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    Tytuł:
    Accessing an Expanded Exposure Science Module at the Comparative Toxicogenomics Database.
    Autorzy:
    Grondin CJ; Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, USA.
    Davis AP; Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, USA.
    Wiegers TC; Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, USA.
    Wiegers JA; Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, USA.
    Mattingly CJ; Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, USA.; Center for Human Health and the Environment, North Carolina State University , Raleigh, North Carolina, USA.
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    Źródło:
    Environmental health perspectives [Environ Health Perspect] 2018 Jan 18; Vol. 126 (1), pp. 014501. Date of Electronic Publication: 2018 Jan 18.
    Typ publikacji:
    Journal Article; Research Support, N.I.H., Extramural
    MeSH Terms:
    Databases, Factual*
    Toxicogenetics*
    Environmental Exposure/*adverse effects
    Gene Ontology ; Humans ; Phenotype
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
    Tytuł:
    Advancing Exposure Science through Chemical Data Curation and Integration in the Comparative Toxicogenomics Database.
    Autorzy:
    Grondin CJ; Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, USA.
    Davis AP
    Wiegers TC
    King BL
    Wiegers JA
    Reif DM
    Hoppin JA
    Mattingly CJ
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    Źródło:
    Environmental health perspectives [Environ Health Perspect] 2016 Oct; Vol. 124 (10), pp. 1592-1599. Date of Electronic Publication: 2016 May 12.
    Typ publikacji:
    Journal Article
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Generating Gene Ontology-Disease Inferences to Explore Mechanisms of Human Disease at the Comparative Toxicogenomics Database.
    Autorzy:
    Davis AP; Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, United States of America.
    Wiegers TC; Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, United States of America.
    King BL; Department of Bioinformatics, Mount Desert Island Biological Laboratory, Salisbury Cove, Maine, United States of America.
    Wiegers J; Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, United States of America.
    Grondin CJ; Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, United States of America.
    Sciaky D; Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, United States of America.
    Johnson RJ; Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, United States of America.
    Mattingly CJ; Department of Biological Sciences, North Carolina State University, Raleigh, North Carolina, United States of America.; Center for Human Health and the Environment, North Carolina State University, Raleigh, North Carolina, United States of America.
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    Źródło:
    PloS one [PLoS One] 2016 May 12; Vol. 11 (5), pp. e0155530. Date of Electronic Publication: 2016 May 12 (Print Publication: 2016).
    Typ publikacji:
    Journal Article; Research Support, N.I.H., Extramural
    MeSH Terms:
    Databases, Genetic*
    Gene Ontology*
    Toxicogenetics*
    Disease/*genetics
    Computational Biology ; Drug Repositioning ; Humans
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    ToxEvaluator: an integrated computational platform to aid the interpretation of toxicology study-related findings.
    Autorzy:
    Pelletier D; Pfizer Worldwide Research & Development, Groton, CT 06340 .
    Wiegers TC; Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695.
    Enayetallah A; Biogen, Cambridge, MA 02142, USA.
    Kibbey C; Pfizer Worldwide Research & Development, Groton, CT 06340.
    Gosink M; Pfizer Worldwide Research & Development, Groton, CT 06340.
    Koza-Taylor P; Pfizer Worldwide Research & Development, Groton, CT 06340.
    Mattingly CJ; Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695.
    Lawton M; Pfizer Worldwide Research & Development, Groton, CT 06340.
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    Źródło:
    Database : the journal of biological databases and curation [Database (Oxford)] 2016 May 09; Vol. 2016. Date of Electronic Publication: 2016 May 09 (Print Publication: 2016).
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't
    MeSH Terms:
    Database Management Systems*
    Databases, Factual*
    Computational Biology/*methods
    Toxicogenetics/*methods
    Animals ; Computer Simulation ; Humans ; Mice ; User-Computer Interface
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    BioCreative V CDR task corpus: a resource for chemical disease relation extraction.
    Autorzy:
    Li J; 1Institute of Medical Information, Chinese Academy of Medical Sciences, Beijing 100020, China.
