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    Wyświetlanie 1-9 z 9
    Tytuł:
    Single-cell genomics-based analysis of virus-host interactions in marine surface bacterioplankton.
    Autorzy:
    Labonté JM; Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA.
    Swan BK; Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA.
    Poulos B; Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA.
    Luo H; School of Life Sciences, The Chinese University of Hong Kong, Hong Kong SAR, China.
    Koren S; National Biodefense Analysis and Countermeasures Center, Frederick, MD, USA.
    Hallam SJ; Department of Microbiology and Immunology, University of British Columbia, Vancouver, British Columbia, Canada.
    Sullivan MB; Department of Ecology and Evolutionary Biology, University of Arizona, Tucson, AZ, USA.
    Woyke T; DOE Joint Genome Institute, Walnut Creek, CA, USA.
    Wommack KE; Department of Plant and Soil Sciences, University of Delaware, Newark, DE, USA.
    Stepanauskas R; Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA.
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    Źródło:
    The ISME journal [ISME J] 2015 Nov; Vol. 9 (11), pp. 2386-99. Date of Electronic Publication: 2015 Apr 07.
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
    MeSH Terms:
    Bacteriophages/*genetics
    Gammaproteobacteria/*virology
    Geologic Sediments/*microbiology
    Plankton/*virology
    Archaea/virology ; Bacteroidetes/virology ; DNA, Viral/genetics ; Genome, Archaeal ; Genome, Bacterial ; Genomics ; Metagenomics ; Phylogeny ; Single-Cell Analysis ; Verrucomicrobia/virology
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Microbial dark matter ecogenomics reveals complex synergistic networks in a methanogenic bioreactor.
    Autorzy:
    Nobu MK; Department of Civil and Environmental Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
    Narihiro T; 1] Department of Civil and Environmental Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA [2] Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan.
    Rinke C; DOE Joint Genome Institute, Walnut Creek, CA, USA.
    Kamagata Y; 1] Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Tsukuba, Japan [2] Bioproduction Research Institute, National Institute of Advanced Industrial Science and Technology (AIST), Sapporo, Japan.
    Tringe SG; DOE Joint Genome Institute, Walnut Creek, CA, USA.
    Woyke T; DOE Joint Genome Institute, Walnut Creek, CA, USA.
    Liu WT; Department of Civil and Environmental Engineering, University of Illinois at Urbana-Champaign, Urbana, IL, USA.
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    Źródło:
    The ISME journal [ISME J] 2015 Aug; Vol. 9 (8), pp. 1710-22. Date of Electronic Publication: 2015 Jan 23.
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
    MeSH Terms:
    Gene Expression Profiling*
    Metagenomics*
    Bacteria/*genetics
    Bioreactors/*microbiology
    Methane/*metabolism
    Acetogenins/metabolism ; Bacteria/metabolism ; Biodegradation, Environmental ; Butyrates/metabolism ; Energy Metabolism/physiology ; Euryarchaeota/genetics ; Fermentation/physiology ; Peptococcaceae/genetics ; Phthalic Acids/metabolism ; Phylogeny ; Propionates/metabolism
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Genomic insights into the uncultivated marine Zetaproteobacteria at Loihi Seamount.
    Autorzy:
    Field EK; Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA.
    Sczyrba A; Center for Biotechnology, Bielefeld University, Bielefeld, Germany.
    Lyman AE; Department of Biology, Colby College, Waterville, ME, USA.
    Harris CC; Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA.
    Woyke T; US Department of Energy Joint Genome Institute, 2800 Mitchell Drive, Walnut Creek, CA, USA.
    Stepanauskas R; Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA.
    Emerson D; Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA.
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    Źródło:
    The ISME journal [ISME J] 2015 Mar 17; Vol. 9 (4), pp. 857-70. Date of Electronic Publication: 2015 Mar 17.
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
    MeSH Terms:
    Hydrothermal Vents/*microbiology
    Proteobacteria/*genetics
    Proteobacteria/*isolation & purification
    Seawater/*microbiology
    Bacterial Proteins/genetics ; Genomics ; Iron/metabolism ; Oxidation-Reduction ; Oxygen/metabolism ; Phylogeny ; Proteobacteria/classification ; Proteobacteria/metabolism
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Insights into the metabolism, lifestyle and putative evolutionary history of the novel archaeal phylum 'Diapherotrites'.
    Autorzy:
    Youssef NH; Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, USA.
