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Wyszukujesz frazę ""Whole Genome Sequencing"" wg kryterium: Temat


Tytuł :
Phenotype-Based Threat Assessment.
Autorzy :
Yang J; Department of Microbial Pathogenesis and Immunology, Texas A&M Health Science Center, Bryan, TX 77807.
Eslami M; Netrias, LLC, Cambridge, MA 02142.
Chen YP; Netrias, LLC, Cambridge, MA 02142.
Das M; Department of Microbial Pathogenesis and Immunology, Texas A&M Health Science Center, Bryan, TX 77807.
Zhang D; Department of Microbial Pathogenesis and Immunology, Texas A&M Health Science Center, Bryan, TX 77807.
Chen S; Department of Microbial Pathogenesis and Immunology, Texas A&M Health Science Center, Bryan, TX 77807.
Roberts AJ; Department of Microbial Pathogenesis and Immunology, Texas A&M Health Science Center, Bryan, TX 77807.
Weston M; Netrias, LLC, Cambridge, MA 02142.
Volkova A; Netrias, LLC, Cambridge, MA 02142.
Faghihi K; Netrias, LLC, Cambridge, MA 02142.
Moore RK; Department of Microbial Pathogenesis and Immunology, Texas A&M Health Science Center, Bryan, TX 77807.
Alaniz RC; Department of Microbial Pathogenesis and Immunology, Texas A&M Health Science Center, Bryan, TX 77807.
Wattam AR; Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA 22904.
Dickerman A; Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA 22904.
Cucinell C; Biocomplexity Institute and Initiative, University of Virginia, Charlottesville, VA 22904.
Kendziorski J; Department of Microbial Pathogenesis and Immunology, Texas A&M Health Science Center, Bryan, TX 77807.
Coburn S; Department of Microbial Pathogenesis and Immunology, Texas A&M Health Science Center, Bryan, TX 77807.
Paterson H; Department of Microbial Pathogenesis and Immunology, Texas A&M Health Science Center, Bryan, TX 77807.
Obanor O; Department of Microbial Pathogenesis and Immunology, Texas A&M Health Science Center, Bryan, TX 77807.
Maples J; Department of Microbial Pathogenesis and Immunology, Texas A&M Health Science Center, Bryan, TX 77807.
Servetas S; Complex Microbial Systems Group, Biomaterials and Biosystems Division, Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD 20899.
Dootz J; Complex Microbial Systems Group, Biomaterials and Biosystems Division, Material Measurement Laboratory, National Institute of Standards and Technology, Gaithersburg, MD 20899.
Qin QM; Department of Microbial Pathogenesis and Immunology, Texas A&M Health Science Center, Bryan, TX 77807.
Samuel JE; Department of Microbial Pathogenesis and Immunology, Texas A&M Health Science Center, Bryan, TX 77807.
Han A; Department of Electrical and Computer Engineering, Texas A&M University, College Station, TX 77843.; Department of Biomedical Engineering, Texas A&M University, College Station,TX 77843.
van Schaik EJ; Department of Microbial Pathogenesis and Immunology, Texas A&M Health Science Center, Bryan, TX 77807.
de Figueiredo P; Department of Microbial Pathogenesis and Immunology, Texas A&M Health Science Center, Bryan, TX 77807.; Department of Veterinary Pathobiology, Texas A&M University, College Station, TX 77843.
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Źródło :
Proceedings of the National Academy of Sciences of the United States of America [Proc Natl Acad Sci U S A] 2022 Apr 05; Vol. 119 (14), pp. e2112886119. Date of Electronic Publication: 2022 Apr 01.
Typ publikacji :
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Bacteria*/genetics
Bacteria*/pathogenicity
Genome, Bacterial*
Machine Learning*
Virulence Factors*/genetics
Whole Genome Sequencing*
Phenotype ; Virulence/genetics
Czasopismo naukowe
Tytuł :
The Impact of Real-Time Whole-Genome Sequencing in Controlling Healthcare-Associated SARS-CoV-2 Outbreaks.
Autorzy :
Francis RV; Department of Clinical Microbiology, Nottingham University Hospitals NHS Trust, Nottingham, United Kingdom.
Billam H; Department of Clinical Microbiology, Nottingham University Hospitals NHS Trust, Nottingham, United Kingdom.
Clarke M; Department of Clinical Microbiology, Nottingham University Hospitals NHS Trust, Nottingham, United Kingdom.
Yates C; Department of Clinical Microbiology, Nottingham University Hospitals NHS Trust, Nottingham, United Kingdom.
Tsoleridis T; School of Life Sciences, University of Nottingham, Nottingham, United Kingdom.; National Institute for Health Research Nottingham Biomedical Research Centre, University of Nottingham, Nottingham, United Kingdom.; Wolfson Centre for Emerging Virus Research, University of Nottingham, Nottingham, United Kingdom.
Berry L; Department of Clinical Microbiology, Nottingham University Hospitals NHS Trust, Nottingham, United Kingdom.
Mahida N; Department of Clinical Microbiology, Nottingham University Hospitals NHS Trust, Nottingham, United Kingdom.