    Sun Y; 1Institute of Medical Information, Chinese Academy of Medical Sciences, Beijing 100020, China.
    Johnson RJ; 2Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA.
    Sciaky D; 2Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA.
    Wei CH; 3National Center for Biotechnology Information, Bethesda, MD 20894, USA.
    Leaman R; 3National Center for Biotechnology Information, Bethesda, MD 20894, USA.
    Davis AP; 2Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA.
    Mattingly CJ; 2Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA.
    Wiegers TC; 2Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA.
    Lu Z; 3National Center for Biotechnology Information, Bethesda, MD 20894, USA .
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    Źródło:
    Database : the journal of biological databases and curation [Database (Oxford)] 2016 May 09; Vol. 2016. Date of Electronic Publication: 2016 May 09 (Print Publication: 2016).
    Typ publikacji:
    Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
    MeSH Terms:
    Disease*
    Computational Biology/*methods
    Data Mining/*methods
    Toxicogenetics/*methods
    Databases, Factual ; Humans
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task.
    Autorzy:
    Wei CH; National Center for Biotechnology Information, Bethesda, MD 20894, USA.
    Peng Y; National Center for Biotechnology Information, Bethesda, MD 20894, USA Department of Computer and Information Sciences, University of Delaware, Newark, DE 19716, USA.
    Leaman R; National Center for Biotechnology Information, Bethesda, MD 20894, USA.
    Davis AP; Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA and.
    Mattingly CJ; Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA and.
    Li J; Institute of Medical Information, Chinese Academy of Medical Sciences, Beijing 100700, China.
    Wiegers TC; Department of Biological Sciences and the Center for Human Health and the Environment, North Carolina State University, Raleigh, NC 27695, USA and.
    Lu Z; National Center for Biotechnology Information, Bethesda, MD 20894, USA .
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    Źródło:
    Database : the journal of biological databases and curation [Database (Oxford)] 2016 Mar 19; Vol. 2016. Date of Electronic Publication: 2016 Mar 19 (Print Publication: 2016).
    Typ publikacji:
    Journal Article; Research Support, N.I.H., Intramural
    MeSH Terms:
    Biomedical Research*
    Databases, Factual*
    Disease*
    Data Mining/*methods
    Humans ; Statistics as Topic ; Time Factors
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    BioC interoperability track overview.
    Autorzy:
    Comeau DC; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester M1 7DN, UK, Graduate Institute of BioMedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, R.O.C., Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria Australia 3010, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7617, USA, WBI, Institute for Computer Science, Humboldt-Universität zu Berlin, Berlin 10099, Germany, Berlin Brandenburg Center for Regenerative Therapies, Charité - Universitätsmedizin Berlin, Berlin 13353, Germany, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, Department of Computer Science and Information Engineering, National Central University, Taoyuan 32001, Taiwan, R.O.C., Health and Biomedical Informatics Centre, The University of Melbourne, Parkville, Victoria Australia 3010, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA .
    Batista-Navarro RT; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester M1 7DN, UK, Graduate Institute of BioMedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, R.O.C., Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria Australia 3010, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7617, USA, WBI, Institute for Computer Science, Humboldt-Universität zu Berlin, Berlin 10099, Germany, Berlin Brandenburg Center for Regenerative Therapies, Charité - Universitätsmedizin Berlin, Berlin 13353, Germany, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, Department of Computer Science and Information Engineering, National Central University, Taoyuan 32001, Taiwan, R.O.C., Health and Biomedical Informatics Centre, The University of Melbourne, Parkville, Victoria Australia 3010, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA.
    Dai HJ; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester M1 7DN, UK, Graduate Institute of BioMedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, R.O.C., Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria Australia 3010, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7617, USA, WBI, Institute for Computer Science, Humboldt-Universität zu Berlin, Berlin 10099, Germany, Berlin Brandenburg Center for Regenerative Therapies, Charité - Universitätsmedizin Berlin, Berlin 13353, Germany, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, Department of Computer Science and Information Engineering, National Central University, Taoyuan 32001, Taiwan, R.O.C., Health and Biomedical Informatics Centre, The University of Melbourne, Parkville, Victoria Australia 3010, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA.