    Rinke C; DOE Joint Genome Institute, Walnut Creek, CA, USA.
    Stepanauskas R; Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA.
    Farag I; Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, USA.
    Woyke T; DOE Joint Genome Institute, Walnut Creek, CA, USA.
    Elshahed MS; Department of Microbiology and Molecular Genetics, Oklahoma State University, Stillwater, OK, USA.
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    Źródło:
    The ISME journal [ISME J] 2015 Feb; Vol. 9 (2), pp. 447-60. Date of Electronic Publication: 2014 Aug 01.
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't
    MeSH Terms:
    Genome, Archaeal*
    Archaea/*genetics
    Archaea/classification ; Archaea/metabolism ; Evolution, Molecular ; Gene Transfer, Horizontal ; Phylogeny ; RNA, Ribosomal, 16S/genetics
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Comparative single-cell genomics reveals potential ecological niches for the freshwater acI Actinobacteria lineage.
    Autorzy:
    Ghylin TW; Department of Civil and Environmental Engineering, University of Wisconsin-Madison, Madison, WI, USA.
    Garcia SL; 1] Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA [2] Jena School for Microbial Communication (JSMC) and Microbial Ecology Group at Friedrich Schiller University Jena, Jena, Germany.
    Moya F; Department of Civil and Environmental Engineering, University of Wisconsin-Madison, Madison, WI, USA.
    Oyserman BO; Department of Civil and Environmental Engineering, University of Wisconsin-Madison, Madison, WI, USA.
    Schwientek P; DOE Joint Genome Institute, Walnut Creek, CA, USA.
    Forest KT; Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
    Mutschler J; Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
    Dwulit-Smith J; Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
    Chan LK; DOE Joint Genome Institute, Walnut Creek, CA, USA.
    Martinez-Garcia M; Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA.
    Sczyrba A; 1] DOE Joint Genome Institute, Walnut Creek, CA, USA [2] Center for Biotechnology (CeBiTec), Bielefeld University, Bielefeld, Germany.
    Stepanauskas R; Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA.
    Grossart HP; 1] Department of Limnology of Stratified Lakes, Leibniz-Institute for Freshwater Ecology and Inland Fisheries, Stechlin, Germany [2] Institute for Biochemistry and Biology, Potsdam University, Potsdam, Germany.
    Woyke T; DOE Joint Genome Institute, Walnut Creek, CA, USA.
    Warnecke F; Jena School for Microbial Communication (JSMC) and Microbial Ecology Group at Friedrich Schiller University Jena, Jena, Germany.
    Malmstrom R; DOE Joint Genome Institute, Walnut Creek, CA, USA.
    Bertilsson S; Department of Ecology and Genetics, Limnology and Science for Life Laboratory, Uppsala University, Uppsala, Sweden.
    McMahon KD; 1] Department of Civil and Environmental Engineering, University of Wisconsin-Madison, Madison, WI, USA [2] Department of Bacteriology, University of Wisconsin-Madison, Madison, WI, USA.
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    Źródło:
    The ISME journal [ISME J] 2014 Dec; Vol. 8 (12), pp. 2503-16. Date of Electronic Publication: 2014 Aug 05.
    Typ publikacji:
    Comparative Study; Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
    MeSH Terms:
    Genome, Bacterial*
    Actinobacteria/*genetics
    Lakes/*microbiology
    Actinobacteria/classification ; Actinobacteria/growth & development ; Actinobacteria/metabolism ; Actinomycetales/genetics ; Ecosystem ; Genomics ; Heterotrophic Processes
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Microbial ecology of an Antarctic hypersaline lake: genomic assessment of ecophysiology among dominant haloarchaea.
    Autorzy:
    Williams TJ; School of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, New South Wales, Australia.
    Allen MA; School of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, New South Wales, Australia.
    DeMaere MZ; School of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, New South Wales, Australia.
    Kyrpides NC; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
    Tringe SG; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
    Woyke T; Department of Energy Joint Genome Institute, Walnut Creek, CA, USA.
    Cavicchioli R; School of Biotechnology and Biomolecular Sciences, The University of New South Wales, Sydney, New South Wales, Australia.
    Pokaż więcej
    Źródło:
    The ISME journal [ISME J] 2014 Aug; Vol. 8 (8), pp. 1645-58. Date of Electronic Publication: 2014 Feb 20.
