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    Wyświetlanie 1-14 z 14
    Tytuł:
    Modelling the structures of frameshift-stimulatory pseudoknots from representative bat coronaviruses.
    Autorzy:
    Sekar RV; Department of Physics, University of Alberta, Edmonton, Canada.
    Oliva PJ; Department of Physics, University of Alberta, Edmonton, Canada.
    Woodside MT; Department of Physics, University of Alberta, Edmonton, Canada.; Li Ka Shing Institute of Virology, University of Alberta, Edmonton, Canada.; Centre for Prions and Protein Folding Diseases, University of Alberta, Edmonton, Canada.
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    Źródło:
    PLoS computational biology [PLoS Comput Biol] 2023 May 19; Vol. 19 (5), pp. e1011124. Date of Electronic Publication: 2023 May 19 (Print Publication: 2023).
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't
    MeSH Terms:
    Chiroptera*
    COVID-19*
    Humans ; Animals ; SARS-CoV-2/genetics ; Frameshift Mutation ; RNA ; Nucleic Acid Conformation ; RNA, Viral/genetics ; RNA, Viral/chemistry
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
    Tytuł:
    Identifying Inhibitors of -1 Programmed Ribosomal Frameshifting in a Broad Spectrum of Coronaviruses.
    Autorzy:
    Munshi S; Department of Physics, University of Alberta, Edmonton, AB T6G 2E1, Canada.
    Neupane K; Department of Physics, University of Alberta, Edmonton, AB T6G 2E1, Canada.
    Ileperuma SM; Department of Physics, University of Alberta, Edmonton, AB T6G 2E1, Canada.
    Halma MTJ; Department of Physics, University of Alberta, Edmonton, AB T6G 2E1, Canada.
    Kelly JA; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA.
    Halpern CF; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA.
    Dinman JD; Department of Cell Biology and Molecular Genetics, University of Maryland, College Park, MD 20742, USA.
    Loerch S; Janelia Research Campus, Howard Hughes Medical Institute, Ashburn, VA 20147, USA.
    Woodside MT; Department of Physics, University of Alberta, Edmonton, AB T6G 2E1, Canada.; Li Ka Shing Institute of Virology, University of Alberta, Edmonton, AB T6G 2E1, Canada.
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    Źródło:
    Viruses [Viruses] 2022 Jan 18; Vol. 14 (2). Date of Electronic Publication: 2022 Jan 18.
    Typ publikacji:
    Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
    MeSH Terms:
    Frameshift Mutation*
    Antiviral Agents/*pharmacology
    Coronavirus/*drug effects
    Coronavirus/*genetics
    Frameshifting, Ribosomal/*drug effects
    Viral Proteins/*antagonists & inhibitors
    Animals ; Antiviral Agents/therapeutic use ; Chiroptera/virology ; Coronavirus/classification ; Coronavirus Infections/drug therapy ; Nucleic Acid Conformation ; RNA, Messenger/genetics ; SARS-CoV-2/drug effects ; SARS-CoV-2/genetics ; Viral Proteins/genetics ; Virus Replication/drug effects
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
    Tytuł:
    Modeling the structure of the frameshift-stimulatory pseudoknot in SARS-CoV-2 reveals multiple possible conformers.
    Autorzy:
    Omar SI; Department of Physics, University of Alberta, Edmonton, Alberta, Canada.; Department of Oncology, University of Alberta, Edmonton, Alberta, Canada.
    Zhao M; Department of Physics, University of Alberta, Edmonton, Alberta, Canada.
    Sekar RV; Department of Physics, University of Alberta, Edmonton, Alberta, Canada.
    Moghadam SA; Department of Physics, University of Alberta, Edmonton, Alberta, Canada.
    Tuszynski JA; Department of Physics, University of Alberta, Edmonton, Alberta, Canada.; Department of Oncology, University of Alberta, Edmonton, Alberta, Canada.
    Woodside MT; Department of Physics, University of Alberta, Edmonton, Alberta, Canada.
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    Źródło:
    PLoS computational biology [PLoS Comput Biol] 2021 Jan 19; Vol. 17 (1), pp. e1008603. Date of Electronic Publication: 2021 Jan 19 (Print Publication: 2021).
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't
    MeSH Terms:
    Frameshifting, Ribosomal*
    Nucleic Acid Conformation*
    SARS-CoV-2/*chemistry
    COVID-19/virology ; Computational Biology ; Humans ; SARS-CoV-2/genetics
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
    Tytuł:
    Early stages of aggregation of engineered α-synuclein monomers and oligomers in solution.