    Doğan RI; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester M1 7DN, UK, Graduate Institute of BioMedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, R.O.C., Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria Australia 3010, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7617, USA, WBI, Institute for Computer Science, Humboldt-Universität zu Berlin, Berlin 10099, Germany, Berlin Brandenburg Center for Regenerative Therapies, Charité - Universitätsmedizin Berlin, Berlin 13353, Germany, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, Department of Computer Science and Information Engineering, National Central University, Taoyuan 32001, Taiwan, R.O.C., Health and Biomedical Informatics Centre, The University of Melbourne, Parkville, Victoria Australia 3010, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA.
    Yepes AJ; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester M1 7DN, UK, Graduate Institute of BioMedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, R.O.C., Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria Australia 3010, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7617, USA, WBI, Institute for Computer Science, Humboldt-Universität zu Berlin, Berlin 10099, Germany, Berlin Brandenburg Center for Regenerative Therapies, Charité - Universitätsmedizin Berlin, Berlin 13353, Germany, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, Department of Computer Science and Information Engineering, National Central University, Taoyuan 32001, Taiwan, R.O.C., Health and Biomedical Informatics Centre, The University of Melbourne, Parkville, Victoria Australia 3010, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA.
    Khare R; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester M1 7DN, UK, Graduate Institute of BioMedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, R.O.C., Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria Australia 3010, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7617, USA, WBI, Institute for Computer Science, Humboldt-Universität zu Berlin, Berlin 10099, Germany, Berlin Brandenburg Center for Regenerative Therapies, Charité - Universitätsmedizin Berlin, Berlin 13353, Germany, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, Department of Computer Science and Information Engineering, National Central University, Taoyuan 32001, Taiwan, R.O.C., Health and Biomedical Informatics Centre, The University of Melbourne, Parkville, Victoria Australia 3010, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA.
    Lu Z; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester M1 7DN, UK, Graduate Institute of BioMedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, R.O.C., Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria Australia 3010, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7617, USA, WBI, Institute for Computer Science, Humboldt-Universität zu Berlin, Berlin 10099, Germany, Berlin Brandenburg Center for Regenerative Therapies, Charité - Universitätsmedizin Berlin, Berlin 13353, Germany, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, Department of Computer Science and Information Engineering, National Central University, Taoyuan 32001, Taiwan, R.O.C., Health and Biomedical Informatics Centre, The University of Melbourne, Parkville, Victoria Australia 3010, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA.
    Marques H; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester M1 7DN, UK, Graduate Institute of BioMedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, R.O.C., Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria Australia 3010, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7617, USA, WBI, Institute for Computer Science, Humboldt-Universität zu Berlin, Berlin 10099, Germany, Berlin Brandenburg Center for Regenerative Therapies, Charité - Universitätsmedizin Berlin, Berlin 13353, Germany, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, Department of Computer Science and Information Engineering, National Central University, Taoyuan 32001, Taiwan, R.O.C., Health and Biomedical Informatics Centre, The University of Melbourne, Parkville, Victoria Australia 3010, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA.
    Mattingly CJ; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester M1 7DN, UK, Graduate Institute of BioMedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, R.O.C., Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria Australia 3010, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7617, USA, WBI, Institute for Computer Science, Humboldt-Universität zu Berlin, Berlin 10099, Germany, Berlin Brandenburg Center for Regenerative Therapies, Charité - Universitätsmedizin Berlin, Berlin 13353, Germany, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, Department of Computer Science and Information Engineering, National Central University, Taoyuan 32001, Taiwan, R.O.C., Health and Biomedical Informatics Centre, The University of Melbourne, Parkville, Victoria Australia 3010, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA.
