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Tytuł:
GTM-decon: guided-topic modeling of single-cell transcriptomes enables sub-cell-type and disease-subtype deconvolution of bulk transcriptomes.
Autorzy:
Swapna LS; School of Computer Science, McGill University, Montreal, QC, Canada.
Huang M; School of Computer Science, McGill University, Montreal, QC, Canada.
Li Y; School of Computer Science, McGill University, Montreal, QC, Canada. .
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Źródło:
Genome biology [Genome Biol] 2023 Aug 18; Vol. 24 (1), pp. 190. Date of Electronic Publication: 2023 Aug 18.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Transcriptome*
Phenotype
Czasopismo naukowe
Szczegóły
Tytuł:
Building an optimal predictive model for imputing tissue-specific gene expression by combining genotype and whole-blood transcriptome data.
Autorzy:
Jung S; Interdisciplinary Program in Bioengineering, Seoul National University, Seoul, Republic of Korea.
Lee CH; Department of Biostatistics, Columbia University, New York, NY, USA.
Sul JH; Department of Psychiatry, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA.
Han B; Interdisciplinary Program in Bioengineering, Seoul National University, Seoul, Republic of Korea.; Department of Biomedical Sciences, BK21 Plus Biomedical Science Project, Seoul National University College of Medicine, Seoul, Republic of Korea.
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Źródło:
HGG advances [HGG Adv] 2023 Jul 11; Vol. 4 (4), pp. 100223. Date of Electronic Publication: 2023 Jul 11 (Print Publication: 2023).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Transcriptome*/genetics
Genome-Wide Association Study*/methods
Humans ; Phenotype ; Quantitative Trait Loci ; Polymorphism, Single Nucleotide ; Genotype
Czasopismo naukowe
Szczegóły
Tytuł:
Are New Phthalate Ester Substitutes Safer than Traditional DBP and DiBP? Comparative Endocrine-Disrupting Analyses on Zebrafish Using In Vivo , Transcriptome, and In Silico Approaches.
Autorzy:
Tan H; State Key Laboratory of Pollution Control and Resources Reuse, School of Environment, Nanjing University, Nanjing 210023, Jiangsu, China.; Jiangsu Province Ecology and Environment Protection Key Laboratory of Chemical Safety and Health Risk, Nanjing 210023, Jiangsu, China.
Gao P; State Key Laboratory of Pollution Control and Resources Reuse, School of Environment, Nanjing University, Nanjing 210023, Jiangsu, China.
Luo Y; State Key Laboratory of Pollution Control and Resources Reuse, School of Environment, Nanjing University, Nanjing 210023, Jiangsu, China.
Gou X; State Key Laboratory of Pollution Control and Resources Reuse, School of Environment, Nanjing University, Nanjing 210023, Jiangsu, China.
Xia P; State Key Laboratory of Pollution Control and Resources Reuse, School of Environment, Nanjing University, Nanjing 210023, Jiangsu, China.
Wang P; State Key Laboratory of Pollution Control and Resources Reuse, School of Environment, Nanjing University, Nanjing 210023, Jiangsu, China.
Yan L; State Key Laboratory of Pollution Control and Resources Reuse, School of Environment, Nanjing University, Nanjing 210023, Jiangsu, China.
Zhang S; State Key Laboratory of Pollution Control and Resources Reuse, School of Environment, Nanjing University, Nanjing 210023, Jiangsu, China.
Guo J; State Key Laboratory of Pollution Control and Resources Reuse, School of Environment, Nanjing University, Nanjing 210023, Jiangsu, China.; Jiangsu Province Ecology and Environment Protection Key Laboratory of Chemical Safety and Health Risk, Nanjing 210023, Jiangsu, China.
Zhang X; State Key Laboratory of Pollution Control and Resources Reuse, School of Environment, Nanjing University, Nanjing 210023, Jiangsu, China.; Jiangsu Province Ecology and Environment Protection Key Laboratory of Chemical Safety and Health Risk, Nanjing 210023, Jiangsu, China.
Yu H; State Key Laboratory of Pollution Control and Resources Reuse, School of Environment, Nanjing University, Nanjing 210023, Jiangsu, China.; Jiangsu Province Ecology and Environment Protection Key Laboratory of Chemical Safety and Health Risk, Nanjing 210023, Jiangsu, China.
Shi W; State Key Laboratory of Pollution Control and Resources Reuse, School of Environment, Nanjing University, Nanjing 210023, Jiangsu, China.; Jiangsu Province Ecology and Environment Protection Key Laboratory of Chemical Safety and Health Risk, Nanjing 210023, Jiangsu, China.