Irving WL; Department of Clinical Microbiology, Nottingham University Hospitals NHS Trust, Nottingham, United Kingdom.; School of Life Sciences, University of Nottingham, Nottingham, United Kingdom.; National Institute for Health Research Nottingham Biomedical Research Centre, University of Nottingham, Nottingham, United Kingdom.; Wolfson Centre for Emerging Virus Research, University of Nottingham, Nottingham, United Kingdom.
Moore C; School of Life Sciences, University of Nottingham, Nottingham, United Kingdom.
Holmes N; School of Life Sciences, University of Nottingham, Nottingham, United Kingdom.
Ball JK; School of Life Sciences, University of Nottingham, Nottingham, United Kingdom.; National Institute for Health Research Nottingham Biomedical Research Centre, University of Nottingham, Nottingham, United Kingdom.; Wolfson Centre for Emerging Virus Research, University of Nottingham, Nottingham, United Kingdom.
Loose M; School of Life Sciences, University of Nottingham, Nottingham, United Kingdom.
McClure CP; School of Life Sciences, University of Nottingham, Nottingham, United Kingdom.; National Institute for Health Research Nottingham Biomedical Research Centre, University of Nottingham, Nottingham, United Kingdom.; Wolfson Centre for Emerging Virus Research, University of Nottingham, Nottingham, United Kingdom.
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Corporate Authors :
COVID-19 Genomics UK (COG-UK) consortium
Źródło :
The Journal of infectious diseases [J Infect Dis] 2022 Jan 05; Vol. 225 (1), pp. 10-18.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
COVID-19*
Cross Infection*/epidemiology
Whole Genome Sequencing*
Disease Outbreaks/*prevention & control
Reverse Transcriptase Polymerase Chain Reaction/*methods
Asymptomatic Infections ; Delivery of Health Care ; Health Personnel ; Humans ; Personal Protective Equipment ; Phylogeny ; SARS-CoV-2
Czasopismo naukowe
Tytuł :
Mutation Mapping and Identification by Whole-Genome Sequencing.
Autorzy :
Smith HE; National Institute of Diabetes and Digestive and Kidney Diseases, National Institutes of Health, Bethesda, MD, USA. .
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Źródło :
Methods in molecular biology (Clifton, N.J.) [Methods Mol Biol] 2022; Vol. 2468, pp. 257-269.
Typ publikacji :
Journal Article
MeSH Terms :
Caenorhabditis elegans*/genetics
DNA Mutational Analysis*/methods
High-Throughput Nucleotide Sequencing*/methods
Whole Genome Sequencing*
Animals ; Mutation
Czasopismo naukowe
Tytuł :
Detection of Minority Variants and Mixed Infections in Mycobacterium tuberculosis by Direct Whole-Genome Sequencing on Noncultured Specimens Using a Specific-DNA Capture Strategy.
Autorzy :
Lozano N; Instituto de Investigación Sanitaria Gregorio Marañón, Madrid, Spain.; Servicio de Microbiología Clínica y Enfermedades Infecciosas, Hospital General Universitario Gregorio Marañóngrid.410526.4, Madrid, Spain.
Lanza VF; Bioinformatics Unit IRYCIS, University Hospital Ramón y Cajal, Madrid, Spain.; CIBER Enfermedades Infecciosas, Madrid, Spain.
Suárez-González J; Instituto de Investigación Sanitaria Gregorio Marañón, Madrid, Spain.; Unidad de Genómica, Hospital General Universitario Gregorio Marañóngrid.410526.4, Madrid, Spain.
Herranz M; Instituto de Investigación Sanitaria Gregorio Marañón, Madrid, Spain.; Servicio de Microbiología Clínica y Enfermedades Infecciosas, Hospital General Universitario Gregorio Marañóngrid.410526.4, Madrid, Spain.; CIBER Enfermedades Respiratorias, CIBERES, Madrid, Spain.
Sola-Campoy PJ; Instituto de Investigación Sanitaria Gregorio Marañón, Madrid, Spain.; Servicio de Microbiología Clínica y Enfermedades Infecciosas, Hospital General Universitario Gregorio Marañóngrid.410526.4, Madrid, Spain.
Rodríguez-Grande C; Instituto de Investigación Sanitaria Gregorio Marañón, Madrid, Spain.; Servicio de Microbiología Clínica y Enfermedades Infecciosas, Hospital General Universitario Gregorio Marañóngrid.410526.4, Madrid, Spain.
Buenestado-Serrano S; Instituto de Investigación Sanitaria Gregorio Marañón, Madrid, Spain.; Servicio de Microbiología Clínica y Enfermedades Infecciosas, Hospital General Universitario Gregorio Marañóngrid.410526.4, Madrid, Spain.
Ruiz-Serrano MJ; Instituto de Investigación Sanitaria Gregorio Marañón, Madrid, Spain.; Servicio de Microbiología Clínica y Enfermedades Infecciosas, Hospital General Universitario Gregorio Marañóngrid.410526.4, Madrid, Spain.
Tudó G; Servei de Microbiologia, Hospital Clinic-CDB, Facultat de Medicina i Ciències de la Salut, Universitat de Barcelona, Barcelona, Spain.
