Temat: "Transcription Initiation Site" - OpacWWW

Skocz do pozycji: 41.

Tytuł:: YeasTSS: an integrative web database of yeast transcription start sites.
Autorzy:: McMillan J; Department of Biology, Saint Louis University, St. Louis, MO, USA.; Parks College of Engineering, Aviation and Technology, Program in Computer Engineering, Saint Louis University, St. Louis, MO, USA.
Lu Z; Department of Biology, Saint Louis University, St. Louis, MO, USA.
Rodriguez JS; Program of Bioinformatics and Computational Biology, Saint Louis University, St. Louis, MO, USA.
Ahn TH; Program of Bioinformatics and Computational Biology, Saint Louis University, St. Louis, MO, USA.; Department of Computer Sciences, Saint Louis University, St. Louis, MO, USA.
Lin Z; Department of Biology, Saint Louis University, St. Louis, MO, USA.; Program of Bioinformatics and Computational Biology, Saint Louis University, St. Louis, MO, USA.; Pokaż więcej
Źródło:: Database : the journal of biological databases and curation [Database (Oxford)] 2019 Jan 01; Vol. 2019.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:: Databases, Nucleic Acid*
Internet*
Transcription Initiation Site*
Yeasts/*genetics
Yeasts/classification

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Skocz do pozycji: 42.

Tytuł:: Co-inheritance of HBB:c.-106G > C, a rare single nucleotide variation at position -56 relative to transcription initiation site, with other known mutations in the globin clusters.
Autorzy:: Vinciguerra M; a Department of Hematology for Rare Diseases. UOC of Haematology for rare diseases of Blood and Blood-forming Organs. Laboratory for Molecular Diagnosis of rare Diseases , Villa Sofia-Cervello Hospital , Palermo , Italy.
Passarello C; a Department of Hematology for Rare Diseases. UOC of Haematology for rare diseases of Blood and Blood-forming Organs. Laboratory for Molecular Diagnosis of rare Diseases , Villa Sofia-Cervello Hospital , Palermo , Italy.
Cassarà F; a Department of Hematology for Rare Diseases. UOC of Haematology for rare diseases of Blood and Blood-forming Organs. Laboratory for Molecular Diagnosis of rare Diseases , Villa Sofia-Cervello Hospital , Palermo , Italy.
Leto F; a Department of Hematology for Rare Diseases. UOC of Haematology for rare diseases of Blood and Blood-forming Organs. Laboratory for Molecular Diagnosis of rare Diseases , Villa Sofia-Cervello Hospital , Palermo , Italy.
Cannata M; a Department of Hematology for Rare Diseases. UOC of Haematology for rare diseases of Blood and Blood-forming Organs. Laboratory for Molecular Diagnosis of rare Diseases , Villa Sofia-Cervello Hospital , Palermo , Italy.
Ferro E; b Department of Human Pathology of adult and Developmental age, Gaetano Barresi , G Martino University Hospital , Messina , Italy.
Anzà D; a Department of Hematology for Rare Diseases. UOC of Haematology for rare diseases of Blood and Blood-forming Organs. Laboratory for Molecular Diagnosis of rare Diseases , Villa Sofia-Cervello Hospital , Palermo , Italy.
Calvaruso G; a Department of Hematology for Rare Diseases. UOC of Haematology for rare diseases of Blood and Blood-forming Organs. Laboratory for Molecular Diagnosis of rare Diseases , Villa Sofia-Cervello Hospital , Palermo , Italy.
Maggio A; a Department of Hematology for Rare Diseases. UOC of Haematology for rare diseases of Blood and Blood-forming Organs. Laboratory for Molecular Diagnosis of rare Diseases , Villa Sofia-Cervello Hospital , Palermo , Italy.
Giambona A; a Department of Hematology for Rare Diseases. UOC of Haematology for rare diseases of Blood and Blood-forming Organs. Laboratory for Molecular Diagnosis of rare Diseases , Villa Sofia-Cervello Hospital , Palermo , Italy.; Pokaż więcej
Źródło:: Hematology (Amsterdam, Netherlands) [Hematology] 2018 Jul; Vol. 23 (6), pp. 368-372. Date of Electronic Publication: 2017 Nov 20.
Typ publikacji:: Journal Article
MeSH Terms:: Alleles*
Genotype*
Inheritance Patterns*
Mutation*
Polymorphism, Single Nucleotide*
Transcription Initiation Site*
beta-Globins/*genetics
Hemoglobinopathies/blood ; Hemoglobinopathies/genetics ; Humans ; Italy ; Multigene Family ; Pedigree ; Phenotype ; Sequence Analysis, DNA

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Skocz do pozycji: 43.