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Źródło:
Environmental science & technology [Environ Sci Technol] 2023 Sep 19; Vol. 57 (37), pp. 13744-13756. Date of Electronic Publication: 2023 Sep 07.
Typ publikacji:
Journal Article
MeSH Terms:
Dibutyl Phthalate*
Transcriptome*
Humans ; Animals ; Zebrafish ; Esters
Czasopismo naukowe
Szczegóły
Tytuł:
Physiological, metabolomic, and transcriptomic reveal metabolic pathway alterations in Gymnocypris przewalskii due to cold exposure.
Autorzy:
Liu S; Qinghai Provincial Key Laboratory of Animal Ecological Genomics, Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, No. 23 Xinning Road, Xining, 810008, Qinghai, China.
Tian F; Qinghai Provincial Key Laboratory of Animal Ecological Genomics, Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, No. 23 Xinning Road, Xining, 810008, Qinghai, China.
Qi D; State Key Laboratory of Plateau Ecology and Agriculture, Qinghai University, Xining, Qinghai, China.
Qi H; Qinghai Provincial Key Laboratory of Breeding and Protection of Gymnocypris Przewalskii, Qinghai Naked Carp Rescue Center, Xining, Qinghai, China.
Wang Y; Qinghai Provincial Key Laboratory of Breeding and Protection of Gymnocypris Przewalskii, Qinghai Naked Carp Rescue Center, Xining, Qinghai, China.
Xu S; Qinghai Provincial Key Laboratory of Animal Ecological Genomics, Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, No. 23 Xinning Road, Xining, 810008, Qinghai, China. .
Zhao K; Qinghai Provincial Key Laboratory of Animal Ecological Genomics, Key Laboratory of Adaptation and Evolution of Plateau Biota, Northwest Institute of Plateau Biology, Chinese Academy of Sciences, No. 23 Xinning Road, Xining, 810008, Qinghai, China. .
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Źródło:
BMC genomics [BMC Genomics] 2023 Sep 14; Vol. 24 (1), pp. 545. Date of Electronic Publication: 2023 Sep 14.
Typ publikacji:
Journal Article
MeSH Terms:
Transcriptome*
Cyprinidae*
Animals ; Chromatography, Liquid ; Tandem Mass Spectrometry ; Metabolomics ; Metabolic Networks and Pathways/genetics
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Combining single-cell RNA sequencing with spatial transcriptome analysis reveals dynamic molecular maps of cambium differentiation in the primary and secondary growth of trees.
Autorzy:
Li R; National Key Laboratory of Plant Molecular Genetics and CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China; University of the Chinese Academy of Sciences, Beijing 100049, China.
Wang Z; National Key Laboratory of Plant Molecular Genetics and CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China.
Wang JW; National Key Laboratory of Plant Molecular Genetics and CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China; School of Life Science and Technology, ShanghaiTech University, Shanghai 201210, China.
Li L; National Key Laboratory of Plant Molecular Genetics and CAS Center for Excellence in Molecular Plant Sciences, Institute of Plant Physiology and Ecology, Chinese Academy of Sciences, Shanghai 200032, China. Electronic address: .
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Źródło:
Plant communications [Plant Commun] 2023 Sep 11; Vol. 4 (5), pp. 100665. Date of Electronic Publication: 2023 Jul 24.
Typ publikacji:
Journal Article
MeSH Terms:
Transcriptome*
Cambium*/genetics
Trees/genetics ; Gene Expression Profiling ; Cell Differentiation/genetics ; Sequence Analysis, RNA
Czasopismo naukowe
Szczegóły
Tytuł:
Multi-tissue transcriptomic and serum metabolomic assessment reveals systemic implications of acute ozone-induced stress response in male Wistar Kyoto rats.
Autorzy:
Jackson TW; Public Health and Integrated Toxicology Division, Center for Public Health and Environmental Assessment, U.S. Environmental Protection Agency, Research Triangle Park, NC, 27711, USA. .; Oak Ridge Institute for Science and Education Research Participation Program, U.S. Environmental Protection Agency, Research Triangle Park, NC, 27711, USA. .
House JS; Division of Intramural Research, National Institute of Environmental Health Sciences, Department of Health and Human Services, National Institutes of Health, Research Triangle Park, NC, 27709, USA.
Henriquez AR; Public Health and Integrated Toxicology Division, Center for Public Health and Environmental Assessment, U.S. Environmental Protection Agency, Research Triangle Park, NC, 27711, USA.; Environmental Health Science and Research Bureau, Health Canada, Ottawa, ON, K1A 0K9, Canada.