    Neves M; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester M1 7DN, UK, Graduate Institute of BioMedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, R.O.C., Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria Australia 3010, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7617, USA, WBI, Institute for Computer Science, Humboldt-Universität zu Berlin, Berlin 10099, Germany, Berlin Brandenburg Center for Regenerative Therapies, Charité - Universitätsmedizin Berlin, Berlin 13353, Germany, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, Department of Computer Science and Information Engineering, National Central University, Taoyuan 32001, Taiwan, R.O.C., Health and Biomedical Informatics Centre, The University of Melbourne, Parkville, Victoria Australia 3010, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USANational Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester M1 7DN, UK, Graduate Institute of BioMedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, R.O.C., Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria Australia 3010, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7617, USA, WBI, Institute for Computer Science, Humboldt-Univers
    Peng Y; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester M1 7DN, UK, Graduate Institute of BioMedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, R.O.C., Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria Australia 3010, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7617, USA, WBI, Institute for Computer Science, Humboldt-Universität zu Berlin, Berlin 10099, Germany, Berlin Brandenburg Center for Regenerative Therapies, Charité - Universitätsmedizin Berlin, Berlin 13353, Germany, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, Department of Computer Science and Information Engineering, National Central University, Taoyuan 32001, Taiwan, R.O.C., Health and Biomedical Informatics Centre, The University of Melbourne, Parkville, Victoria Australia 3010, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA.
    Rak R; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester M1 7DN, UK, Graduate Institute of BioMedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, R.O.C., Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria Australia 3010, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7617, USA, WBI, Institute for Computer Science, Humboldt-Universität zu Berlin, Berlin 10099, Germany, Berlin Brandenburg Center for Regenerative Therapies, Charité - Universitätsmedizin Berlin, Berlin 13353, Germany, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, Department of Computer Science and Information Engineering, National Central University, Taoyuan 32001, Taiwan, R.O.C., Health and Biomedical Informatics Centre, The University of Melbourne, Parkville, Victoria Australia 3010, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA.
    Rinaldi F; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester M1 7DN, UK, Graduate Institute of BioMedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, R.O.C., Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria Australia 3010, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7617, USA, WBI, Institute for Computer Science, Humboldt-Universität zu Berlin, Berlin 10099, Germany, Berlin Brandenburg Center for Regenerative Therapies, Charité - Universitätsmedizin Berlin, Berlin 13353, Germany, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, Department of Computer Science and Information Engineering, National Central University, Taoyuan 32001, Taiwan, R.O.C., Health and Biomedical Informatics Centre, The University of Melbourne, Parkville, Victoria Australia 3010, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA.
    Tsai RT; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester M1 7DN, UK, Graduate Institute of BioMedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, R.O.C., Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria Australia 3010, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7617, USA, WBI, Institute for Computer Science, Humboldt-Universität zu Berlin, Berlin 10099, Germany, Berlin Brandenburg Center for Regenerative Therapies, Charité - Universitätsmedizin Berlin, Berlin 13353, Germany, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, Department of Computer Science and Information Engineering, National Central University, Taoyuan 32001, Taiwan, R.O.C., Health and Biomedical Informatics Centre, The University of Melbourne, Parkville, Victoria Australia 3010, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA.
    Verspoor K; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester M1 7DN, UK, Graduate Institute of BioMedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, R.O.C., Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria Australia 3010, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7617, USA, WBI, Institute for Computer Science, Humboldt-Universität zu Berlin, Berlin 10099, Germany, Berlin Brandenburg Center for Regenerative Therapies, Charité - Universitätsmedizin Berlin, Berlin 13353, Germany, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, Department of Computer Science and Information Engineering, National Central University, Taoyuan 32001, Taiwan, R.O.C., Health and Biomedical Informatics Centre, The University of Melbourne, Parkville, Victoria Australia 3010, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USANational Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester M1 7DN, UK, Graduate Institute of BioMedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, R.O.C., Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria Australia 3010, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7617, USA, WBI, Institute for Computer Science, Humboldt-Univers
    Wiegers TC; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester M1 7DN, UK, Graduate Institute of BioMedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, R.O.C., Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria Australia 3010, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7617, USA, WBI, Institute for Computer Science, Humboldt-Universität zu Berlin, Berlin 10099, Germany, Berlin Brandenburg Center for Regenerative Therapies, Charité - Universitätsmedizin Berlin, Berlin 13353, Germany, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, Department of Computer Science and Information Engineering, National Central University, Taoyuan 32001, Taiwan, R.O.C., Health and Biomedical Informatics Centre, The University of Melbourne, Parkville, Victoria Australia 3010, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA.