Tytuł:: Sequence-based evaluation of promoter context for prediction of transcription start sites in Arabidopsis and rice.
Autorzy:: Hiratsuka T; Graduate School of Natural Science and Technology, Gifu University, Yanagido 1-1, Gifu, 501-1193, Japan.
Makita Y; RIKEN Center for Sustainable Resource Science, Hirosue-Cho 1-7-22, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.; Faculty of Engineering, Maebashi Institute of Technology, Kamisadori 460-1, Maebashi, Gunma, 371-0816, Japan.
Yamamoto YY; Graduate School of Natural Science and Technology, Gifu University, Yanagido 1-1, Gifu, 501-1193, Japan. .; RIKEN Center for Sustainable Resource Science, Hirosue-Cho 1-7-22, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan. .; Faculty of Applied Biological Sciences, Gifu Uniersity, Yanagido 1-1, Gifu, 501-1193, Japan. .; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2022 Apr 28; Vol. 12 (1), pp. 6976. Date of Electronic Publication: 2022 Apr 28.
Typ publikacji:: Journal Article
MeSH Terms:: Arabidopsis*/genetics
Oryza*/genetics
Promoter Regions, Genetic ; TATA Box/genetics ; Transcription Initiation Site

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Skocz do pozycji: 44.

Tytuł:: CRISPRi for specific inhibition of miRNA clusters and miRNAs with high sequence homology.
Autorzy:: Drobna-Śledzińska M; Institute of Human Genetics, Polish Academy of Sciences, Strzeszynska 32, 60-479, Poznań, Poland. .
Maćkowska-Maślak N; Institute of Human Genetics, Polish Academy of Sciences, Strzeszynska 32, 60-479, Poznań, Poland.
Jaksik R; Silesian University of Technology, Akademicka 16, 44-100, Gliwice, Poland.
Dąbek P; Institute of Human Genetics, Polish Academy of Sciences, Strzeszynska 32, 60-479, Poznań, Poland.
Witt M; Institute of Human Genetics, Polish Academy of Sciences, Strzeszynska 32, 60-479, Poznań, Poland.
Dawidowska M; Institute of Human Genetics, Polish Academy of Sciences, Strzeszynska 32, 60-479, Poznań, Poland. .; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2022 Apr 15; Vol. 12 (1), pp. 6297. Date of Electronic Publication: 2022 Apr 15.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Clustered Regularly Interspaced Short Palindromic Repeats*/genetics
MicroRNAs*/genetics
MicroRNAs*/metabolism
RNA, Guide, CRISPR-Cas Systems/genetics ; RNA, Guide, CRISPR-Cas Systems/metabolism ; Sequence Homology ; Transcription Initiation Site

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Skocz do pozycji: 45.

Tytuł:: Transcriptional Control of Trpm6 by the Nuclear Receptor FXR.
Autorzy:: Kim EY; Department of Biochemistry and Cell Biology, Cell and Matrix Research Institute, School of Medicine, Kyungpook National University, Daegu 41944, Korea.
Lee JM; Department of Biochemistry and Cell Biology, Cell and Matrix Research Institute, School of Medicine, Kyungpook National University, Daegu 41944, Korea.; BK21 FOUR KNU Biomedical Convergence Program, Department of Biomedical Science, Kyungpook National University, Daegu 41944, Korea.; Pokaż więcej
Źródło:: International journal of molecular sciences [Int J Mol Sci] 2022 Feb 10; Vol. 23 (4). Date of Electronic Publication: 2022 Feb 10.
Typ publikacji:: Journal Article
MeSH Terms:: Receptors, Cytoplasmic and Nuclear/*genetics
TRPM Cation Channels/*genetics
Transcription, Genetic/*genetics
Animals ; Base Sequence ; Bile Acids and Salts/genetics ; Cell Line, Tumor ; Epithelial Cells/metabolism ; Gene Expression Regulation/genetics ; HeLa Cells ; Humans ; Intestines/metabolism ; Introns/genetics ; Magnesium/metabolism ; Mice ; Mice, Inbred C57BL ; Mice, Knockout ; Response Elements/genetics ; Transcription Initiation Site/physiology

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Skocz do pozycji: 46.