Schladweiler MC; Public Health and Integrated Toxicology Division, Center for Public Health and Environmental Assessment, U.S. Environmental Protection Agency, Research Triangle Park, NC, 27711, USA.
Jackson KM; Metabolon, Inc, 617 Davis Dr Suite 100, Morrisville, NC, 27560, USA.
Fisher AA; Public Health and Integrated Toxicology Division, Center for Public Health and Environmental Assessment, U.S. Environmental Protection Agency, Research Triangle Park, NC, 27711, USA.
Snow SJ; Public Health and Integrated Toxicology Division, Center for Public Health and Environmental Assessment, U.S. Environmental Protection Agency, Research Triangle Park, NC, 27711, USA.; ICF, Durham, NC, USA.
Alewel DI; Oak Ridge Institute for Science and Education Research Participation Program, U.S. Environmental Protection Agency, Research Triangle Park, NC, 27711, USA.
Motsinger-Reif AA; Oak Ridge Institute for Science and Education Research Participation Program, U.S. Environmental Protection Agency, Research Triangle Park, NC, 27711, USA.
Kodavanti UP; Public Health and Integrated Toxicology Division, Center for Public Health and Environmental Assessment, U.S. Environmental Protection Agency, Research Triangle Park, NC, 27711, USA.
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Źródło:
Metabolomics : Official journal of the Metabolomic Society [Metabolomics] 2023 Sep 10; Vol. 19 (9), pp. 81. Date of Electronic Publication: 2023 Sep 10.
Typ publikacji:
Journal Article
MeSH Terms:
Transcriptome*
Metabolomics*
Male ; Rats ; Animals ; Rats, Inbred WKY ; Gene Expression Profiling ; Muscles
Czasopismo naukowe
Szczegóły
Tytuł:
Erythritol alters gene transcriptome signatures, cell growth, and biofilm formation in Staphylococcus pseudintermedius.
Autorzy:
Fujii T; Research & Development Center, B Food Science Co., Ltd., Aichi, Japan. .; Department of Gastroenterology and Hepatology, Fujita Health University, Aichi, Japan. .
Tochio T; Research & Development Center, B Food Science Co., Ltd., Aichi, Japan.; Department of Gastroenterology and Hepatology, Fujita Health University, Aichi, Japan.
Nishifuji K; Division of Animal Life Science, Institute of Agriculture, Tokyo University of Agriculture and Technology, Tokyo, Japan.
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Źródło:
BMC veterinary research [BMC Vet Res] 2023 Sep 07; Vol. 19 (1), pp. 146. Date of Electronic Publication: 2023 Sep 07.
Typ publikacji:
Journal Article
MeSH Terms:
Transcriptome*
Erythritol*/pharmacology
Animals ; Cell Proliferation ; Biofilms
SCR Organism:
Staphylococcus pseudintermedius
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Comparative transcriptomes reveal geographic differences in the ability of the liver of plateau zokors (Eospalax baileyi) to respond and adapt to toxic plants.
Autorzy:
Tan Y; College of Grassland Science, Key Laboratory of Grassland Ecosystem (Ministry of Education), Gansu Agricultural University, Lanzhou, 730070, China.; Gansu Agricultural University-Massey University Research Centre for Grassland Biodiversity, Gansu Agricultural University, Lanzhou, 730070, China.
Wang Y; College of Grassland Science, Key Laboratory of Grassland Ecosystem (Ministry of Education), Gansu Agricultural University, Lanzhou, 730070, China.; Gansu Agricultural University-Massey University Research Centre for Grassland Biodiversity, Gansu Agricultural University, Lanzhou, 730070, China.
Liu Q; College of Grassland Science, Key Laboratory of Grassland Ecosystem (Ministry of Education), Gansu Agricultural University, Lanzhou, 730070, China.; Gansu Agricultural University-Massey University Research Centre for Grassland Biodiversity, Gansu Agricultural University, Lanzhou, 730070, China.
Wang Z; College of Grassland Science, Key Laboratory of Grassland Ecosystem (Ministry of Education), Gansu Agricultural University, Lanzhou, 730070, China.; Gansu Agricultural University-Massey University Research Centre for Grassland Biodiversity, Gansu Agricultural University, Lanzhou, 730070, China.
Shi S; College of Grassland Science, Key Laboratory of Grassland Ecosystem (Ministry of Education), Gansu Agricultural University, Lanzhou, 730070, China.; Gansu Agricultural University-Massey University Research Centre for Grassland Biodiversity, Gansu Agricultural University, Lanzhou, 730070, China.