    Wu CH; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester M1 7DN, UK, Graduate Institute of BioMedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, R.O.C., Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria Australia 3010, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7617, USA, WBI, Institute for Computer Science, Humboldt-Universität zu Berlin, Berlin 10099, Germany, Berlin Brandenburg Center for Regenerative Therapies, Charité - Universitätsmedizin Berlin, Berlin 13353, Germany, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, Department of Computer Science and Information Engineering, National Central University, Taoyuan 32001, Taiwan, R.O.C., Health and Biomedical Informatics Centre, The University of Melbourne, Parkville, Victoria Australia 3010, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USANational Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester M1 7DN, UK, Graduate Institute of BioMedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, R.O.C., Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria Australia 3010, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7617, USA, WBI, Institute for Computer Science, Humboldt-Univers
    Wilbur WJ; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, National Centre for Text Mining and School of Computer Science, University of Manchester, Manchester M1 7DN, UK, Graduate Institute of BioMedical Informatics, College of Medical Science and Technology, Taipei Medical University, Taipei 110, Taiwan, R.O.C., Department of Computing and Information Systems, The University of Melbourne, Parkville, Victoria Australia 3010, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, Department of Biological Sciences, North Carolina State University, Raleigh, NC 27695-7617, USA, WBI, Institute for Computer Science, Humboldt-Universität zu Berlin, Berlin 10099, Germany, Berlin Brandenburg Center for Regenerative Therapies, Charité - Universitätsmedizin Berlin, Berlin 13353, Germany, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, Department of Computer Science and Information Engineering, National Central University, Taoyuan 32001, Taiwan, R.O.C., Health and Biomedical Informatics Centre, The University of Melbourne, Parkville, Victoria Australia 3010, Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE 19711, USA.
    Pokaż więcej
    Źródło:
    Database : the journal of biological databases and curation [Database (Oxford)] 2014 Jun 30; Vol. 2014. Date of Electronic Publication: 2014 Jun 30 (Print Publication: 2014).
    Typ publikacji:
    Journal Article; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.; Review
    MeSH Terms:
    Computational Biology*
    Data Mining*
    Natural Language Processing*
    Software*
    Biomedical Research ; Database Management Systems ; Databases, Factual ; Internet
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Web services-based text-mining demonstrates broad impacts for interoperability and process simplification.
    Autorzy:
    Wiegers TC; Department of Biological Sciences, North Carolina State University, 139 David Clark Lab, Campus Box 7617, Raleigh, NC 27695-7617, USA .
    Davis AP; Department of Biological Sciences, North Carolina State University, 139 David Clark Lab, Campus Box 7617, Raleigh, NC 27695-7617, USA.
    Mattingly CJ; Department of Biological Sciences, North Carolina State University, 139 David Clark Lab, Campus Box 7617, Raleigh, NC 27695-7617, USA.
    Pokaż więcej
    Źródło:
    Database : the journal of biological databases and curation [Database (Oxford)] 2014 Jun 10; Vol. 2014. Date of Electronic Publication: 2014 Jun 10 (Print Publication: 2014).
    Typ publikacji:
    Journal Article; Research Support, N.I.H., Extramural
    MeSH Terms:
    Internet*
    Data Mining/*methods
    Databases, Chemical ; Databases, Genetic ; Disease/genetics ; Genes ; Time Factors ; Toxicogenetics
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    BioCreative-IV virtual issue.
    Autorzy:
    Arighi CN; Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA.
    Wu CH; Center for Bioinformatics and Computational Biology, University of Delaware, Newark, DE, USA.
    Cohen KB; Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO, USA.
    Hirschman L; The MITRE Corporation, Bedford, MA, USA.