Tytuł:: Loss of the transcription repressor ZHX3 induces senescence-associated gene expression and mitochondrial-nucleolar activation.
Autorzy:: Igata T; Department of Medical Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto, Japan.
Tanaka H; Department of Medical Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto, Japan.
Etoh K; Department of Medical Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto, Japan.
Hong S; Department of Medical Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto, Japan.
Tani N; Department of Medical Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto, Japan.
Koga T; Department of Medical Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto, Japan.
Nakao M; Department of Medical Cell Biology, Institute of Molecular Embryology and Genetics, Kumamoto University, Kumamoto, Japan.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2022 Jan 27; Vol. 17 (1), pp. e0262488. Date of Electronic Publication: 2022 Jan 27 (Print Publication: 2022).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Cell Nucleolus/*genetics
Cellular Senescence/*genetics
Gene Expression/*genetics
Gene Expression Regulation/*genetics
Homeodomain Proteins/*genetics
Mitochondria/*genetics
Repressor Proteins/*genetics
Animals ; Cell Proliferation/genetics ; Chromatin/genetics ; Cyclin-Dependent Kinase Inhibitor p16/genetics ; DNA Replication/genetics ; Down-Regulation/genetics ; Epigenomics/methods ; Female ; Fibroblasts/physiology ; Humans ; Male ; Mice ; Mice, Inbred C57BL ; RNA, Ribosomal/genetics ; Transcription Initiation Site/physiology ; Up-Regulation/genetics

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Skocz do pozycji: 47.

Tytuł:: Genome-scale analysis of genetic regulatory elements in Streptomyces avermitilis MA-4680 using transcript boundary information.
Autorzy:: Lee Y; Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.
Lee N; Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.
Hwang S; Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.
Kim W; Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.
Cho S; Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.; KAIST Institute for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea.
Palsson BO; Department of Bioengineering, University of California San Diego, La Jolla, CA, 92093, USA.; Department of Pediatrics, University of California San Diego, La Jolla, CA, 92093, USA.; Novo Nordisk Foundation Center for Biosustainability, 2800, Kongens Lyngby, Denmark.
Cho BK; Department of Biological Sciences, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea. .; KAIST Institute for the BioCentury, Korea Advanced Institute of Science and Technology, Daejeon, 34141, Republic of Korea. .; Pokaż więcej
Źródło:: BMC genomics [BMC Genomics] 2022 Jan 21; Vol. 23 (1), pp. 68. Date of Electronic Publication: 2022 Jan 21.
Typ publikacji:: Journal Article
MeSH Terms:: Streptomyces*/genetics
Streptomyces*/metabolism
Bacterial Proteins/genetics ; Bacterial Proteins/metabolism ; Gene Expression Regulation, Bacterial ; Ivermectin ; Multigene Family ; Sigma Factor ; Transcription Initiation Site
SCR Organism:: Streptomyces avermitilis

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Skocz do pozycji: 48.

Tytuł:: Genomic studies controvert the existence of the CUX1 p75 isoform.
Autorzy:: Krishnan M; Committee on Cancer Biology, The University of Chicago, Chicago, IL, USA.; Department of Pathology, The University of Chicago, Chicago, IL, USA.
Senagolage MD; Department of Pathology, The University of Chicago, Chicago, IL, USA.
Baeten JT; Department of Pathology, The University of Chicago, Chicago, IL, USA.
Wolfgeher DJ; Department of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL, USA.
Khan S; Department of Pathology, The University of Chicago, Chicago, IL, USA.
Kron SJ; Committee on Cancer Biology, The University of Chicago, Chicago, IL, USA.; Department of Molecular Genetics and Cell Biology, The University of Chicago, Chicago, IL, USA.; The University of Chicago Medicine Comprehensive Cancer Center, University of Chicago, Chicago, IL, USA.
McNerney ME; Committee on Cancer Biology, The University of Chicago, Chicago, IL, USA. .; Department of Pathology, The University of Chicago, Chicago, IL, USA. .; Department of Pediatrics, The University of Chicago, Chicago, IL, USA. .; The University of Chicago Medicine Comprehensive Cancer Center, University of Chicago, Chicago, IL, USA. .; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2022 Jan 07; Vol. 12 (1), pp. 151. Date of Electronic Publication: 2022 Jan 07.
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:: Genomics*
Hematopoietic Stem Cells/*metabolism
Homeodomain Proteins/*genetics
Repressor Proteins/*genetics
Transcription Factors/*genetics
Animals ; HL-60 Cells ; Homeodomain Proteins/metabolism ; Humans ; K562 Cells ; MCF-7 Cells ; Mice ; NIH 3T3 Cells ; Protein Isoforms ; RNA Processing, Post-Transcriptional ; Repressor Proteins/metabolism ; Transcription Factors/metabolism ; Transcription Initiation Site ; Transcription, Genetic ; Transcriptional Activation ; U937 Cells

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Skocz do pozycji: 49.