Su J; College of Grassland Science, Key Laboratory of Grassland Ecosystem (Ministry of Education), Gansu Agricultural University, Lanzhou, 730070, China. .; Gansu Agricultural University-Massey University Research Centre for Grassland Biodiversity, Gansu Agricultural University, Lanzhou, 730070, China. .
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Źródło:
BMC genomics [BMC Genomics] 2023 Sep 06; Vol. 24 (1), pp. 529. Date of Electronic Publication: 2023 Sep 06.
Typ publikacji:
Journal Article
MeSH Terms:
Plants, Toxic*
Transcriptome*
Liver ; Gene Expression Profiling ; Acclimatization
Czasopismo naukowe
Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
Tytuł:
Transcriptomic Responses to Nitrite Degradation by Limosilactobacillus fermentum RC4 and Effect of ndh Gene Overexpression on Nitrite Degradation.
Autorzy:
Shi J; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Ningbo 315211, China.; Key Laboratory of Animal Protein Food Processing Technology of Zhejiang Province, College of Food and Pharmaceutical Sciences, Ningbo University, Ningbo 315800, China.
Che J; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Ningbo 315211, China.; Key Laboratory of Animal Protein Food Processing Technology of Zhejiang Province, College of Food and Pharmaceutical Sciences, Ningbo University, Ningbo 315800, China.
Sun X; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Ningbo 315211, China.; Key Laboratory of Animal Protein Food Processing Technology of Zhejiang Province, College of Food and Pharmaceutical Sciences, Ningbo University, Ningbo 315800, China.
Zeng X; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Ningbo 315211, China.; Key Laboratory of Animal Protein Food Processing Technology of Zhejiang Province, College of Food and Pharmaceutical Sciences, Ningbo University, Ningbo 315800, China.
Du Q; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Ningbo 315211, China.; Key Laboratory of Animal Protein Food Processing Technology of Zhejiang Province, College of Food and Pharmaceutical Sciences, Ningbo University, Ningbo 315800, China.
Guo Y; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Ningbo 315211, China.; School of Food Science and Pharmaceutical Engineering, Nanjing Normal University, Nanjing 210097, China.
Wu Z; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Ningbo 315211, China.; Key Laboratory of Animal Protein Food Processing Technology of Zhejiang Province, College of Food and Pharmaceutical Sciences, Ningbo University, Ningbo 315800, China.
Pan D; State Key Laboratory for Managing Biotic and Chemical Threats to the Quality and Safety of Agro-products, Ningbo 315211, China.; Key Laboratory of Animal Protein Food Processing Technology of Zhejiang Province, College of Food and Pharmaceutical Sciences, Ningbo University, Ningbo 315800, China.
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Źródło:
Journal of agricultural and food chemistry [J Agric Food Chem] 2023 Sep 06; Vol. 71 (35), pp. 13156-13164. Date of Electronic Publication: 2023 Aug 25.
Typ publikacji:
Journal Article
MeSH Terms:
Transcriptome*
Limosilactobacillus fermentum*/metabolism
Nitrites/metabolism ; Iron/metabolism ; Oxidation-Reduction ; Carbohydrate Metabolism ; Nitrogen/metabolism ; Signal Transduction
Czasopismo naukowe
Szczegóły
Tytuł:
Integrative analysis of metabolome and transcriptome reveals the different metabolite biosynthesis profiles related to palatability in winter and spring shoot in moso bamboo.
Autorzy:
Wang X; State Key Laboratory of Efficient Production of Forest Resources, National Engineering Research Center of Tree Breeding and Ecological Restoration, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China; School of Life Science, Peking University, Beijing, 100871, China. Electronic address: .
Yang L; Guizhou Provincial Key Laboratory for Biodiversity Conservation and Utilization in the Fanjing Mountain Region, Tongren University, Guizhou, 554300, China. Electronic address: .
Geng X; State Key Laboratory of Efficient Production of Forest Resources, National Engineering Research Center of Tree Breeding and Ecological Restoration, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China. Electronic address: .
Shi W; State Key Laboratory of Efficient Production of Forest Resources, National Engineering Research Center of Tree Breeding and Ecological Restoration, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China. Electronic address: .
Chen Y; State Key Laboratory of Efficient Production of Forest Resources, National Engineering Research Center of Tree Breeding and Ecological Restoration, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China. Electronic address: .
Lu C; State Key Laboratory of Efficient Production of Forest Resources, National Engineering Research Center of Tree Breeding and Ecological Restoration, College of Biological Sciences and Biotechnology, Beijing Forestry University, Beijing, 100083, China. Electronic address: .
