuł :
Molecular determinants for dsDNA translocation by the transcription-repair coupling and evolvability factor Mfd.
Autorzy :
Brugger C; Department of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, RI, 02903, USA.
Zhang C; Laboratory of Genetics, The Salk Institute for Biological Studies, La Jolla, CA, 92093, USA.
Suhanovsky MM; Department of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, RI, 02903, USA.
Kim DD; Department of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, RI, 02903, USA.
Sinclair AN; Department of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, RI, 02903, USA.
Lyumkis D; Laboratory of Genetics, The Salk Institute for Biological Studies, La Jolla, CA, 92093, USA.; Department of Computational and Structural Biology, The Scripps Research Institute, La Jolla, CA, 92093, USA.
Deaconescu AM; Department of Molecular Biology, Cell Biology and Biochemistry, Brown University, Providence, RI, 02903, USA. .
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Źródło :
Nature communications [Nat Commun] 2020 Jul 27; Vol. 11 (1), pp. 3740. Date of Electronic Publication: 2020 Jul 27.
Typ publikacji :
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Nature Pub. Group Country of Publication: England NLM ID: 101528555 Publication Model: Electronic Cited Medium: Internet ISSN: 2041-1723 (Electronic) Linking ISSN: 20411723 NLM ISO Abbreviation: Nat Commun Subsets: MEDLINE
MeSH Terms :
DNA Repair*
Transcription, Genetic*
Bacterial Proteins/*metabolism
DNA/*metabolism
Transcription Factors/*metabolism
Adenosine Triphosphate/metabolism ; Amino Acid Sequence ; Bacterial Proteins/chemistry ; Binding Sites ; DNA/chemistry ; DNA/ultrastructure ; Escherichia coli/metabolism ; Models, Molecular ; Protein Binding ; Protein Domains ; RNA Helicases/metabolism ; Transcription Factors/chemistry
Czasopismo naukowe
Tytuł :
Phase separation of Arabidopsis EMB1579 controls transcription, mRNA splicing, and development.
Autorzy :
Zhang Y; Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, China.
Li Z; Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, China.
Chen N; Key Laboratory of Plant Resources, Institute of Botany, Chinese Academy of Sciences, Beijing, China.
Huang Y; Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, China.
Huang S; Center for Plant Biology, School of Life Sciences, Tsinghua University, Beijing, China.
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Źródło :
PLoS biology [PLoS Biol] 2020 Jul 21; Vol. 18 (7), pp. e3000782. Date of Electronic Publication: 2020 Jul 21 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
Journal Info :
Publisher: Public Library of Science Country of Publication: United States NLM ID: 101183755 Publication Model: eCollection Cited Medium: Internet ISSN: 1545-7885 (Electronic) Linking ISSN: 15449173 NLM ISO Abbreviation: PLoS Biol. Subsets: MEDLINE
MeSH Terms :
Transcription, Genetic*
Arabidopsis/*genetics
Arabidopsis/*growth & development
Arabidopsis Proteins/*metabolism
Calcium-Binding Proteins/*metabolism
Plant Development/*genetics
RNA Splicing/*genetics
Arabidopsis Proteins/genetics ; Calcium-Binding Proteins/genetics ; Cell Nucleus/metabolism ; Flowers/physiology ; Histones/metabolism ; Loss of Function Mutation ; Lysine/metabolism ; Methylation ; Nuclear Proteins/metabolism ; Phenotype ; Plant Roots/cytology ; Protein Binding ; RNA, Messenger/genetics ; RNA, Messenger/metabolism ; Repetitive Sequences, Amino Acid
Czasopismo naukowe

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