Alcaide F; Servicio de Microbiología, Hospital Universitario de Bellvitge-IDIBELL, L'Hospitalet de Llobregat, Barcelona, Spain.; Department of Pathology and Experimental Therapy, University of Barcelona, L'Hospitalet de Llobregat, Barcelona, Spain.
Muñoz P; Instituto de Investigación Sanitaria Gregorio Marañón, Madrid, Spain.; Servicio de Microbiología Clínica y Enfermedades Infecciosas, Hospital General Universitario Gregorio Marañóngrid.410526.4, Madrid, Spain.; CIBER Enfermedades Respiratorias, CIBERES, Madrid, Spain.; Departmento de Medicina, Universidad Complutense de Madrid, Madrid, Spain.
García de Viedma D; Instituto de Investigación Sanitaria Gregorio Marañón, Madrid, Spain.; Servicio de Microbiología Clínica y Enfermedades Infecciosas, Hospital General Universitario Gregorio Marañóngrid.410526.4, Madrid, Spain.; CIBER Enfermedades Respiratorias, CIBERES, Madrid, Spain.
Pérez-Lago L; Instituto de Investigación Sanitaria Gregorio Marañón, Madrid, Spain.; Servicio de Microbiología Clínica y Enfermedades Infecciosas, Hospital General Universitario Gregorio Marañóngrid.410526.4, Madrid, Spain.
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Źródło :
MSphere [mSphere] 2021 Dec 22; Vol. 6 (6), pp. e0074421. Date of Electronic Publication: 2021 Dec 15.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Whole Genome Sequencing*
DNA, Bacterial/*genetics
Mycobacterium tuberculosis/*genetics
Sputum/*microbiology
DNA, Bacterial/isolation & purification ; Genome, Bacterial ; Humans ; Pilot Projects ; Tuberculosis/diagnosis ; Tuberculosis/microbiology
Czasopismo naukowe
Tytuł :
Germline Sequencing Improves Tumor-Only Sequencing Interpretation in a Precision Genomic Study of Patients With Pediatric Solid Tumor.
Autorzy :
Schienda J; Department of Pediatric Oncology, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA.
Church AJ; Department of Pathology, Boston Children's Hospital, Boston, MA.
Corson LB; Department of Pediatric Oncology, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA.
Decker B; Department of Pathology, Boston Children's Hospital, Boston, MA.
Clinton CM; Department of Pediatric Oncology, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA.
Manning DK; Department of Pathology, Brigham and Women's Hospital, Boston, MA.
Imamovic-Tuco A; Department of Pediatric Oncology, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA.
Reidy D; Department of Pediatric Oncology, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA.
Strand GR; Department of Pediatric Oncology, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA.
Applebaum MA; Department of Pediatrics, University of Chicago, Chicago, IL.
Bagatell R; Department of Pediatrics, Children's Hospital of Philadelphia/University of Pennsylvania, Philadelphia, PA.
DuBois SG; Department of Pediatric Oncology, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA.
Glade-Bender JL; Department of Pediatrics, Memorial Sloan Kettering Cancer Center, New York, NY.
Kang W; Center for Research Informatics, University of Chicago, Chicago, IL.
Kim A; Center for Cancer and Blood Disorders, Children's National Hospital, Washington, DC.
Laetsch TW; Department of Pediatrics, Children's Hospital of Philadelphia/University of Pennsylvania, Philadelphia, PA.
Macy ME; Children's Hospital Colorado and University of Colorado Anschutz Medical Campus, Aurora, CO.
Maese L; Division of Pediatrics (Pediatric Hematology and Oncology University of Utah), Huntsman Cancer Institute, University of Utah, Salt Lake City, UT.
Pinto N; Division of Pediatric Hematology/Oncology, University of Washington, Seattle, WA.
Sabnis AJ; Department of Pediatrics, University of California, San Francisco, CA, San Francisco, CA.
Schiffman JD; Division of Pediatrics (Pediatric Hematology and Oncology University of Utah), Huntsman Cancer Institute, University of Utah, Salt Lake City, UT.
Colace SI; Division of Pediatric Hematology, Oncology, and BMT, Nationwide Children's Hospital, Columbus, OH.
Volchenboum SL; Department of Pediatrics, University of Chicago, Chicago, IL.
Weiser DA; Division of Pediatric Hematology, Oncology, and Cellular Therapy, Children's Hospital at Montefiore, Bronx, NY.
Nowak JA; Department of Pathology, Brigham and Women's Hospital, Boston, MA.
Lindeman NI; Department of Pathology, Brigham and Women's Hospital, Boston, MA.
Janeway KA; Department of Pediatric Oncology, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA.
Crompton BD; Department of Pediatric Oncology, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA.; Broad Institute of Harvard and MIT, Cambridge, MA.
Kamihara J; Department of Pediatric Oncology, Dana-Farber/Boston Children's Cancer and Blood Disorders Center, Boston, MA.