    Typ publikacji:
    Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
    MeSH Terms:
    Halobacteriaceae/*metabolism
    Lakes/*microbiology
    ATP-Binding Cassette Transporters/genetics ; Antarctic Regions ; Carbohydrate Metabolism ; Ecotype ; Genome, Archaeal ; Genomics ; Halobacteriaceae/classification ; Halobacteriaceae/genetics ; Nitrogen/metabolism ; Salinity
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Single-cell enabled comparative genomics of a deep ocean SAR11 bathytype.
    Autorzy:
    Thrash JC; 1] Department of Microbiology, Oregon State University, Corvallis, OR, USA [2] Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA.
    Temperton B; Department of Microbiology, Oregon State University, Corvallis, OR, USA.
    Swan BK; Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA.
    Landry ZC; Department of Microbiology, Oregon State University, Corvallis, OR, USA.
    Woyke T; DOE Joint Genome Institute, Walnut Creek, CA, USA.
    DeLong EF; 1] Department of Civil and Environmental Engineering, Massachusetts Institute of Technology, Cambridge, MA, USA [2] Center for Microbial Ecology: Research and Education, Honolulu, HI, USA.
    Stepanauskas R; Bigelow Laboratory for Ocean Sciences, East Boothbay, ME, USA.
    Giovannoni SJ; Department of Microbiology, Oregon State University, Corvallis, OR, USA.
    Pokaż więcej
    Źródło:
    The ISME journal [ISME J] 2014 Jul; Vol. 8 (7), pp. 1440-51. Date of Electronic Publication: 2014 Jan 23.
    Typ publikacji:
    Comparative Study; Journal Article; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
    MeSH Terms:
    Genes, rRNA*
    Phylogeny*
    Alphaproteobacteria/*genetics
    RNA, Ribosomal, 16S/*genetics
    Seawater/*microbiology
    Alphaproteobacteria/classification ; DNA, Intergenic/classification ; Ecotype ; Genomics ; Metagenome ; RNA, Ribosomal, 16S/classification ; Single-Cell Analysis ; Synteny
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Single-cell genomics reveals complex carbohydrate degradation patterns in poribacterial symbionts of marine sponges.
    Autorzy:
    Kamke J; Department of Botany II, Julius-von-Sachs Institute for Biological Sciences, University of Wuerzburg, Wuerzburg, Germany.
    Sczyrba A
    Ivanova N
    Schwientek P
    Rinke C
    Mavromatis K
    Woyke T
    Hentschel U
    Pokaż więcej
    Źródło:
    The ISME journal [ISME J] 2013 Dec; Vol. 7 (12), pp. 2287-300. Date of Electronic Publication: 2013 Jul 11.
    Typ publikacji:
    Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
    MeSH Terms:
    Bacterial Physiological Phenomena*
    Genome, Bacterial*
    Bacteria/*genetics
    Bacteria/*metabolism
    Carbohydrate Metabolism/*genetics
    Porifera/*microbiology
    Animals ; Bacteria/classification ; Genomics ; Phylogeny ; Seawater/microbiology
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
    Tytuł:
    Metagenome, metatranscriptome and single-cell sequencing reveal microbial response to Deepwater Horizon oil spill.
    Autorzy:
    Mason OU; Ecology Department, Lawrence Berkeley National Laboratory, One Cyclotron Rd., Berkeley, CA 94720, USA.
    Hazen TC
    Borglin S
    Chain PS
    Dubinsky EA
    Fortney JL
    Han J
    Holman HY
    Hultman J
    Lamendella R
    Mackelprang R
    Malfatti S
    Tom LM
    Tringe SG
    Woyke T
    Zhou J
    Rubin EM
    Jansson JK
    Pokaż więcej
    Źródło:
    The ISME journal [ISME J] 2012 Sep; Vol. 6 (9), pp. 1715-27. Date of Electronic Publication: 2012 Jun 21.
    Typ publikacji:
    Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
    MeSH Terms:
    Metagenome*
    Petroleum Pollution*
    Single-Cell Analysis*
    Transcriptome*
    Hydrocarbons/*metabolism
    Oceanospirillaceae/*genetics
    Oceanospirillaceae/*metabolism
    Seawater/*microbiology
    Archaea/genetics ; Archaea/physiology ; Bacteria/genetics ; Biodiversity ; Gulf of Mexico ; RNA, Ribosomal, 16S
    Czasopismo naukowe
    Pełny tekst  Link otwiera się w nowym oknieSzczegóły
      Wyświetlanie 1-9 z 9

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