Temat: "Transcription, Genetic" - OpacWWW

Skocz do pozycji: 1.

Tytuł:: Transcriptional neighborhoods regulate transcript isoform lengths and expression levels.
Autorzy:: Brooks AN; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, 69117 Heidelberg, Germany.
Hughes AL; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, 69117 Heidelberg, Germany.
Clauder-Münster S; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, 69117 Heidelberg, Germany.
Mitchell LA; Institute for Systems Genetics and Department of Biochemistry and Molecular Pharmacology, NYU Langone Health, New York, NY 10016, USA.
Boeke JD; Institute for Systems Genetics and Department of Biochemistry and Molecular Pharmacology, NYU Langone Health, New York, NY 10016, USA.; Department of Biomedical Engineering, NYU Tandon School of Engineering, Brooklyn, NY 11201, USA.
Steinmetz LM; European Molecular Biology Laboratory (EMBL), Genome Biology Unit, 69117 Heidelberg, Germany.; Stanford Genome Technology Center, Stanford University, Palo Alto, CA 94304, USA.; Department of Genetics, School of Medicine, Stanford University, Stanford, CA 94305, USA.; Pokaż więcej
Źródło:: Science (New York, N.Y.) [Science] 2022 Mar 04; Vol. 375 (6584), pp. 1000-1005. Date of Electronic Publication: 2022 Mar 03.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Genome, Fungal*
Transcription, Genetic*
Transcriptome*
RNA, Fungal/*genetics
RNA, Messenger/*genetics
Saccharomyces cerevisiae/*genetics
3' Untranslated Regions ; Base Sequence ; Gene Rearrangement ; Genetic Variation ; RNA, Fungal/chemistry ; RNA, Fungal/metabolism ; RNA, Messenger/chemistry ; RNA, Messenger/metabolism ; RNA-Seq ; Sequence Analysis, RNA

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Skocz do pozycji: 2.

Tytuł:: Principles of gene regulation quantitatively connect DNA to RNA and proteins in bacteria.
Autorzy:: Balakrishnan R; Department of Physics, University of California at San Diego, La Jolla, CA 92093, USA.
Mori M; Department of Physics, University of California at San Diego, La Jolla, CA 92093, USA.
Segota I; Departments of Medicine and Pharmacology, University of California at San Diego, La Jolla, CA 92093, USA.
Zhang Z; Section of Molecular Biology, Division of Biological Sciences, University of California at San Diego, La Jolla, CA 92093, USA.
Aebersold R; Faculty of Science, University of Zurich, Zürich, Switzerland.; Department of Biology, Institute of Molecular Systems Biology, ETH Zurich, Zürich, Switzerland.
Ludwig C; Bavarian Center for Biomolecular Mass Spectrometry (BayBioMS), Technical University of Munich (TUM), Freising, Germany.
Hwa T; Department of Physics, University of California at San Diego, La Jolla, CA 92093, USA.; Section of Molecular Biology, Division of Biological Sciences, University of California at San Diego, La Jolla, CA 92093, USA.; Pokaż więcej
Źródło:: Science (New York, N.Y.) [Science] 2022 Dec 09; Vol. 378 (6624), pp. eabk2066. Date of Electronic Publication: 2022 Dec 09.
Typ publikacji:: Journal Article
MeSH Terms:: Gene Expression Regulation, Bacterial*
Protein Biosynthesis*/genetics
Escherichia coli*/genetics
RNA, Messenger*/genetics
RNA, Messenger*/metabolism
RNA, Bacterial/genetics ; DNA, Bacterial/genetics ; Promoter Regions, Genetic ; Transcription, Genetic

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Skocz do pozycji: 3.