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Źródło :
JCO precision oncology [JCO Precis Oncol] 2021 Dec 22; Vol. 5. Date of Electronic Publication: 2021 Dec 22 (Print Publication: 2021).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Neoplasms/*genetics
Whole Genome Sequencing/*standards
Adolescent ; Adult ; Child ; Child, Preschool ; Female ; Genetic Predisposition to Disease/genetics ; Humans ; Infant ; Male ; Precision Medicine/methods ; Precision Medicine/standards ; Precision Medicine/trends ; Whole Genome Sequencing/methods ; Whole Genome Sequencing/statistics & numerical data
Czasopismo naukowe
Tytuł :
An accessible, efficient and global approach for the large-scale sequencing of bacterial genomes.
Autorzy :
Perez-Sepulveda BM; Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK. .
Heavens D; Earlham Institute, Norwich Research Park, Norwich, UK.
Pulford CV; Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK.
Predeus AV; Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK.
Low R; Earlham Institute, Norwich Research Park, Norwich, UK.
Webster H; Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK.
Dykes GF; Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK.
Schudoma C; Earlham Institute, Norwich Research Park, Norwich, UK.
Rowe W; Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK.; University of Birmingham, Birmingham, UK.
Lipscombe J; Earlham Institute, Norwich Research Park, Norwich, UK.
Watkins C; Earlham Institute, Norwich Research Park, Norwich, UK.
Kumwenda B; Kamuzu University of Health Sciences, Blantyre, Malawi.
Shearer N; Earlham Institute, Norwich Research Park, Norwich, UK.
Costigan K; Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK.
Baker KS; Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK.
Feasey NA; Liverpool School of Tropical Medicine, Pembroke Place, Liverpool, UK.; Malawi-Liverpool-Wellcome Programme, Blantyre, Malawi.
Hinton JCD; Institute of Infection, Veterinary & Ecological Sciences, University of Liverpool, Liverpool, UK. .
Hall N; Earlham Institute, Norwich Research Park, Norwich, UK. .; School of Biological Sciences, University of East Anglia, Norwich, UK. .; Department of Biological Sciences, King Abdulaziz University, Jeddah, Saudi Arabia. .
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Corporate Authors :
10KSG consortium
Źródło :
Genome biology [Genome Biol] 2021 Dec 21; Vol. 22 (1), pp. 349. Date of Electronic Publication: 2021 Dec 21.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Bacterial*
Whole Genome Sequencing/*methods
DNA, Bacterial/isolation & purification ; Genome ; Humans ; Salmonella enterica/genetics ; Whole Genome Sequencing/economics
Czasopismo naukowe
Tytuł :
WGS- versus ORF5-Based Typing of PRRSV: A Belgian Case Study.
Autorzy :
Vandenbussche F; Unit Exotic Viruses and Particular Diseases, Scientific Directorate of Infectious Diseases in Animals, Sciensano, 1180 Brussels, Belgium.
Mathijs E; Unit Enzootic, Vector-Borne and Bee Diseases, Scientific Directorate of Infectious Diseases in Animals, Sciensano, 1180 Brussels, Belgium.
Tignon M; Unit Enzootic, Vector-Borne and Bee Diseases, Scientific Directorate of Infectious Diseases in Animals, Sciensano, 1180 Brussels, Belgium.
Vandersmissen T; Animal Health Care Flanders (DGZ), 2500 Lier, Belgium.
Cay AB; Unit Enzootic, Vector-Borne and Bee Diseases, Scientific Directorate of Infectious Diseases in Animals, Sciensano, 1180 Brussels, Belgium.
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Źródło :
Viruses [Viruses] 2021 Dec 02; Vol. 13 (12). Date of Electronic Publication: 2021 Dec 02.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Open Reading Frames*
Whole Genome Sequencing*
Porcine Reproductive and Respiratory Syndrome/*virology
Porcine respiratory and reproductive syndrome virus/*classification
Porcine respiratory and reproductive syndrome virus/*genetics
Animals ; Belgium ; Cluster Analysis ; DNA, Complementary ; Genetic Variation ; Genome, Viral ; Mutagenesis, Insertional ; Phylogeny ; Recombination, Genetic ; Sequence Analysis, DNA ; Sequence Deletion ; Swine
Czasopismo naukowe
Tytuł :
Rare Lelliottia nimipressuralis from a wound infection case report using whole genome sequencing-based bacterial identification.
Autorzy :
Choi H; Department of Research, Central Texas Veterans Health Care System, Temple, TX, USA.
Hwang M; Department of Research, Central Texas Veterans Health Care System, Temple, TX, USA.
Chatterjee P; Department of Research, Central Texas Veterans Health Care System, Temple, TX, USA.
Jinadatha C; Department of Medicine, Central Texas Veterans Health Care System, Temple, TX, USA; Department of Medicine, College of Medicine, Texas A&M Health Science Center, Bryan, TX, USA.
Navarathna DH; Department of Pathology and Laboratory Medicine Services, Central Texas Veterans Health Care System, Temple, TX, USA. Electronic address: .
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Źródło :
Diagnostic microbiology and infectious disease [Diagn Microbiol Infect Dis] 2021 Dec; Vol. 101 (4), pp. 115538. Date of Electronic Publication: 2021 Sep 10.