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Źródło:
Plant physiology and biochemistry : PPB [Plant Physiol Biochem] 2023 Sep; Vol. 202, pp. 107973. Date of Electronic Publication: 2023 Aug 16.
Typ publikacji:
Journal Article
MeSH Terms:
Transcriptome*/genetics
Metabolome*
Seasons ; Poaceae ; Tannins ; Uridine Diphosphate
Czasopismo naukowe
Szczegóły
Tytuł:
Transcriptome-based nutrigenomics analysis reveals the roles of dietary taurine in the muscle growth of juvenile turbot (Scophthalmus maximus).
Autorzy:
Hays H; The Key Laboratory of Aquaculture Nutrition and Feeds, Ministry of Agriculture and Rural Affairs, The Key Laboratory of Mariculture (Ministry of Education), Fisheries College, Ocean University of China, Qingdao 266003, PR China; Department of Chemical Engineering, University of Arkansas, Fayetteville, AR 72701, USA; Institute of Biochemistry, Molecular Biology & Biotechnology (IBMBB), University of Colombo, 90, Cumaratunga Munidasa Mawatha, Colombo 03, Sri Lanka. Electronic address: https://twitter.com/hasihays.
Gu Z; The Key Laboratory of Aquaculture Nutrition and Feeds, Ministry of Agriculture and Rural Affairs, The Key Laboratory of Mariculture (Ministry of Education), Fisheries College, Ocean University of China, Qingdao 266003, PR China.
Mai K; The Key Laboratory of Aquaculture Nutrition and Feeds, Ministry of Agriculture and Rural Affairs, The Key Laboratory of Mariculture (Ministry of Education), Fisheries College, Ocean University of China, Qingdao 266003, PR China.
Zhang W; The Key Laboratory of Aquaculture Nutrition and Feeds, Ministry of Agriculture and Rural Affairs, The Key Laboratory of Mariculture (Ministry of Education), Fisheries College, Ocean University of China, Qingdao 266003, PR China. Electronic address: .
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Źródło:
Comparative biochemistry and physiology. Part D, Genomics & proteomics [Comp Biochem Physiol Part D Genomics Proteomics] 2023 Sep; Vol. 47, pp. 101120. Date of Electronic Publication: 2023 Aug 14.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Transcriptome*
Flatfishes*/genetics
Animals ; Nutrigenomics ; Muscles ; Diet
Czasopismo naukowe
Szczegóły
Tytuł:
De novo assembly, characterization and comparative transcriptome analysis of gonads reveals sex-biased genes in Coreoperca whiteheadi.
Autorzy:
Liu S; State Key Laboratory of Biocontrol and School of Life Sciences, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Guangdong Provincial Key Laboratory for Aquatic Economic Animals and Guangdong Provincial Engineering Technology Research Center for Healthy Breeding of Important Economic Fish, Sun Yat-Sen University, Guangzhou, 510275, China; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266373, China.
Han C; School of Life Sciences, Guangzhou University, Guangzhou 510006, China. Electronic address: .
Zhang Y; State Key Laboratory of Biocontrol and School of Life Sciences, Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Guangdong Provincial Key Laboratory for Aquatic Economic Animals and Guangdong Provincial Engineering Technology Research Center for Healthy Breeding of Important Economic Fish, Sun Yat-Sen University, Guangzhou, 510275, China; Laboratory for Marine Fisheries Science and Food Production Processes, Qingdao National Laboratory for Marine Science and Technology, Qingdao 266373, China. Electronic address: .
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Źródło:
Comparative biochemistry and physiology. Part D, Genomics & proteomics [Comp Biochem Physiol Part D Genomics Proteomics] 2023 Sep; Vol. 47, pp. 101115. Date of Electronic Publication: 2023 Aug 05.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Transcriptome*
Gonads*/metabolism
Female ; Male ; Animals ; Gene Expression Profiling ; Ovary/metabolism ; Testis/metabolism ; Fishes/genetics
Czasopismo naukowe
Szczegóły
Tytuł:
Integrated metabolomics and transcriptomics analysis reveals that the change of apoplast metabolites contributes to adaptation to winter freezing stress in Euonymus japonicus.
Autorzy:
Liu Q; Laboratory of Mass Spectrometry Imaging and Metabolomics (Minzu University of China), National Ethnic Affairs Commission, Beijing, 100081, China; Key Laboratory of Ecology and Environment in Minority Areas (Minzu University of China), National Ethnic Affairs Commission, Beijing, 100081, China; College of Life and Environmental Sciences, Minzu University of China, Beijing, 100081, China.