Tytuł:: Polyadenylation-related isoform switching in human evolution revealed by full-length transcript structure.
Autorzy:: Li Y; Laboratory of Bioinformatics and Genomic Medicine, Institute of Molecular Medicine, Peking University, Beijing, China.
Shen QS; Laboratory of Bioinformatics and Genomic Medicine, Institute of Molecular Medicine, Peking University, Beijing, China.
Peng Q; Laboratory of Bioinformatics and Genomic Medicine, Institute of Molecular Medicine, Peking University, Beijing, China.; College of Future Technology, Peking University, Beijing, China.
Ding W; Laboratory of Bioinformatics and Genomic Medicine, Institute of Molecular Medicine, Peking University, Beijing, China.; College of Future Technology, Peking University, Beijing, China.
Zhang J; Laboratory of Bioinformatics and Genomic Medicine, Institute of Molecular Medicine, Peking University, Beijing, China.; College of Future Technology, Peking University, Beijing, China.
Zhong X; Laboratory of Bioinformatics and Genomic Medicine, Institute of Molecular Medicine, Peking University, Beijing, China.
An NA; Laboratory of Bioinformatics and Genomic Medicine, Institute of Molecular Medicine, Peking University, Beijing, China.; College of Future Technology, Peking University, Beijing, China.
Ji M; Laboratory of Bioinformatics and Genomic Medicine, Institute of Molecular Medicine, Peking University, Beijing, China.; College of Future Technology, Peking University, Beijing, China.
Zhou WZ; State Key Laboratory of Cardiovascular Disease, Fuwai Hospital, Beijing, China.
Li CY; Laboratory of Bioinformatics and Genomic Medicine, Institute of Molecular Medicine, Peking University, Beijing, China.; College of Future Technology, Peking University, Beijing, China.; Pokaż więcej
Źródło:: Briefings in bioinformatics [Brief Bioinform] 2021 Nov 05; Vol. 22 (6).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Evolution, Molecular*
Poly A*
Polyadenylation*
RNA Isoforms*
Transcription, Genetic*
RNA, Messenger/*chemistry
RNA, Messenger/*genetics
3' Untranslated Regions ; Animals ; Gene Expression Profiling ; Gene Expression Regulation ; Humans ; Macaca mulatta ; Models, Genetic ; Nucleotide Motifs ; Organ Specificity ; RNA Transport ; Species Specificity ; Transcriptome

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Skocz do pozycji: 4.

Tytuł:: Advances in the Bioinformatics Knowledge of mRNA Polyadenylation in Baculovirus Genes.
Autorzy:: Peros IG; Laboratorio de Ingeniería Genética y Biología Celular y Molecular-Área Virosis de Invertebrados, Departamento de Ciencia y Tecnología, Instituto de Microbiología Básica y Aplicada, Universidad Nacional de Quilmes, Roque Sáenz Peña 352, B1876BXD Bernal, Buenos Aires, Argentina.
Cerrudo CS; Laboratorio de Ingeniería Genética y Biología Celular y Molecular-Área Virosis de Invertebrados, Departamento de Ciencia y Tecnología, Instituto de Microbiología Básica y Aplicada, Universidad Nacional de Quilmes, Roque Sáenz Peña 352, B1876BXD Bernal, Buenos Aires, Argentina.
Pilloff MG; Laboratorio de Virus Emergentes, Departamento de Ciencia y Tecnología, Instituto de Microbiología Básica y Aplicada, Universidad Nacional de Quilmes, Roque Sáenz Peña 352, B1876BXD Bernal, Buenos Aires, Argentina.
Belaich MN; Laboratorio de Ingeniería Genética y Biología Celular y Molecular-Área Virosis de Invertebrados, Departamento de Ciencia y Tecnología, Instituto de Microbiología Básica y Aplicada, Universidad Nacional de Quilmes, Roque Sáenz Peña 352, B1876BXD Bernal, Buenos Aires, Argentina.
Lozano ME; Laboratorio de Virus Emergentes, Departamento de Ciencia y Tecnología, Instituto de Microbiología Básica y Aplicada, Universidad Nacional de Quilmes, Roque Sáenz Peña 352, B1876BXD Bernal, Buenos Aires, Argentina.
Ghiringhelli PD; Laboratorio de Ingeniería Genética y Biología Celular y Molecular-Área Virosis de Invertebrados, Departamento de Ciencia y Tecnología, Instituto de Microbiología Básica y Aplicada, Universidad Nacional de Quilmes, Roque Sáenz Peña 352, B1876BXD Bernal, Buenos Aires, Argentina.; Pokaż więcej
Źródło:: Viruses [Viruses] 2020 Dec 06; Vol. 12 (12). Date of Electronic Publication: 2020 Dec 06.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms:: Gene Expression Regulation, Viral*
Polyadenylation*
Transcription, Genetic*
Baculoviridae/*genetics
Insect Viruses/*genetics
RNA, Messenger/*genetics
3' Untranslated Regions ; Animals ; Baculoviridae/metabolism ; Binding Sites ; Genome, Viral ; Genomics/methods ; Protein Binding ; RNA Processing, Post-Transcriptional ; Regulatory Sequences, Ribonucleic Acid ; Virus Replication