Typ publikacji :
Case Reports
MeSH Terms :
Molecular Typing*
Whole Genome Sequencing*
Enterobacteriaceae/*isolation & purification
Enterobacteriaceae Infections/*diagnosis
Wound Infection/*diagnosis
Aged ; Anti-Bacterial Agents/pharmacology ; Anti-Bacterial Agents/therapeutic use ; Enterobacteriaceae/drug effects ; Enterobacteriaceae/genetics ; Enterobacteriaceae Infections/microbiology ; Enterobacteriaceae Infections/therapy ; Female ; Genome, Bacterial/genetics ; Humans ; Microbial Sensitivity Tests ; Treatment Outcome ; Wound Infection/microbiology ; Wound Infection/therapy
SCR Organism :
Lelliottia nimipressuralis
Raport
Tytuł :
Sexual Crossing, Chromosome-Level Genome Sequences, and Comparative Genomic Analyses for the Medicinal Mushroom Taiwanofungus Camphoratus (Syn. Antrodia Cinnamomea , Antrodia Camphorata) .
Autorzy :
Chen CL; Institute of Molecular Biology, Academia Sinicagrid.28665.3f, Taipei, Taiwan.
Li WC; Institute of Molecular Biology, Academia Sinicagrid.28665.3f, Taipei, Taiwan.
Chuang YC; Institute of Molecular Biology, Academia Sinicagrid.28665.3f, Taipei, Taiwan.
Liu HC; Institute of Molecular Biology, Academia Sinicagrid.28665.3f, Taipei, Taiwan.
Huang CH; Institute of Molecular Biology, Academia Sinicagrid.28665.3f, Taipei, Taiwan.
Lo KY; Institute of Molecular Biology, Academia Sinicagrid.28665.3f, Taipei, Taiwan.
Chen CY; Shen Nong Fungal Biotechnology Co. Ltd., Taoyuan City, Taiwan.
Chang FM; School of Dentistry, College of Oral Medicine, Taipei Medical Universitygrid.412896.0, Taipei, Taiwan.
Chang GA; KFK Biotech Co. Ltd., Kaohsiung, Taiwan.
Lin YL; HIMA Foundation, Taipei, Taiwan.
Yang WD; HIMA Foundation, Taipei, Taiwan.
Su CH; Department of Microbiology and Immunology, Taipei Medical Universitygrid.412896.0, Taipei, Taiwan.
Yeh TM; Shen Nong Fungal Biotechnology Co. Ltd., Taoyuan City, Taiwan.
Wang TF; Institute of Molecular Biology, Academia Sinicagrid.28665.3f, Taipei, Taiwan.
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Źródło :
Microbiology spectrum [Microbiol Spectr] 2022 Feb 23; Vol. 10 (1), pp. e0203221. Date of Electronic Publication: 2022 Feb 23.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Chromosomes*
Genomics*
Whole Genome Sequencing*
Polyporales/*genetics
Polyporales/*metabolism
Agaricales ; Basidiomycota ; Fruiting Bodies, Fungal/genetics ; Humans ; Mycelium ; Secondary Metabolism/genetics ; Sequence Analysis, DNA ; Transcriptome
SCR Organism :
Coprinopsis cinerea; Taiwanofungus camphoratus
Czasopismo naukowe
Tytuł :
Development and validation of a high throughput SARS-CoV-2 whole genome sequencing workflow in a clinical laboratory.
Autorzy :
Rosenthal SH; Quest Diagnostics, San Juan Capistrano, CA, 92675, USA.
Gerasimova A; Quest Diagnostics, San Juan Capistrano, CA, 92675, USA.
Ruiz-Vega R; Quest Diagnostics, San Juan Capistrano, CA, 92675, USA.
Livingston K; Quest Diagnostics, San Juan Capistrano, CA, 92675, USA.
Kagan RM; Quest Diagnostics, San Juan Capistrano, CA, 92675, USA. .
Liu Y; Quest Diagnostics, San Juan Capistrano, CA, 92675, USA.
Anderson B; Quest Diagnostics, San Juan Capistrano, CA, 92675, USA.
Owen R; Quest Diagnostics, San Juan Capistrano, CA, 92675, USA.
Bernstein L; Quest Diagnostics, San Juan Capistrano, CA, 92675, USA.
Smolgovsky A; Quest Diagnostics, San Juan Capistrano, CA, 92675, USA.
Xu D; Quest Diagnostics, San Juan Capistrano, CA, 92675, USA.
Chen R; Quest Diagnostics, San Juan Capistrano, CA, 92675, USA.
Grupe A; Quest Diagnostics, San Juan Capistrano, CA, 92675, USA.
Tanpaiboon P; Quest Diagnostics, San Juan Capistrano, CA, 92675, USA.
Lacbawan F; Quest Diagnostics, San Juan Capistrano, CA, 92675, USA. .