Tytuł:: Cap analysis of gene expression (CAGE) and noncoding regulatory elements.
Autorzy:: Guerrini MM; Laboratory for Autoimmune Diseases, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa, Japan. .
Oguchi A; RIKEN-IFOM Joint Laboratory for Cancer Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.
Suzuki A; Laboratory for Autoimmune Diseases, RIKEN Center for Integrative Medical Sciences, Yokohama, Kanagawa, Japan.
Murakawa Y; RIKEN-IFOM Joint Laboratory for Cancer Genomics, RIKEN Center for Integrative Medical Sciences, Yokohama, Japan.; IFOM-the FIRC Institute of Molecular Oncology, Milan, Italy.; Pokaż więcej
Źródło:: Seminars in immunopathology [Semin Immunopathol] 2022 Jan; Vol. 44 (1), pp. 127-136. Date of Electronic Publication: 2021 Sep 01.
Typ publikacji:: Journal Article; Review
MeSH Terms:: Genome-Wide Association Study*
Regulatory Sequences, Nucleic Acid*/genetics
Gene Expression ; Humans ; Promoter Regions, Genetic ; Transcription Initiation Site

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Skocz do pozycji: 50.

Tytuł:: High-throughput detection of RNA processing in bacteria.
Autorzy:: Gill EE; Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada.
Chan LS; Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada.
Winsor GL; Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada.
Dobson N; Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada.
Lo R; Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada.
Ho Sui SJ; Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada.
Dhillon BK; Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada.
Taylor PK; Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, BC, Canada.
Shrestha R; Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada.
Spencer C; Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada.
Hancock REW; Centre for Microbial Diseases and Immunity Research, University of British Columbia, Vancouver, BC, Canada.
Unrau PJ; Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada. .
Brinkman FSL; Department of Molecular Biology and Biochemistry, Simon Fraser University, 8888 University Drive, Burnaby, BC, V5A 1S6, Canada. .; Pokaż więcej
Źródło:: BMC genomics [BMC Genomics] 2018 Mar 27; Vol. 19 (1), pp. 223. Date of Electronic Publication: 2018 Mar 27.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Genome, Bacterial*
RNA Processing, Post-Transcriptional*
Transcription Initiation Site*
Pseudomonas aeruginosa/*genetics
RNA, Bacterial/*genetics
Chromosome Mapping ; High-Throughput Nucleotide Sequencing ; Promoter Regions, Genetic ; Pseudomonas aeruginosa/growth & development ; Sequence Analysis, RNA

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Skocz do pozycji: 51.

Tytuł:: Distinct core promoter codes drive transcription initiation at key developmental transitions in a marine chordate.
Autorzy:: Danks GB; Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, N-5006, Norway. .
Navratilova P; Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, N-5006, Norway.
Lenhard B; Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, N-5006, Norway.; Computational Regulatory Genomics, MRC London Institute of Medical Sciences, London, W12 0NN, United Kingdom.; Institute of Clinical Sciences, Faculty of Medicine, Imperial College London, London, W12 0NN, United Kingdom.
Thompson EM; Sars International Centre for Marine Molecular Biology, University of Bergen, Bergen, N-5006, Norway. .; Department of Biology, University of Bergen, Bergen, N-5006, Norway. .; Pokaż więcej
Źródło:: BMC genomics [BMC Genomics] 2018 Feb 26; Vol. 19 (1), pp. 164. Date of Electronic Publication: 2018 Feb 26.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Gene Expression Regulation, Developmental*
Transcription Initiation Site*
Chordata/*genetics
Animals ; Chordata/metabolism ; DNA Methylation ; Genome ; Nucleosomes/metabolism ; Promoter Regions, Genetic ; Spermatogenesis ; TATA Box ; Transcription, Genetic

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Skocz do pozycji: 52.

Tytuł:: Transcription start site profiling uncovers divergent transcription and enhancer-associated RNAs in Drosophila melanogaster.
Autorzy:: Meers MP; Curriculum in Genetics and Molecular Biology, University of North Carolina, Chapel Hill, 27599, USA.; Integrative Program for Biological and Genome Sciences, University of North Carolina, Chapel Hill, NC, 27599, USA.; Departments of Biology and Genetics, University of North Carolina, Chapel Hill, 27599, USA.
Adelman K; Department of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, 02115, USA.
Duronio RJ; Curriculum in Genetics and Molecular Biology, University of North Carolina, Chapel Hill, 27599, USA.; Integrative Program for Biological and Genome Sciences, University of North Carolina, Chapel Hill, NC, 27599, USA.; Departments of Biology and Genetics, University of North Carolina, Chapel Hill, 27599, USA.
Strahl BD; Curriculum in Genetics and Molecular Biology, University of North Carolina, Chapel Hill, 27599, USA.; Department of Biochemistry and Biophysics, University of North Carolina, Chapel Hill, NC, 27599, USA.
McKay DJ; Curriculum in Genetics and Molecular Biology, University of North Carolina, Chapel Hill, 27599, USA.; Integrative Program for Biological and Genome Sciences, University of North Carolina, Chapel Hill, NC, 27599, USA.; Departments of Biology and Genetics, University of North Carolina, Chapel Hill, 27599, USA.
Matera AG; Curriculum in Genetics and Molecular Biology, University of North Carolina, Chapel Hill, 27599, USA. .; Integrative Program for Biological and Genome Sciences, University of North Carolina, Chapel Hill, NC, 27599, USA. .; Departments of Biology and Genetics, University of North Carolina, Chapel Hill, 27599, USA. .; Pokaż więcej
Źródło:: BMC genomics [BMC Genomics] 2018 Feb 21; Vol. 19 (1), pp. 157. Date of Electronic Publication: 2018 Feb 21.
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:: Enhancer Elements, Genetic*
Transcription Initiation Site*
Drosophila melanogaster/*genetics
RNA/*genetics
Animals ; Computational Biology/methods ; Gene Expression Profiling/methods ; Gene Expression Regulation ; Nucleosomes ; Promoter Regions, Genetic ; Transcription, Genetic