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Skocz do pozycji: 5.

Tytuł:: sRNA-mediated regulation of gal mRNA in E. coli: Involvement of transcript cleavage by RNase E together with Rho-dependent transcription termination.
Autorzy:: Jeon HJ; Department of Biological Sciences, College of Biological Sciences and Biotechnology, Chungnam National University, Daejeon, Republic of Korea.; Infection Control Convergence Research Center, College of Medicine, Chungnam National University, Daejeon, Republic of Korea.
Lee Y; Department of Biological Sciences, College of Biological Sciences and Biotechnology, Chungnam National University, Daejeon, Republic of Korea.
N MPA; Department of Biological Sciences, College of Biological Sciences and Biotechnology, Chungnam National University, Daejeon, Republic of Korea.
Wang X; State Key Laboratory of Agricultural Microbiology, College of Life Science and Technology, Huazhong Agricultural University, Wuhan, PR China.
Chattoraj DK; Basic Research Laboratory, Center for Cancer Research, National Cancer Institute, National Institutes of Health, Bethesda, Maryland, United States of America.
Lim HM; Department of Biological Sciences, College of Biological Sciences and Biotechnology, Chungnam National University, Daejeon, Republic of Korea.; Pokaż więcej
Źródło:: PLoS genetics [PLoS Genet] 2021 Oct 28; Vol. 17 (10), pp. e1009878. Date of Electronic Publication: 2021 Oct 28 (Print Publication: 2021).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Endoribonucleases/*genetics
Escherichia coli/*genetics
RNA, Messenger/*genetics
RNA, Small Untranslated/*genetics
Transcription Termination, Genetic/*physiology
Transcription, Genetic/*genetics
Escherichia coli Proteins/genetics ; Gene Expression Regulation, Bacterial/genetics ; Operon/genetics ; RNA, Bacterial/genetics

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Skocz do pozycji: 6.