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Źródło :
Scientific reports [Sci Rep] 2022 Feb 08; Vol. 12 (1), pp. 2054. Date of Electronic Publication: 2022 Feb 08.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't; Validation Study
MeSH Terms :
Genome, Viral*
Mutation*
Whole Genome Sequencing*
COVID-19/*genetics
SARS-CoV-2/*genetics
Humans
Czasopismo naukowe
Tytuł :
Parenchymal involvement on CT pulmonary angiography in SARS-CoV-2 Alpha variant infection and correlation of COVID-19 CT severity score with clinical disease severity and short-term prognosis in a UK cohort.
Autorzy :
Tsakok MT; Department of Radiology, Oxford University Hospitals NHS Trust, Oxford, Oxfordshire, UK. Electronic address: .
Watson RA; Weatherall Institute of Molecular Medicine, Oxford, Oxfordshire, UK.
Lumley SF; Department of Clinical Medicine, University of Oxford Nuffield Oxford, Oxfordshire, UK; NIHR Oxford Biomedical Research Centre, Oxford, Oxfordshire, UK; National Institute for Health Research Health Protection Research Unit in Healthcare Associated Infections and Antimicrobial Resistance, University of Oxford, London, UK; Department of Infectious Diseases and Microbiology, Oxford University Hospitals NHS Trust, Oxford, Oxfordshire, UK.
Khan F; Oxford Medical School, Oxford, Oxfordshire, UK.
Qamhawi Z; Department of Radiology, Oxford University Hospitals NHS Trust, Oxford, Oxfordshire, UK.
Lodge A; Oxford Medical School, Oxford, Oxfordshire, UK.
Xie C; Department of Radiology, Oxford University Hospitals NHS Trust, Oxford, Oxfordshire, UK.
Shine B; Department of Radiology, Oxford University Hospitals NHS Trust, Oxford, Oxfordshire, UK.
Matthews P; Department of Infectious Diseases and Microbiology, Oxford University Hospitals NHS Trust, Oxford, Oxfordshire, UK.
Jeffery K; Department of Infectious Diseases and Microbiology, Oxford University Hospitals NHS Trust, Oxford, Oxfordshire, UK.
Eyre DW; Department of Infectious Diseases and Microbiology, Oxford University Hospitals NHS Trust, Oxford, Oxfordshire, UK.
Benamore R; Department of Radiology, Oxford University Hospitals NHS Trust, Oxford, Oxfordshire, UK.
Gleeson F; Department of Radiology, Oxford University Hospitals NHS Trust, Oxford, Oxfordshire, UK.
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Corporate Authors :
Modernising Medical Microbiology Group; Department of Clinical Medicine, University of Oxford Nuffield Oxford, Oxfordshire, UK.
Źródło :
Clinical radiology [Clin Radiol] 2022 Feb; Vol. 77 (2), pp. 148-155. Date of Electronic Publication: 2021 Nov 23.
Typ publikacji :
Journal Article
MeSH Terms :
Computed Tomography Angiography*
Severity of Illness Index*
Whole Genome Sequencing*
COVID-19/*diagnostic imaging
SARS-CoV-2/*genetics
Aged ; COVID-19/mortality ; COVID-19/virology ; Cohort Studies ; Critical Care ; Female ; Humans ; Length of Stay ; Male ; Middle Aged ; Retrospective Studies ; Time Factors ; United Kingdom ; Viral Load
SCR Organism :
SARS-CoV-2 variants
Czasopismo naukowe
Tytuł :
ASPICov: An automated pipeline for identification of SARS-Cov2 nucleotidic variants.
Autorzy :
Tilloy V; Centre National de Référence des Herpèsvirus, CHU Dupuytren, Limoges, France.; UF9481 Bioinformatique, CHU Dupuytren, Limoges, France.; UF8843 Génomique médicale, CHU Dupuytren, Limoges, France.
Cuzin P; IFREMER-IRSI-Service de Bioinformatique, Centre Bretagne, Plouzane, France.
Leroi L; IFREMER-IRSI-Service de Bioinformatique, Centre Bretagne, Plouzane, France.
Guérin E; UF8843 Génomique médicale, CHU Dupuytren, Limoges, France.
Durand P; IFREMER-IRSI-Service de Bioinformatique, Centre Bretagne, Plouzane, France.
Alain S; Centre National de Référence des Herpèsvirus, CHU Dupuytren, Limoges, France.; UF8843 Génomique médicale, CHU Dupuytren, Limoges, France.
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Źródło :
PloS one [PLoS One] 2022 Jan 26; Vol. 17 (1), pp. e0262953. Date of Electronic Publication: 2022 Jan 26 (Print Publication: 2022).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Computational Biology*
High-Throughput Nucleotide Sequencing*
Whole Genome Sequencing*
COVID-19/*genetics
RNA, Viral/*genetics
SARS-CoV-2/*genetics
Humans
SCR Organism :
SARS-CoV-2 variants
Czasopismo naukowe
Tytuł :
Prevalence, Antimicrobial Resistance, and Whole Genome Sequencing Analysis of Shiga Toxin-Producing Escherichia coli (STEC) and Enteropathogenic Escherichia coli (EPEC) from Imported Foods in China during 2015-2021.
Autorzy :
Shen J; Technology Center for Animal Plant and Food Inspection and Quarantine of Shanghai Customs, Shanghai 200135, China.