    Autorzy:
    Li X; Department of Chemistry, University of Alberta, Edmonton, AB, T6G 2G2, Canada.; Department of Physics, University of Alberta, Edmonton, AB, T6G 2E1, Canada.
    Dong C; Department of Chemistry, University of Alberta, Edmonton, AB, T6G 2G2, Canada.; Department of Physics, University of Alberta, Edmonton, AB, T6G 2E1, Canada.
    Hoffmann M; Department of Physics, University of Alberta, Edmonton, AB, T6G 2E1, Canada.
    Garen CR; Department of Physics, University of Alberta, Edmonton, AB, T6G 2E1, Canada.
    Cortez LM; Division of Neurology, Department of Medicine, Centre for Prions and Protein Folding Diseases, and Neuroscience and Mental Health Institute, University of Alberta, Edmonton, AB, T6G 2M8, Canada.
    Petersen NO; Department of Chemistry, University of Alberta, Edmonton, AB, T6G 2G2, Canada. .
    Woodside MT; Department of Physics, University of Alberta, Edmonton, AB, T6G 2E1, Canada. michael.woodside@ualberta.ca.
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    Źródło:
    Scientific reports [Sci Rep] 2019 Feb 11; Vol. 9 (1), pp. 1734. Date of Electronic Publication: 2019 Feb 11.
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't
    MeSH Terms:
    Protein Aggregates*
    Protein Multimerization*
    Recombinant Proteins*/chemistry
    Recombinant Proteins*/genetics
    Recombinant Proteins*/metabolism
    Protein Aggregation, Pathological/*metabolism
    alpha-Synuclein/*chemistry
    alpha-Synuclein/*genetics
    Genetic Engineering ; Humans ; Kinetics ; Solubility ; alpha-Synuclein/metabolism
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
    Tytuł:
    Structural characteristics and membrane interactions of tandem α-synuclein oligomers.
    Autorzy:
    Dong C; Department of Physics, University of Alberta, Edmonton, AB, Canada.; Department of Chemistry, University of Alberta, Edmonton, AB, Canada.
    Hoffmann M; Department of Physics, University of Alberta, Edmonton, AB, Canada.
    Li X; Department of Physics, University of Alberta, Edmonton, AB, Canada.; Department of Chemistry, University of Alberta, Edmonton, AB, Canada.
    Wang M; Department of Physics, University of Alberta, Edmonton, AB, Canada.; National Research Council, National Institute of Nanotechnology, University of Alberta, Edmonton, AB, Canada.
    Garen CR; Department of Physics, University of Alberta, Edmonton, AB, Canada.
    Petersen NO; Department of Chemistry, University of Alberta, Edmonton, AB, Canada.
    Woodside MT; Department of Physics, University of Alberta, Edmonton, AB, Canada. michael.woodside@ualberta.ca.; National Research Council, National Institute of Nanotechnology, University of Alberta, Edmonton, AB, Canada. michael.woodside@ualberta.ca.
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    Źródło:
    Scientific reports [Sci Rep] 2018 Apr 30; Vol. 8 (1), pp. 6755. Date of Electronic Publication: 2018 Apr 30.
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't
    MeSH Terms:
    Cell Membrane/*genetics
    Lipids/*chemistry
    Parkinson Disease/*genetics
    alpha-Synuclein/*chemistry
    Cell Membrane/chemistry ; Humans ; Lipids/genetics ; Parkinson Disease/pathology ; Polymers ; Protein Multimerization ; Protein Structure, Quaternary ; Unilamellar Liposomes/chemistry ; alpha-Synuclein/genetics
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknie Pełny tekstSzczegóły
    Tytuł:
    Phase transitions and structure analysis in wild-type, A30P, E46K, and A53T mutants of α-synuclein.
    Autorzy:
    Healey MA; Department of Physics, University of Alberta, Edmonton, AB, T6G2E1, Canada.
    Woodside MT; Department of Physics, University of Alberta, Edmonton, AB, T6G2E1, Canada.; National Institute for Nanotechnology, National Research Council, Edmonton, AB, T6G2M9, Canada.
    Tuszynski JA; Department of Physics, University of Alberta, Edmonton, AB, T6G2E1, Canada. .; Department of Oncology, University of Alberta, Edmonton, AB, T6G1Z2, Canada. .
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    Źródło:
    European biophysics journal : EBJ [Eur Biophys J] 2016 May; Vol. 45 (4), pp. 355-64. Date of Electronic Publication: 2015 Dec 22.