Tytuł:: The cap-specific m6A methyltransferase, PCIF1/CAPAM, is dynamically recruited to the gene promoter in a transcription-dependent manner.
Autorzy:: Sugita A; Laboratory of Gene Regulation, Graduate School of Medicine and Pharmaceutical Sciences, University of Toyama, 2630 Sugitani, Toyama 930-0194, Japan.
Kuruma S; Laboratory of Gene Regulation, Graduate School of Medicine and Pharmaceutical Sciences, University of Toyama, 2630 Sugitani, Toyama 930-0194, Japan.
Yanagisawa N; Laboratory of Gene Regulation, Graduate School of Medicine and Pharmaceutical Sciences, University of Toyama, 2630 Sugitani, Toyama 930-0194, Japan.
Ishiguro H; Laboratory of Gene Regulation, Graduate School of Medicine and Pharmaceutical Sciences, University of Toyama, 2630 Sugitani, Toyama 930-0194, Japan.
Kano R; Laboratory of Gene Regulation, Graduate School of Medicine and Pharmaceutical Sciences, University of Toyama, 2630 Sugitani, Toyama 930-0194, Japan.
Ohkuma Y; Laboratory of Gene Regulation, Graduate School of Medicine and Pharmaceutical Sciences, University of Toyama, 2630 Sugitani, Toyama 930-0194, Japan.; Department of Biochemistry, Graduate School of Biomedical Sciences, Nagasaki University, 1-12-4 Sakamoto, Nagasaki 852-8523, Japan.
Hirose Y; Laboratory of Gene Regulation, Graduate School of Medicine and Pharmaceutical Sciences, University of Toyama, 2630 Sugitani, Toyama 930-0194, Japan.; Pokaż więcej
Źródło:: Journal of biochemistry [J Biochem] 2021 Oct 11; Vol. 170 (2), pp. 203-213.
Typ publikacji:: Journal Article
MeSH Terms:: Adaptor Proteins, Signal Transducing/*metabolism
Adenosine/*analogs & derivatives
Methyltransferases/*metabolism
Nuclear Proteins/*metabolism
RNA, Messenger/*metabolism
Adaptor Proteins, Signal Transducing/genetics ; Adenosine/genetics ; Adenosine/metabolism ; Chromatin/metabolism ; HeLa Cells ; Humans ; Methylation ; Methyltransferases/genetics ; Nuclear Proteins/genetics ; Phosphorylation ; Promoter Regions, Genetic ; Protein Transport ; RNA Polymerase II/metabolism ; RNA, Messenger/genetics ; Transcription, Genetic

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Skocz do pozycji: 7.

Tytuł:: Circadian rhythm shows potential for mRNA efficiency and self-organized division of labor in multinucleate cells.
Autorzy:: Zinn-Brooks L; Department of Mathematics, Harvey Mudd College, Claremont, California, United States of America.
Roper ML; Department of Mathematics, UCLA, Los Angeles, California, United States of America.; Pokaż więcej
Źródło:: PLoS computational biology [PLoS Comput Biol] 2021 Aug 02; Vol. 17 (8), pp. e1008828. Date of Electronic Publication: 2021 Aug 02 (Print Publication: 2021).
Typ publikacji:: Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:: Models, Biological*
Circadian Rhythm/*genetics
Circadian Rhythm/*physiology
RNA, Messenger/*genetics
RNA, Messenger/*metabolism
Algorithms ; Animals ; Cell Nucleus/genetics ; Cell Nucleus/metabolism ; Computational Biology ; Computer Simulation ; Cytoplasm/genetics ; Cytoplasm/metabolism ; Giant Cells/cytology ; Giant Cells/metabolism ; Humans ; Models, Genetic ; Neurospora crassa/cytology ; Neurospora crassa/genetics ; Neurospora crassa/physiology ; RNA, Fungal/genetics ; RNA, Fungal/metabolism ; Stochastic Processes ; Transcription, Genetic

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Skocz do pozycji: 8.

Tytuł:: Fluorometric determination of agrA gene transcription in methicillin-resistant Staphylococcus aureus with a graphene oxide-based assay using strand-displacement polymerization recycling and hybridization chain reaction.
Autorzy:: Ning Y; Department of Microbiology, The Medicine School of Hunan University of Chinese Medicine, Changsha, 410208, Hunan, People's Republic of China.
Chen S; Department of General Education, The School of Humanities and Social Science, The Chinese University of Hong Kong (Shenzhen campus), Shenzhen, 518172, Guangdong, People's Republic of China.
Hu J; Department of Microbiology, The Medicine School of Hunan University of Chinese Medicine, Changsha, 410208, Hunan, People's Republic of China.
Li L; Experimental Center of molecular biology, The Chinese Medicine School of Hunan University of Chinese Medicine, Changsha, 410208, Hunan, People's Republic of China.
Cheng L; Department of Microbiology, The Medicine School of Hunan University of Chinese Medicine, Changsha, 410208, Hunan, People's Republic of China.
Lu F; Department of Microbiology, The Medicine School of Hunan University of Chinese Medicine, Changsha, 410208, Hunan, People's Republic of China. .; Pokaż więcej
Źródło:: Mikrochimica acta [Mikrochim Acta] 2020 Jun 05; Vol. 187 (7), pp. 372. Date of Electronic Publication: 2020 Jun 05.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Transcription, Genetic*
Bacterial Proteins/*genetics
Biological Assay/*methods
Graphite/*chemistry
RNA, Bacterial/*analysis
RNA, Messenger/*analysis
DNA/chemistry ; DNA/genetics ; DNA Probes/chemistry ; DNA Probes/genetics ; Fluoresceins/chemistry ; Fluorescent Dyes/chemistry ; Limit of Detection ; Methicillin-Resistant Staphylococcus aureus ; Nucleic Acid Hybridization ; RNA, Messenger/genetics ; Spectrometry, Fluorescence/methods