Zhi S; School of Medicine, Ningbo University, Ningbo 315211, China.
Guo D; Technology Center for Animal Plant and Food Inspection and Quarantine of Shanghai Customs, Shanghai 200135, China.
Jiang Y; Technology Center for Animal Plant and Food Inspection and Quarantine of Shanghai Customs, Shanghai 200135, China.
Xu X; Shanghai Centers for Disease Prevention and Control, Shanghai 200336, China.
Zhao L; Technology Center for Animal Plant and Food Inspection and Quarantine of Shanghai Customs, Shanghai 200135, China.
Lv J; Food Inspection and Quarantine Technology Center of Shenzhen Customs District, Shenzhen 518045, China.
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Źródło :
Toxins [Toxins (Basel)] 2022 Jan 19; Vol. 14 (2). Date of Electronic Publication: 2022 Jan 19.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Commerce*
Drug Resistance, Bacterial*
Genome, Bacterial*
Whole Genome Sequencing*
Enteropathogenic Escherichia coli/*drug effects
Shiga-Toxigenic Escherichia coli/*drug effects
Anti-Infective Agents/pharmacology ; China ; Enteropathogenic Escherichia coli/genetics ; Food Microbiology ; Humans ; Serogroup ; Shiga-Toxigenic Escherichia coli/genetics
Czasopismo naukowe
Tytuł :
Complete de novo assembly of Wolbachia endosymbiont of Diaphorina citri Kuwayama (Hemiptera: Liviidae) using long-read genome sequencing.
Autorzy :
Neupane S; Entomology and Nematology Department, Citrus Research and Education Center/IFAS, University of Florida, Lake Alfred, Florida, 33850, USA.
Bonilla SI; Entomology and Nematology Department, Citrus Research and Education Center/IFAS, University of Florida, Lake Alfred, Florida, 33850, USA.
Manalo AM; Entomology and Nematology Department, Citrus Research and Education Center/IFAS, University of Florida, Lake Alfred, Florida, 33850, USA.
Pelz-Stelinski KS; Entomology and Nematology Department, Citrus Research and Education Center/IFAS, University of Florida, Lake Alfred, Florida, 33850, USA. .
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Źródło :
Scientific reports [Sci Rep] 2022 Jan 07; Vol. 12 (1), pp. 125. Date of Electronic Publication: 2022 Jan 07.
Typ publikacji :
Comparative Study; Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms :
Chromosomes, Bacterial*
Genes, Bacterial*
Genome, Bacterial*
Whole Genome Sequencing*
DNA, Bacterial/*genetics
DNA, Circular/*genetics
Hemiptera/*microbiology
Wolbachia/*genetics
Animals ; Cell Line ; Phylogeny ; Sequence Analysis, DNA ; Symbiosis
Czasopismo naukowe
Tytuł :
Homogeneity of Arabian Peninsula dromedary camel populations with signals of geographic distinction based on whole genome sequence data.
Autorzy :
Bahbahani H; Department of Biological Sciences, Faculty of Science, Kuwait University, Al-Shidadya, Kuwait. .
Almathen F; Department of Public Health, College of Veterinary Medicine, King Faisal University, 400, Al-Hasa, Kingdom of Saudi Arabia.; Camel Research Center, King Faisal University, 400, Al-Hasa, 31982, Kingdom of Saudi Arabia.
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Źródło :
Scientific reports [Sci Rep] 2022 Jan 07; Vol. 12 (1), pp. 130. Date of Electronic Publication: 2022 Jan 07.
Typ publikacji :
Comparative Study; Journal Article
MeSH Terms :
Genetic Variation*
Genome*
Polymorphism, Single Nucleotide*
Whole Genome Sequencing*
Camelus/*genetics
Animals ; Genetic Heterogeneity ; Species Specificity
Czasopismo naukowe
Tytuł :
Whole Genome Sequencing: Early Diagnostic Tool in Newborns with Refractory Seizures.
Autorzy :
Chung EH; Homer Stryker MD School of Medicine, Western Michigan University, Kalamazoo, MI.
Frueh J; Homer Stryker MD School of Medicine, Western Michigan University, Kalamazoo, MI.
Lai A; Southwest Michigan Neonatology, PC, Kalamazoo.; Bronson Children's Hospital, Kalamazoo, MI.
Scheurer-Monaghan A; Southwest Michigan Neonatology, PC, Kalamazoo.; Bronson Children's Hospital, Kalamazoo, MI.
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Źródło :
NeoReviews [Neoreviews] 2022 Jan 01; Vol. 23 (1), pp. e49-e55.
Typ publikacji :
Journal Article
MeSH Terms :
Seizures*/diagnosis
Seizures*/genetics
Whole Genome Sequencing*
Early Diagnosis ; Humans ; Infant, Newborn
Czasopismo naukowe
Tytuł :
Revisiting the intrageneric structure of the genus Pseudomonas with complete whole genome sequence information: Insights into diversity and pathogen-related genetic determinants.
Autorzy :
Yi B; Institute of Medical Microbiology and Virology, Medical Faculty, Technische Universität Dresden, Dresden, Germany. Electronic address: .