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Skocz do pozycji: 53.

Tytuł:: Genome-wide DNA methylation analysis of senescence in repetitively infected memory cytotoxic T lymphocytes.
Autorzy:: Shosaku J; Department of Molecular Preventive Medicine, Graduate School of Medicine, The University of Tokyo, Tokyo, Japan.; Pokaż więcej
Źródło:: Immunology [Immunology] 2018 Feb; Vol. 153 (2), pp. 253-267. Date of Electronic Publication: 2017 Oct 24.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Immunologic Memory*/immunology
Transcription Initiation Site*
CD8-Positive T-Lymphocytes/*immunology
Cellular Senescence/*immunology
DNA Methylation/*immunology
Enhancer Elements, Genetic/*immunology
Transcription, Genetic/*immunology
Animals ; CD8-Positive T-Lymphocytes/cytology ; Cellular Senescence/genetics ; DNA Methylation/genetics ; Down-Regulation/immunology ; Genome-Wide Association Study ; Mice ; Mice, Transgenic

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Skocz do pozycji: 54.

Tytuł:: Genome-wide identification of enhancers and transcription factors regulating the myogenic differentiation of bovine satellite cells.
Autorzy:: Lyu P; Department of Animal and Poultry Sciences, Virginia Tech, Blacksburg, VA, 24061, USA.
Settlage RE; Advanced Research Computing, Virginia Tech, Blacksburg, VA, 24061, USA.
Jiang H; Department of Animal and Poultry Sciences, Virginia Tech, Blacksburg, VA, 24061, USA. .; Pokaż więcej
Źródło:: BMC genomics [BMC Genomics] 2021 Dec 16; Vol. 22 (1), pp. 901. Date of Electronic Publication: 2021 Dec 16.
Typ publikacji:: Journal Article
MeSH Terms:: Regulatory Sequences, Nucleic Acid*
Transcription Factors*/genetics
Animals ; Binding Sites ; Cattle ; Cell Differentiation/genetics ; Transcription Initiation Site

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Skocz do pozycji: 55.