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Skocz do pozycji: 9.

Tytuł:: A model explaining mRNA level fluctuations based on activity demands and RNA age.
Autorzy:: Xu Z; Department of Ecology, Jinan University, Guangzhou, China.; Department of Aquatic Bioscience, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan.
Asakawa S; Department of Aquatic Bioscience, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan.; Pokaż więcej
Źródło:: PLoS computational biology [PLoS Comput Biol] 2021 Jul 23; Vol. 17 (7), pp. e1009188. Date of Electronic Publication: 2021 Jul 23 (Print Publication: 2021).
Typ publikacji:: Journal Article
MeSH Terms:: Models, Biological*
RNA Stability*/genetics
RNA Stability*/physiology
RNA, Messenger/*metabolism
Computational Biology ; Computer Simulation ; RNA, Fungal/genetics ; RNA, Fungal/metabolism ; RNA, Messenger/genetics ; Saccharomyces cerevisiae/cytology ; Saccharomyces cerevisiae/genetics ; Saccharomyces cerevisiae/metabolism ; Saccharomyces cerevisiae Proteins/genetics ; Saccharomyces cerevisiae Proteins/metabolism ; Single-Cell Analysis ; Transcription, Genetic ; Transcriptome

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Skocz do pozycji: 10.

Tytuł:: Reprogramming mRNA Expression in Response to Defect in RNA Polymerase III Assembly in the Yeast Saccharomyces cerevisiae .
Autorzy:: Rudzińska I; Laboratory of tRNA Transcription, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5A, 02-106 Warsaw, Poland.
Cieśla M; Laboratory of tRNA Transcription, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5A, 02-106 Warsaw, Poland.
Turowski TW; Laboratory of tRNA Transcription, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5A, 02-106 Warsaw, Poland.; Wellcome Centre for Cell Biology, The University of Edinburgh, Edinburgh EH8 9YL, UK.
Armatowska A; Laboratory of tRNA Transcription, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5A, 02-106 Warsaw, Poland.
Leśniewska E; Laboratory of tRNA Transcription, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5A, 02-106 Warsaw, Poland.
Boguta M; Laboratory of tRNA Transcription, Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5A, 02-106 Warsaw, Poland.; Pokaż więcej
Źródło:: International journal of molecular sciences [Int J Mol Sci] 2021 Jul 07; Vol. 22 (14). Date of Electronic Publication: 2021 Jul 07.
Typ publikacji:: Journal Article
MeSH Terms:: RNA Polymerase III/*genetics
RNA, Messenger/*genetics
Saccharomyces cerevisiae/*genetics
DNA-Directed RNA Polymerases/genetics ; Down-Regulation/genetics ; Gene Expression Regulation, Fungal/genetics ; Humans ; RNA Polymerase II/genetics ; RNA, Transfer/genetics ; Saccharomyces cerevisiae Proteins/genetics ; Transcription Factors/genetics ; Transcription, Genetic/genetics ; Transcriptional Activation/genetics ; Transcriptome/genetics ; Up-Regulation/genetics

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