Dalpke AH; Institute of Medical Microbiology and Virology, Medical Faculty, Technische Universität Dresden, Dresden, Germany. Electronic address: .
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Źródło :
Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases [Infect Genet Evol] 2022 Jan; Vol. 97, pp. 105183. Date of Electronic Publication: 2021 Dec 14.
Typ publikacji :
Journal Article
MeSH Terms :
Genome, Bacterial*
Whole Genome Sequencing*
Pseudomonas/*genetics
Genetic Variation ; Host Specificity ; Phylogeny ; Plant Diseases/microbiology ; Plants ; Pseudomonas/classification ; Species Specificity ; Virulence
Czasopismo naukowe
Tytuł :
Harnessing the power of neuroimaging and whole genome sequencing from fetus to adulthood.
Autorzy :
Parker A; British Paediatric Neurology Association.
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Źródło :
Developmental medicine and child neurology [Dev Med Child Neurol] 2022 Jan; Vol. 64 (1), pp. 5.
Typ publikacji :
Editorial
MeSH Terms :
Neuroimaging*
Whole Genome Sequencing*
Brain/*diagnostic imaging
Nervous System Diseases/*diagnostic imaging
Nervous System Diseases/*genetics
Humans
Opinia redakcyjna
Tytuł :
Prioritising positively selected variants in whole-genome sequencing data using FineMAV.
Autorzy :
Wahyudi F; School of Science, Monash University Malaysia, 47500, Bandar Sunway, Selangor Darul Ehsan, Malaysia.
Aghakhanian F; Monash University Malaysia Genomics Facility, 47500, Bandar Sunway, Selangor Darul Ehsan, Malaysia.; Genes and Human Disease Research Program, Oklahoma Medical Research Foundation,, Oklahoma City, OK, 73104, USA.
Rahman S; School of Science, Monash University Malaysia, 47500, Bandar Sunway, Selangor Darul Ehsan, Malaysia.; Tropical Medicine and Biology Multidisciplinary Platform, Monash University Malaysia, 47500, Bandar Sunway, Selangor Darul Ehsan, Malaysia.
Teo YY; Saw Swee Hock School of Public Health, National University of Singapore, Singapore, Singapore.
Szpak M; European Bioinformatics Institute, Hinxton, CB10 1SA, UK.; Wellcome Sanger Institute, Wellcome Genome Campus, Hinxton, CB10 1SA, UK.
Dhaliwal J; School of Information Technology, Monash University Malaysia, 47500, Bandar Sunway, Selangor Darul Ehsan, Malaysia. .
Ayub Q; School of Science, Monash University Malaysia, 47500, Bandar Sunway, Selangor Darul Ehsan, Malaysia. .; Monash University Malaysia Genomics Facility, 47500, Bandar Sunway, Selangor Darul Ehsan, Malaysia. .; Tropical Medicine and Biology Multidisciplinary Platform, Monash University Malaysia, 47500, Bandar Sunway, Selangor Darul Ehsan, Malaysia. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2021 Dec 18; Vol. 22 (1), pp. 604. Date of Electronic Publication: 2021 Dec 18.
Typ publikacji :
Journal Article
MeSH Terms :
Genomics*
Metagenomics*
Whole Genome Sequencing*
China ; Humans ; Singapore
Czasopismo naukowe
Tytuł :
Complete mitochondrial genome sequencing of Oxycarenus laetus (Hemiptera: Lygaeidae) from two geographically distinct regions of India.
Autorzy :
Sureshan SC; Bioinformatics and Entomoinformatics Lab, Department of Genetic Engineering, School of Bioengineering, SRM Institute of Science and Technology, Kattankulathur, 603203, Tamil Nadu, India.
Tanavade RV; Bioinformatics and Entomoinformatics Lab, Department of Genetic Engineering, School of Bioengineering, SRM Institute of Science and Technology, Kattankulathur, 603203, Tamil Nadu, India.
Ghosh S; Department of Advanced Zoology and Biotechnology, Guru Nanak College, Chennai, 600042, Tamil Nadu, India.
Ghosh S; Department of Virology, King Institute of Preventive Medicine and Research, Chennai, 600032, Tamil Nadu, India.
Sella RN; Membrane Protein Lab, Department of Genetic Engineering, School of Bioengineering, SRM Institute of Science and Technology, Kattankulathur, 603203, Tamil Nadu, India.
Mohideen HS; Bioinformatics and Entomoinformatics Lab, Department of Genetic Engineering, School of Bioengineering, SRM Institute of Science and Technology, Kattankulathur, 603203, Tamil Nadu, India. .
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Źródło :
Scientific reports [Sci Rep] 2021 Dec 09; Vol. 11 (1), pp. 23738. Date of Electronic Publication: 2021 Dec 09.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Mitochondrial*
Genomics*/methods
Whole Genome Sequencing*
Hemiptera/*classification
Hemiptera/*genetics
Animals ; Computational Biology/methods ; India ; Molecular Sequence Annotation ; Phylogeny
Czasopismo naukowe

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