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't
    MeSH Terms:
    Monte Carlo Method*
    Mutation*
    Phase Transition*
    Mutant Proteins/*chemistry
    Mutant Proteins/*genetics
    alpha-Synuclein/*chemistry
    alpha-Synuclein/*genetics
    Protein Structure, Secondary ; Transition Temperature
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Direct observation of transition paths during the folding of proteins and nucleic acids.
    Autorzy:
    Neupane K; Department of Physics, University of Alberta, Edmonton, Alberta, T6G 2E1, Canada.
    Foster DA; Department of Physics, University of Alberta, Edmonton, Alberta, T6G 2E1, Canada.
    Dee DR; Department of Physics, University of Alberta, Edmonton, Alberta, T6G 2E1, Canada.
    Yu H; Department of Physics, University of Alberta, Edmonton, Alberta, T6G 2E1, Canada.
    Wang F; National Institute for Nanotechnology, National Research Council, Edmonton, Alberta, T6G 2M9, Canada.
    Woodside MT; Department of Physics, University of Alberta, Edmonton, Alberta, T6G 2E1, Canada. National Institute for Nanotechnology, National Research Council, Edmonton, Alberta, T6G 2M9, Canada. michael.woodside@ualberta.ca.
    Pokaż więcej
    Źródło:
    Science (New York, N.Y.) [Science] 2016 Apr 08; Vol. 352 (6282), pp. 239-42.
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't
    MeSH Terms:
    Nucleic Acid Conformation*
    Protein Folding*
    DNA/*chemistry
    Proteins/*chemistry
    Motion ; Optical Tweezers ; Phase Transition ; Protein Structure, Tertiary
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Diverse metastable structures formed by small oligomers of α-synuclein probed by force spectroscopy.
    Autorzy:
    Neupane K; Department of Physics, University of Alberta, Edmonton, Alberta, Canada.
    Solanki A; Department of Physics, University of Alberta, Edmonton, Alberta, Canada.
    Sosova I; National Institute for Nanotechnology, National Research Council Canada, Edmonton, Alberta, Canada.
    Belov M; National Institute for Nanotechnology, National Research Council Canada, Edmonton, Alberta, Canada.
    Woodside MT; Department of Physics, University of Alberta, Edmonton, Alberta, Canada ; National Institute for Nanotechnology, National Research Council Canada, Edmonton, Alberta, Canada.
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    Źródło:
    PloS one [PLoS One] 2014 Jan 24; Vol. 9 (1), pp. e86495. Date of Electronic Publication: 2014 Jan 24 (Print Publication: 2014).
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't
    MeSH Terms:
    Protein Structure, Quaternary*
    alpha-Synuclein/*chemistry
    Escherichia coli/genetics ; Escherichia coli/metabolism ; Gene Expression ; Humans ; Kinetics ; Optical Tweezers ; Protein Aggregates ; Protein Engineering ; Protein Unfolding ; Recombinant Proteins/chemistry ; Recombinant Proteins/genetics ; Spectrum Analysis/methods ; Thermodynamics ; alpha-Synuclein/genetics
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Direct observation of hierarchical folding in single riboswitch aptamers.
    Autorzy:
    Greenleaf WJ; Department of Applied Physics, Stanford University, Stanford, CA 94305, USA.
    Frieda KL
    Foster DA
    Woodside MT
    Block SM
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    Źródło:
    Science (New York, N.Y.) [Science] 2008 Feb 01; Vol. 319 (5863), pp. 630-3. Date of Electronic Publication: 2008 Jan 03.
    Typ publikacji:
    Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
    MeSH Terms:
    Nucleic Acid Conformation*
    Aptamers, Nucleotide/*chemistry
    RNA, Messenger/*chemistry
    Adenine/chemistry ; Adenine/metabolism ; Aptamers, Nucleotide/metabolism ; Base Pairing ; DNA-Directed RNA Polymerases/metabolism ; Ligands ; Optical Tweezers ; RNA, Messenger/metabolism ; Thermodynamics
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Direct measurement of the full, sequence-dependent folding landscape of a nucleic acid.
    Autorzy:
    Woodside MT; National Institute for Nanotechnology, National Research Council of Canada, Edmonton AB, Canada, T6G 2M9.
    Anthony PC
    Behnke-Parks WM
    Larizadeh K
    Herschlag D
    Block SM
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    Źródło:
    Science (New York, N.Y.) [Science] 2006 Nov 10; Vol. 314 (5801), pp. 1001-4.
    Typ publikacji:
    Journal Article; Research Support, N.I.H., Extramural
    MeSH Terms:
    Nucleic Acid Conformation*
    DNA/*chemistry
    Base Pair Mismatch ; Base Pairing ; Models, Chemical ; Thermodynamics
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
      Wyświetlanie 1-14 z 14

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