Zhang Y; Laboratory of Mass Spectrometry Imaging and Metabolomics (Minzu University of China), National Ethnic Affairs Commission, Beijing, 100081, China; Key Laboratory of Ecology and Environment in Minority Areas (Minzu University of China), National Ethnic Affairs Commission, Beijing, 100081, China; College of Life and Environmental Sciences, Minzu University of China, Beijing, 100081, China.
Dong X; Laboratory of Mass Spectrometry Imaging and Metabolomics (Minzu University of China), National Ethnic Affairs Commission, Beijing, 100081, China; Key Laboratory of Ecology and Environment in Minority Areas (Minzu University of China), National Ethnic Affairs Commission, Beijing, 100081, China; College of Life and Environmental Sciences, Minzu University of China, Beijing, 100081, China.
Zheng L; Laboratory of Mass Spectrometry Imaging and Metabolomics (Minzu University of China), National Ethnic Affairs Commission, Beijing, 100081, China; Key Laboratory of Ecology and Environment in Minority Areas (Minzu University of China), National Ethnic Affairs Commission, Beijing, 100081, China; College of Life and Environmental Sciences, Minzu University of China, Beijing, 100081, China.
Zhou Y; Laboratory of Mass Spectrometry Imaging and Metabolomics (Minzu University of China), National Ethnic Affairs Commission, Beijing, 100081, China; Key Laboratory of Ecology and Environment in Minority Areas (Minzu University of China), National Ethnic Affairs Commission, Beijing, 100081, China; College of Life and Environmental Sciences, Minzu University of China, Beijing, 100081, China.
Gao F; Laboratory of Mass Spectrometry Imaging and Metabolomics (Minzu University of China), National Ethnic Affairs Commission, Beijing, 100081, China; Key Laboratory of Ecology and Environment in Minority Areas (Minzu University of China), National Ethnic Affairs Commission, Beijing, 100081, China; College of Life and Environmental Sciences, Minzu University of China, Beijing, 100081, China. Electronic address: .
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Źródło:
Plant physiology and biochemistry : PPB [Plant Physiol Biochem] 2023 Sep; Vol. 202, pp. 107924. Date of Electronic Publication: 2023 Aug 01.
Typ publikacji:
Journal Article
MeSH Terms:
Transcriptome*/genetics
Euonymus*/genetics
Freezing ; Gene Expression Profiling ; Metabolomics ; Gene Expression Regulation, Plant
Czasopismo naukowe
Szczegóły
Tytuł:
Hepatic transcriptomic analysis reveals that Hif1α/ldha signal is involved in the regulation of hypoxia stress in black rockfish Sebastes schlegelii.
Autorzy:
Qin H; Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao Key Laboratory for Marine Fish Breeding and Biotechnology, Qingdao 266071, China.
Zhang X; Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao Key Laboratory for Marine Fish Breeding and Biotechnology, Qingdao 266071, China.
Xie T; Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao Key Laboratory for Marine Fish Breeding and Biotechnology, Qingdao 266071, China.
Gao Y; Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao Key Laboratory for Marine Fish Breeding and Biotechnology, Qingdao 266071, China.
Li J; Qingdao Agricultural University, Qingdao 266109, China.
Jia Y; Yellow Sea Fisheries Research Institute, Chinese Academy of Fishery Sciences, Qingdao Key Laboratory for Marine Fish Breeding and Biotechnology, Qingdao 266071, China; Qingdao National Laboratory for Marine Science and Technology, Qingdao 266237, China. Electronic address: .
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Źródło:
Comparative biochemistry and physiology. Part D, Genomics & proteomics [Comp Biochem Physiol Part D Genomics Proteomics] 2023 Sep; Vol. 47, pp. 101098. Date of Electronic Publication: 2023 May 18.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Transcriptome*
Perciformes*/genetics
Perciformes*/metabolism
Humans ; Animals ; Hypoxia/genetics ; Real-Time Polymerase Chain Reaction ; China
Czasopismo naukowe
Szczegóły
Tytuł:
Transcriptome network analysis links perinatal Staphylococcus epidermidis infection to microglia reprogramming in the immature hippocampus.
Autorzy:
Gravina G; Institute of Neuroscience and Physiology, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
Ardalan M; Institute of Neuroscience and Physiology, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.; Translational Neuropsychiatric Unit, Department of Clinical Medicine, Aarhus University, Aarhus, Denmark.