    Krallinger M; Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid, Spain.
    Valencia A; Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid, Spain.
    Lu Z; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD, USA.
    Wilbur JW; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD, USA.
    Wiegers TC; Department of Biological Sciences, North Carolina State University, Raleigh, NC, USA.
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    Źródło:
    Database : the journal of biological databases and curation [Database (Oxford)] 2014 May 22; Vol. 2014. Date of Electronic Publication: 2014 May 22 (Print Publication: 2014).
    Typ publikacji:
    Editorial
    MeSH Terms:
    Computational Biology*
    Congresses as Topic*
    Data Mining*
    Databases as Topic ; Gene Ontology ; Natural Language Processing
    Opinia redakcyjna
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    A CTD-Pfizer collaboration: manual curation of 88,000 scientific articles text mined for drug-disease and drug-phenotype interactions.
    Autorzy:
    Davis AP; Department of Biological Sciences, 3510 Thomas Hall, North Carolina State University, Raleigh, NC 27695-7617, USA, Computational Sciences Center of Emphasis, 200 Cambridgepark Drive, Pfizer Inc., Cambridge, MA 02139, USA, Department of Bioinformatics, P.O. Box 35, Old Bar Harbor Road, MDI Biological Laboratory, Salisbury Cove, ME 04672, USA, Compound Safety Prediction, MS 8118-B3, Eastern Point Road, Pfizer Inc., Groton, CT 06340, USA, Computational Sciences Center of Emphasis, Pfizer Inc., Ramsgate Road, Sandwich, Kent CT13 9NJ, UK, Computational Sciences Center of Emphasis, 558 Eastern Point Road, Pfizer Inc., Groton, CT 06340, USA and Drug Safety Research and Development, 558 Eastern Point Road, Pfizer Inc., Groton, CT 06340, USA.
    Wiegers TC
    Roberts PM
    King BL
    Lay JM
    Lennon-Hopkins K
    Sciaky D
    Johnson R
    Keating H
    Greene N
    Hernandez R
    McConnell KJ
    Enayetallah AE
    Mattingly CJ
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    Źródło:
    Database : the journal of biological databases and curation [Database (Oxford)] 2013 Nov 28; Vol. 2013, pp. bat080. Date of Electronic Publication: 2013 Nov 28 (Print Publication: 2013).
    Typ publikacji:
    Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
    MeSH Terms:
    Cooperative Behavior*
    Data Mining*
    Databases, Factual*
    Drug Industry*
    Publications*
    Toxicogenetics*
    Pharmaceutical Preparations/*metabolism
    Disease ; Humans ; Phenotype
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    BioC: a minimalist approach to interoperability for biomedical text processing.
    Autorzy:
    Comeau DC; National Center for Biotechnology Information, National Library of Medicine, Bethesda, MD 20894, USA, Department of Neurology, Massachusetts General Hospital, Boston, MA 02114, Harvard Medical School, Harvard University, Boston, MA 02115 USA, Center for Computational Pharmacology, University of Colorado Denver School of Medicine, Aurora, CO 80045, USA, Structural and Computational Biology Group, Spanish National Cancer Research Centre, Madrid E-28029, Spain, Center for Bioinformatics and Computational Biology, Department of Computer and Information Sciences, University of Delaware, Newark, DE 19711, USA, Institute of Computational Linguistics, University of Zurich, Zurich 8050, Switzerland, National ICT Australia (NICTA), Victoria Research Laboratory, The University of Melbourne, Parkville VIC 3010, Australia and Department of Biology, North Carolina State University, Raleigh, NC 27695, USA.
    Islamaj Doğan R
    Ciccarese P
    Cohen KB
    Krallinger M
    Leitner F
    Lu Z
    Peng Y
    Rinaldi F
    Torii M
    Valencia A
    Verspoor K
    Wiegers TC
    Wu CH
    Wilbur WJ
    Pokaż więcej
    Źródło:
    Database : the journal of biological databases and curation [Database (Oxford)] 2013 Sep 18; Vol. 2013, pp. bat064. Date of Electronic Publication: 2013 Sep 18 (Print Publication: 2013).