Tytuł:: Sequencing of Argonaute-bound microRNA/mRNA hybrids reveals regulation of the unfolded protein response by microRNA-320a.
Autorzy:: Fields CJ; Department of Biochemistry and Molecular Biology, University of Florida, College of Medicine, Gainesville, Florida, United States of America.; UF Health Cancer Center, University of Florida, Gainesville, Florida, United States of America.
Li L; Department of Biochemistry and Molecular Biology, University of Florida, College of Medicine, Gainesville, Florida, United States of America.; UF Health Cancer Center, University of Florida, Gainesville, Florida, United States of America.
Hiers NM; Department of Biochemistry and Molecular Biology, University of Florida, College of Medicine, Gainesville, Florida, United States of America.; UF Health Cancer Center, University of Florida, Gainesville, Florida, United States of America.
Li T; Department of Biochemistry and Molecular Biology, University of Florida, College of Medicine, Gainesville, Florida, United States of America.; UF Health Cancer Center, University of Florida, Gainesville, Florida, United States of America.
Sheng P; Department of Biochemistry and Molecular Biology, University of Florida, College of Medicine, Gainesville, Florida, United States of America.; UF Health Cancer Center, University of Florida, Gainesville, Florida, United States of America.
Huda T; Department of Biochemistry and Molecular Biology, University of Florida, College of Medicine, Gainesville, Florida, United States of America.
Shan J; UF Health Cancer Center, University of Florida, Gainesville, Florida, United States of America.
Gay L; UF Health Cancer Center, University of Florida, Gainesville, Florida, United States of America.; Department of Molecular Genetics and Microbiology, University of Florida, College of Medicine, Gainesville, Florida, United States of America.
Gu T; Bioinformatics, Interdisciplinary Center for Biotechnology Research, University of Florida, Gainesville, Florida, United States of America.
Bian J; Department of Health Outcomes and Biomedical Informatics, University of Florida, College of Medicine, Gainesville, Florida, United States of America.
Kilberg MS; Department of Biochemistry and Molecular Biology, University of Florida, College of Medicine, Gainesville, Florida, United States of America.; UF Health Cancer Center, University of Florida, Gainesville, Florida, United States of America.
Renne R; UF Health Cancer Center, University of Florida, Gainesville, Florida, United States of America.; Department of Molecular Genetics and Microbiology, University of Florida, College of Medicine, Gainesville, Florida, United States of America.; UF Genetics Institute, University of Florida, Gainesville, Florida, United States of America.
Xie M; Department of Biochemistry and Molecular Biology, University of Florida, College of Medicine, Gainesville, Florida, United States of America.; UF Health Cancer Center, University of Florida, Gainesville, Florida, United States of America.; UF Genetics Institute, University of Florida, Gainesville, Florida, United States of America.; Pokaż więcej
Źródło:: PLoS genetics [PLoS Genet] 2021 Dec 16; Vol. 17 (12), pp. e1009934. Date of Electronic Publication: 2021 Dec 16 (Print Publication: 2021).
Typ publikacji:: Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:: Activating Transcription Factor 4/*genetics
Colorectal Neoplasms/*genetics
MicroRNAs/*genetics
Ribonuclease III/*genetics
Antagomirs/genetics ; Argonaute Proteins/genetics ; Calnexin/genetics ; Cell Movement/genetics ; Cell Proliferation/genetics ; Colorectal Neoplasms/pathology ; DEAD-box RNA Helicases/genetics ; Endoplasmic Reticulum/genetics ; Endoplasmic Reticulum Stress/genetics ; Eukaryotic Initiation Factor-2/genetics ; Gene Knockout Techniques ; HCT116 Cells ; Humans ; Signal Transduction/genetics ; Transcription Initiation Site

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Skocz do pozycji: 56.

Tytuł:: A novel computational framework for genome-scale alternative transcription units prediction.
Autorzy:: Wang Q; School of Mathematics, Shandong University, Jinan 250200, China.
Liu Z; School of Mathematics, Shandong University, Jinan 250200, China.; Department of Biomedical Informatics, College of Medicine, The Ohio State University, Columbus, OH 43210, USA.
Yan B; New England Biolabs Inc., Ipswich, MA 01938, USA.
Chou WC; Infectious Disease and Microbiome Program, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Ettwiller L; New England Biolabs Inc., Ipswich, MA 01938, USA.
Ma Q; Department of Biomedical Informatics, College of Medicine, The Ohio State University, Columbus, OH 43210, USA.
Liu B; School of Mathematics, Shandong University, Jinan 250200, China.; Pokaż więcej
Źródło:: Briefings in bioinformatics [Brief Bioinform] 2021 Nov 05; Vol. 22 (6).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: RNA Isoforms*
Transcription, Genetic*
Computational Biology/*methods
Genome-Wide Association Study/*methods
Algorithms ; Bacteria/genetics ; Databases, Genetic ; Escherichia coli/genetics ; Genome, Bacterial ; Genomics/methods ; Humans ; RNA, Messenger/genetics ; RNA-Seq ; Single-Cell Analysis/methods ; Terminator Regions, Genetic ; Transcription Initiation Site

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Skocz do pozycji: 57.