Chumak T; Institute of Neuroscience and Physiology, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
Rydbeck H; Institute of Neuroscience and Physiology, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.; The Bioinformatics Core Facility, University of Gothenburg, Gothenburg, Sweden.
Wang X; Institute of Neuroscience and Physiology, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
Ek CJ; Institute of Neuroscience and Physiology, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
Mallard C; Institute of Neuroscience and Physiology, Sahlgrenska Academy, University of Gothenburg, Gothenburg, Sweden.
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Źródło:
Glia [Glia] 2023 Sep; Vol. 71 (9), pp. 2234-2249. Date of Electronic Publication: 2023 May 29.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Transcriptome*
Staphylococcal Infections*/metabolism
Infant, Newborn ; Animals ; Humans ; Mice ; Staphylococcus epidermidis/genetics ; Microglia/metabolism ; Staphylococcus aureus/physiology ; Mice, Inbred NOD ; Infant, Premature ; Hippocampus/metabolism
Czasopismo naukowe
Szczegóły
Tytuł:
Identifying Novel Drug Targets for Epilepsy Through a Brain Transcriptome-Wide Association Study and Protein-Wide Association Study with Chemical-Gene-Interaction Analysis.
Autorzy:
Lu M; Department of Pediatrics, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, 710054, Shanxi, China.
Feng R; Department of Joint Surgery, HongHui Hospital, Xi'an Jiaotong University, Xi'an, 710054, Shanxi, China.
Zhang C; Department of Pediatrics, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, 710054, Shanxi, China.
Xiao Y; Department of Pediatrics, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, 710054, Shanxi, China. .
Yin C; Department of Pediatrics, The Second Affiliated Hospital of Xi'an Jiaotong University, Xi'an, 710054, Shanxi, China. .
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Źródło:
Molecular neurobiology [Mol Neurobiol] 2023 Sep; Vol. 60 (9), pp. 5055-5066. Date of Electronic Publication: 2023 May 29.
Typ publikacji:
Journal Article
MeSH Terms:
Transcriptome*/genetics
Epilepsy*/genetics
Humans ; Gene Expression Profiling/methods ; Genome-Wide Association Study/methods ; Brain ; Genetic Predisposition to Disease ; Polymorphism, Single Nucleotide ; Cytoskeletal Proteins/genetics ; Intracellular Signaling Peptides and Proteins/genetics ; Trans-Activators/genetics
Czasopismo naukowe
Szczegóły
Tytuł:
Comparative transcriptome analysis of gonads in male and female Pseudobagrus ussuriensis (Bagridae, Siluriformes).
Autorzy:
Wang L; Jiangsu Engineering Laboratory for Breeding of Special Aquatic Organisms, Huai'yin Normal University, Huai'an 223300, China; National Demonstration Center for Experimental Fisheries Science Education, Shanghai Ocean University, Shanghai 201306, China; Key Laboratory of Freshwater Aquatic Genetic Resources, Ministry of Agriculture, Shanghai Ocean University, Shanghai 201306, China.
Guan T; Jiangsu Engineering Laboratory for Breeding of Special Aquatic Organisms, Huai'yin Normal University, Huai'an 223300, China; National Demonstration Center for Experimental Fisheries Science Education, Shanghai Ocean University, Shanghai 201306, China; Key Laboratory of Freshwater Aquatic Genetic Resources, Ministry of Agriculture, Shanghai Ocean University, Shanghai 201306, China.
Gu J; Jiangsu Engineering Laboratory for Breeding of Special Aquatic Organisms, Huai'yin Normal University, Huai'an 223300, China.
Zhu C; Jiangsu Engineering Laboratory for Breeding of Special Aquatic Organisms, Huai'yin Normal University, Huai'an 223300, China.
Pan Z; Jiangsu Engineering Laboratory for Breeding of Special Aquatic Organisms, Huai'yin Normal University, Huai'an 223300, China.
Wang H; Jiangsu Engineering Laboratory for Breeding of Special Aquatic Organisms, Huai'yin Normal University, Huai'an 223300, China. Electronic address: .
Li J; National Demonstration Center for Experimental Fisheries Science Education, Shanghai Ocean University, Shanghai 201306, China; Key Laboratory of Freshwater Aquatic Genetic Resources, Ministry of Agriculture, Shanghai Ocean University, Shanghai 201306, China.