    Typ publikacji:
    Journal Article; Research Support, N.I.H., Extramural; Research Support, N.I.H., Intramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
    MeSH Terms:
    Biomedical Research*
    Data Mining*
    Natural Language Processing*
    Software*
    Humans
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Text mining effectively scores and ranks the literature for improving chemical-gene-disease curation at the comparative toxicogenomics database.
    Autorzy:
    Davis AP; Department of Biology, North Carolina State University, Raleigh, North Carolina, United States of America. />Wiegers TC
    Johnson RJ
    Lay JM
    Lennon-Hopkins K
    Saraceni-Richards C
    Sciaky D
    Murphy CG
    Mattingly CJ
    Pokaż więcej
    Źródło:
    PloS one [PLoS One] 2013 Apr 17; Vol. 8 (4), pp. e58201. Date of Electronic Publication: 2013 Apr 17 (Print Publication: 2013).
    Typ publikacji:
    Comparative Study; Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
    MeSH Terms:
    Databases, Factual*
    Molecular Sequence Annotation*
    Publications*
    Toxicogenetics*
    Data Mining/*methods
    Disease/*genetics
    Algorithms ; Documentation ; Humans ; Metals, Heavy/toxicity ; Reproducibility of Results
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Targeted journal curation as a method to improve data currency at the Comparative Toxicogenomics Database.
    Autorzy:
    Davis AP; Department of Biology, North Carolina State University, Raleigh, NC 27695-7617, USA. />Johnson RJ
    Lennon-Hopkins K
    Sciaky D
    Rosenstein MC
    Wiegers TC
    Mattingly CJ
    Pokaż więcej
    Źródło:
    Database : the journal of biological databases and curation [Database (Oxford)] 2012 Dec 06; Vol. 2012, pp. bas051. Date of Electronic Publication: 2012 Dec 06 (Print Publication: 2012).
    Typ publikacji:
    Journal Article; Research Support, N.I.H., Extramural
    MeSH Terms:
    Databases, Genetic*
    Periodicals as Topic*
    Toxicogenetics*
    Data Mining/*methods
    Environmental Health ; Genes ; Humans ; Molecular Sequence Annotation
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    BioCreative-2012 virtual issue.
    Autorzy:
    Wu CH
    Arighi CN
    Cohen KB
    Hirschman L
    Krallinger M
    Lu Z
    Mattingly C
    Valencia A
    Wiegers TC
    John Wilbur W
    Pokaż więcej
    Źródło:
    Database : the journal of biological databases and curation [Database (Oxford)] 2012 Dec 05; Vol. 2012, pp. bas049. Date of Electronic Publication: 2012 Dec 05 (Print Publication: 2012).
    Typ publikacji:
    Editorial
    MeSH Terms:
    Congresses as Topic*
    Data Mining*
    Databases, Genetic*
    Periodicals as Topic*
    Cooperative Behavior ; Workflow
    Opinia redakcyjna
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Collaborative biocuration--text-mining development task for document prioritization for curation.
    Autorzy:
    Wiegers TC; Department of Biology, North Carolina State University, Raleigh, NC 27695-7617, USA. />Davis AP
    Mattingly CJ
    Pokaż więcej
    Źródło:
    Database : the journal of biological databases and curation [Database (Oxford)] 2012 Nov 22; Vol. 2012, pp. bas037. Date of Electronic Publication: 2012 Nov 22 (Print Publication: 2012).
    Typ publikacji:
    Journal Article; Research Support, N.I.H., Extramural
    MeSH Terms:
    Cooperative Behavior*
    Databases, Genetic*
    Data Mining/*methods
    Documentation/*methods
    Disease ; Genes ; Humans ; Internet ; Toxicogenetics ; User-Computer Interface
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Disease model curation improvements at Mouse Genome Informatics.