Tytuł:: Sequence variants identification at the KCNQ1OT1:TSS differentially Methylated region in isolated omphalocele cases.
Autorzy:: Bedeschi MF; Clinical Genetics Unit, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy. .
Calvello M; Division of Pathology, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico; Department of Pathophysiology & Transplantation, Università degli Studi di Milano, Milan, Italy.
Paganini L; Division of Pathology, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico; Department of Pathophysiology & Transplantation, Università degli Studi di Milano, Milan, Italy.
Pezzani L; Division of Pathology, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico; Department of Pathophysiology & Transplantation, Università degli Studi di Milano, Milan, Italy.
Baccarin M; Medical Genetics Laboratory, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.
Fontana L; Division of Pathology, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico; Department of Pathophysiology & Transplantation, Università degli Studi di Milano, Milan, Italy.
Sirchia SM; Department of Health Science, Università degli Studi di Milano, Milan, Italy.
Guerneri S; Medical Genetics Laboratory, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.
Canazza L; Department of Pediatric Surgery, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.
Leva E; Department of Pediatric Surgery, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.
Colombo L; Neonatal Intensive Care Unit, Department of Clinical Science and Community Health, Università degli Studi di Milano and Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.
Lalatta F; Clinical Genetics Unit, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.
Mosca F; Neonatal Intensive Care Unit, Department of Clinical Science and Community Health, Università degli Studi di Milano and Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico, Milan, Italy.
Tabano S; Division of Pathology, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico; Department of Pathophysiology & Transplantation, Università degli Studi di Milano, Milan, Italy.
Miozzo M; Division of Pathology, Fondazione IRCCS Ca' Granda Ospedale Maggiore Policlinico; Department of Pathophysiology & Transplantation, Università degli Studi di Milano, Milan, Italy.; Pokaż więcej
Źródło:: BMC medical genetics [BMC Med Genet] 2017 Oct 18; Vol. 18 (1), pp. 115. Date of Electronic Publication: 2017 Oct 18.
Typ publikacji:: Journal Article
MeSH Terms:: DNA Methylation*
Genetic Variation*
Transcription Initiation Site*
Hernia, Umbilical/*genetics
Base Sequence ; Beckwith-Wiedemann Syndrome/genetics ; Beckwith-Wiedemann Syndrome/pathology ; Child, Preschool ; Chromosomes, Human, Pair 11/genetics ; Consanguinity ; Cyclin-Dependent Kinase Inhibitor p57/genetics ; DNA Mutational Analysis/methods ; Female ; Genetic Predisposition to Disease/genetics ; Genomic Imprinting ; Humans ; Infant ; Infant, Newborn ; Male ; Mutation ; Pedigree ; Polymorphism, Single Nucleotide ; Potassium Channels, Voltage-Gated/genetics ; Sequence Deletion ; Sequence Homology, Nucleic Acid

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Skocz do pozycji: 58.

Tytuł:: Systematic analysis of transcription start sites in avian development.
Autorzy:: Lizio M; Division of Genomic Technologies, RIKEN Center for Life Science Technologies (CLST), Yokohama, Japan.; RIKEN Omics Science Center (OSC), Yokohama, Japan.
Deviatiiarov R; Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia.
Nagai H; International Research Center for Medical Sciences (IRCMS), Kumamoto University, Kumamoto, Japan.; RIKEN Center for Developmental Biology, Kobe, Japan.
Galan L; Instituto de Biomedicina y Biotecnología de Cantabria, IBBTEC (CSIC-Universidad de Cantabria-SODERCAN), Santander, Spain.
Arner E; Division of Genomic Technologies, RIKEN Center for Life Science Technologies (CLST), Yokohama, Japan.; RIKEN Omics Science Center (OSC), Yokohama, Japan.
Itoh M; Division of Genomic Technologies, RIKEN Center for Life Science Technologies (CLST), Yokohama, Japan.; RIKEN Omics Science Center (OSC), Yokohama, Japan.; RIKEN Preventive Medicine and Diagnosis Innovation Program, Yokohama, Japan.
Lassmann T; Division of Genomic Technologies, RIKEN Center for Life Science Technologies (CLST), Yokohama, Japan.; RIKEN Omics Science Center (OSC), Yokohama, Japan.
Kasukawa T; Division of Genomic Technologies, RIKEN Center for Life Science Technologies (CLST), Yokohama, Japan.
Hasegawa A; Division of Genomic Technologies, RIKEN Center for Life Science Technologies (CLST), Yokohama, Japan.
Ros MA; Instituto de Biomedicina y Biotecnología de Cantabria, IBBTEC (CSIC-Universidad de Cantabria-SODERCAN), Santander, Spain.
Hayashizaki Y; RIKEN Omics Science Center (OSC), Yokohama, Japan.; RIKEN Preventive Medicine and Diagnosis Innovation Program, Yokohama, Japan.
Carninci P; Division of Genomic Technologies, RIKEN Center for Life Science Technologies (CLST), Yokohama, Japan.; RIKEN Omics Science Center (OSC), Yokohama, Japan.
Forrest ARR; Division of Genomic Technologies, RIKEN Center for Life Science Technologies (CLST), Yokohama, Japan.; RIKEN Omics Science Center (OSC), Yokohama, Japan.; Harry Perkins Institute of Medical Research, QEII Medical Centre and Centre for Medical Research, the University of Western Australia, Nedlands, Western Australia, Australia.
Kawaji H; Division of Genomic Technologies, RIKEN Center for Life Science Technologies (CLST), Yokohama, Japan.; RIKEN Omics Science Center (OSC), Yokohama, Japan.; RIKEN Preventive Medicine and Diagnosis Innovation Program, Yokohama, Japan.
Gusev O; Division of Genomic Technologies, RIKEN Center for Life Science Technologies (CLST), Yokohama, Japan.; Institute of Fundamental Medicine and Biology, Kazan Federal University, Kazan, Russia.; RIKEN Preventive Medicine and Diagnosis Innovation Program, Yokohama, Japan.; RIKEN Innovation Center, Wako, Japan.
Sheng G; International Research Center for Medical Sciences (IRCMS), Kumamoto University, Kumamoto, Japan.; RIKEN Center for Developmental Biology, Kobe, Japan.; Pokaż więcej
Źródło:: PLoS biology [PLoS Biol] 2017 Sep 05; Vol. 15 (9), pp. e2002887. Date of Electronic Publication: 2017 Sep 05 (Print Publication: 2017).
Typ publikacji:: Journal Article
MeSH Terms:: Embryonic Development*
Genome-Wide Association Study*
Transcription Initiation Site*
Animals ; Biological Evolution ; Chick Embryo ; Clustered Regularly Interspaced Short Palindromic Repeats