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Źródło:
Comparative biochemistry and physiology. Part D, Genomics & proteomics [Comp Biochem Physiol Part D Genomics Proteomics] 2023 Sep; Vol. 47, pp. 101105. Date of Electronic Publication: 2023 Jun 19.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Transcriptome*
Catfishes*/genetics
Female ; Male ; Animals ; Gonads/metabolism ; Gene Expression Profiling ; RNA-Seq
Czasopismo naukowe
Szczegóły
Tytuł:
Transcriptome-based analyses reveal venom diversity in two araneomorph spiders, Psechrus triangulus and Hippasa lycosina.
Autorzy:
Yin WH; Yunnan Provincial Key Laboratory of Entomological Biopharmaceutical R & D, Dali University, Dali 671000, China; National-Local Joint Engineering Research Center of Entomoceutics, Dali University, Dali 671000, China.
You YM; Yunnan Provincial Key Laboratory of Entomological Biopharmaceutical R & D, Dali University, Dali 671000, China; National-Local Joint Engineering Research Center of Entomoceutics, Dali University, Dali 671000, China.
Tembrock LR; Department of Agricultural Biology, Colorado State University, Fort Collins, CO 80523, USA.
Ding LJ; Yunnan Provincial Key Laboratory of Entomological Biopharmaceutical R & D, Dali University, Dali 671000, China; National-Local Joint Engineering Research Center of Entomoceutics, Dali University, Dali 671000, China.
Zhang CG; Yunnan Provincial Key Laboratory of Entomological Biopharmaceutical R & D, Dali University, Dali 671000, China; National-Local Joint Engineering Research Center of Entomoceutics, Dali University, Dali 671000, China.
Zhao Y; Yunnan Provincial Key Laboratory of Entomological Biopharmaceutical R & D, Dali University, Dali 671000, China; National-Local Joint Engineering Research Center of Entomoceutics, Dali University, Dali 671000, China. Electronic address: .
Yang ZZ; Yunnan Provincial Key Laboratory of Entomological Biopharmaceutical R & D, Dali University, Dali 671000, China; National-Local Joint Engineering Research Center of Entomoceutics, Dali University, Dali 671000, China. Electronic address: .
Pokaż więcej
Źródło:
Comparative biochemistry and physiology. Part D, Genomics & proteomics [Comp Biochem Physiol Part D Genomics Proteomics] 2023 Sep; Vol. 47, pp. 101101. Date of Electronic Publication: 2023 Jun 12.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Transcriptome*
Spider Venoms*/genetics
Spider Venoms*/chemistry
Animals ; Neurotoxins ; Acetylcholinesterase/genetics ; Acetylcholinesterase/metabolism ; China
Czasopismo naukowe
Szczegóły
Tytuł:
Profiling transcriptomic responses of human stem cell-derived medium spiny neuron-like cells to exogenous phasic and tonic neurotransmitters.
Autorzy:
Tam RW; Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC 27606, United States of America.
Keung AJ; Department of Chemical and Biomolecular Engineering, North Carolina State University, Raleigh, NC 27606, United States of America. Electronic address: .
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Źródło:
Molecular and cellular neurosciences [Mol Cell Neurosci] 2023 Sep; Vol. 126, pp. 103876. Date of Electronic Publication: 2023 Jun 28.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Dopamine*/metabolism
Transcriptome*
Humans ; Medium Spiny Neurons ; Neurons/metabolism ; Stem Cells/metabolism ; Cell Differentiation
Czasopismo naukowe
Szczegóły
Tytuł:
Comprehensive Transcriptome and Metabolome Analyses Reveal Primary Molecular Regulation Pathways Involved in Peanut under Water and Nitrogen Co-Limitation.
Autorzy:
Ding H; Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences, Qingdao 266100, China.
Dai L; Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences, Qingdao 266100, China.
Guo Q; Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences, Qingdao 266100, China.
Chen X; Peanut Research Institute, Jilin Academy of Agricultural Sciences, Gongzhuling 136100, China.
Zhang G; Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences, Qingdao 266100, China.
Feng H; Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences, Qingdao 266100, China.
Qin F; Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences, Qingdao 266100, China.
Gao H; Peanut Research Institute, Jilin Academy of Agricultural Sciences, Gongzhuling 136100, China.
Xu Y; Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences, Qingdao 266100, China.
Zhang Z; Shandong Peanut Research Institute, Shandong Academy of Agricultural Sciences, Qingdao 266100, China.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2023 Aug 27; Vol. 24 (17). Date of Electronic Publication: 2023 Aug 27.
Typ publikacji:
Journal Article
MeSH Terms:
Arachis*/genetics
Transcriptome*
Metabolome ; Gene Expression Profiling ; Amino Acids ; Nitrogen
Czasopismo naukowe
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