    Autorzy:
    Bello SM; Mouse Genome Informatics, The Jackson Laboratory, Bar Harbor, ME 04609, USA. />Richardson JE
    Davis AP
    Wiegers TC
    Mattingly CJ
    Dolan ME
    Smith CL
    Blake JA
    Eppig JT
    Pokaż więcej
    Źródło:
    Database : the journal of biological databases and curation [Database (Oxford)] 2012 Mar 20; Vol. 2012, pp. bar063. Date of Electronic Publication: 2012 Mar 20 (Print Publication: 2012).
    Typ publikacji:
    Journal Article; Research Support, N.I.H., Extramural
    MeSH Terms:
    Database Management Systems*
    Databases, Factual*
    Disease Models, Animal*
    Genome*
    Mice/*genetics
    Animals ; Humans ; Molecular Sequence Annotation ; User-Computer Interface
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    MEDIC: a practical disease vocabulary used at the Comparative Toxicogenomics Database.
    Autorzy:
    Davis AP; Department of Bioinformatics, The Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672, USA. />Wiegers TC
    Rosenstein MC
    Mattingly CJ
    Pokaż więcej
    Źródło:
    Database : the journal of biological databases and curation [Database (Oxford)] 2012 Mar 20; Vol. 2012, pp. bar065. Date of Electronic Publication: 2012 Mar 20 (Print Publication: 2012).
    Typ publikacji:
    Journal Article; Research Support, N.I.H., Extramural
    MeSH Terms:
    Databases, Factual*
    Subject Headings*
    Toxicogenetics*
    Disease/classification ; Humans
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Ranking transitive chemical-disease inferences using local network topology in the comparative toxicogenomics database.
    Autorzy:
    King BL; Mount Desert Island Biological Laboratory, Salisbury Cove, Maine, United States of America.
    Davis AP
    Rosenstein MC
    Wiegers TC
    Mattingly CJ
    Pokaż więcej
    Źródło:
    PloS one [PLoS One] 2012; Vol. 7 (11), pp. e46524. Date of Electronic Publication: 2012 Nov 07.
    Typ publikacji:
    Comparative Study; Journal Article; Research Support, N.I.H., Extramural
    MeSH Terms:
    Databases, Factual*
    Drug-Related Side Effects and Adverse Reactions/*genetics
    Toxicogenetics/*methods
    Cluster Analysis ; Gene Regulatory Networks ; Humans ; Protein Interaction Mapping
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    The curation paradigm and application tool used for manual curation of the scientific literature at the Comparative Toxicogenomics Database.
    Autorzy:
    Davis AP; Department of Bioinformatics, The Mount Desert Island Biological Laboratory, Salisbury Cove, ME 04672, USA.
    Wiegers TC
    Rosenstein MC
    Murphy CG
    Mattingly CJ
    Pokaż więcej
    Źródło:
    Database : the journal of biological databases and curation [Database (Oxford)] 2011 Sep 20; Vol. 2011, pp. bar034. Date of Electronic Publication: 2011 Sep 20 (Print Publication: 2011).
    Typ publikacji:
    Journal Article; Research Support, N.I.H., Extramural
    MeSH Terms:
    Database Management Systems*
    Databases, Factual*
    Toxicogenetics*
    Vocabulary, Controlled*
    Disease ; Humans ; Internet ; Pharmaceutical Preparations ; User-Computer Interface
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Text mining and manual curation of chemical-gene-disease networks for the comparative toxicogenomics database (CTD).
    Autorzy:
    Wiegers TC; Department of Bioinformatics, The Mount Desert Island Biological Laboratory, Salisbury Cove, ME, USA. />Davis AP
    Cohen KB
    Hirschman L
    Mattingly CJ
    Pokaż więcej
    Źródło:
    BMC bioinformatics [BMC Bioinformatics] 2009 Oct 08; Vol. 10, pp. 326. Date of Electronic Publication: 2009 Oct 08.
    Typ publikacji:
    Comparative Study; Journal Article; Research Support, N.I.H., Extramural
    MeSH Terms:
    Databases, Factual*
    Gene Regulatory Networks*
    Toxicogenetics*
    Computational Biology/*methods
    Information Storage and Retrieval/*methods
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
      Wyświetlanie 1-20 z 20

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