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Skocz do pozycji: 59.

Tytuł:: TSS-Seq analysis of low pH-induced gene expression in intercalated cells in the renal collecting duct.
Autorzy:: Izumi Y; Department of Nephrology, Kumamoto University Graduate School of Medical Sciences, Kumamoto, Japan.
Inoue H; Department of Nephrology, Kumamoto University Graduate School of Medical Sciences, Kumamoto, Japan.
Nakayama Y; Department of Nephrology, Kumamoto University Graduate School of Medical Sciences, Kumamoto, Japan.
Eguchi K; Department of Nephrology, Kumamoto University Graduate School of Medical Sciences, Kumamoto, Japan.
Yasuoka Y; Department of Physiology, Kitasato University School of Medicine, Sagamihara, Japan.
Matsuo N; Department of Nephrology, Kumamoto University Graduate School of Medical Sciences, Kumamoto, Japan.
Nonoguchi H; Department of Internal Medicine and Education & Research Center, Kitasato University Medical Center, Kitamoto, Japan.
Kakizoe Y; Department of Nephrology, Kumamoto University Graduate School of Medical Sciences, Kumamoto, Japan.
Kuwabara T; Department of Nephrology, Kumamoto University Graduate School of Medical Sciences, Kumamoto, Japan.
Mukoyama M; Department of Nephrology, Kumamoto University Graduate School of Medical Sciences, Kumamoto, Japan.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2017 Aug 31; Vol. 12 (8), pp. e0184185. Date of Electronic Publication: 2017 Aug 31 (Print Publication: 2017).
Typ publikacji:: Journal Article
MeSH Terms:: Transcription Initiation Site*
Acidosis/*genetics
Acute Kidney Injury/*genetics
Renal Insufficiency, Chronic/*genetics
Acidosis/complications ; Acidosis/pathology ; Acute Kidney Injury/complications ; Acute Kidney Injury/pathology ; Animals ; Fibrosis/genetics ; Fibrosis/pathology ; Gene Expression Regulation ; Humans ; Hydrogen-Ion Concentration ; Kidney/metabolism ; Kidney/pathology ; Kidney Tubules/metabolism ; Kidney Tubules/pathology ; Leupeptins/administration & dosage ; Mice ; Rats ; Renal Insufficiency, Chronic/complications ; Renal Insufficiency, Chronic/pathology ; Signal Transduction/genetics

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Skocz do pozycji: 60.

Tytuł:: Identification and prediction of alternative transcription start sites that generate rod photoreceptor-specific transcripts from ubiquitously expressed genes.
Autorzy:: Popova EY; Department of Neural and Behavioral Sciences, Penn State University, College of Medicine, Hershey, Pennsylvania, United States of America.; Penn State Hershey Eye Center, Hershey, Pennsylvania, United States of America.
Salzberg AC; Bioinformatics Core, Penn State University College of Medicine, Hershey, Pennsylvania, United States of America.
Yang C; Department of Neural and Behavioral Sciences, Penn State University, College of Medicine, Hershey, Pennsylvania, United States of America.
Zhang SS; Department of Neural and Behavioral Sciences, Penn State University, College of Medicine, Hershey, Pennsylvania, United States of America.; Penn State Hershey Eye Center, Hershey, Pennsylvania, United States of America.
Barnstable CJ; Department of Neural and Behavioral Sciences, Penn State University, College of Medicine, Hershey, Pennsylvania, United States of America.; Penn State Hershey Eye Center, Hershey, Pennsylvania, United States of America.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2017 Jun 22; Vol. 12 (6), pp. e0179230. Date of Electronic Publication: 2017 Jun 22 (Print Publication: 2017).
Typ publikacji:: Journal Article
MeSH Terms:: Computational Biology*
Transcription Initiation Site*
Transcriptome*
Retinal Rod Photoreceptor Cells/*metabolism
Animals ; Epigenesis, Genetic ; Mice ; Organ Specificity ; Protein Isoforms/genetics ; RNA, Messenger/genetics ; RNA, Messenger/metabolism

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