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Tytuł :
Cultivar-specific transcriptome and pan-transcriptome reconstruction of tetraploid potato.
Autorzy :
Petek M; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia. .
Zagorščak M; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia. maja.zagorscak@nib.si.
Ramšak Ž; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Sanders S; National Center for Genome Analysis and Support (NCGAS), Indiana University, Bloomington, USA.
Tomaž Š; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.; Jožef Stefan International Postgraduate School, Ljubljana, Slovenia.
Tseng E; PacBio, Menlo Park, CA, USA.
Zouine M; Laboratoire Génomique et Biotechnologie des Fruits, INRA-INP/ENSAT, Castanet-Tolosan, France.
Coll A; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Gruden K; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
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Źródło :
Scientific data [Sci Data] 2020 Jul 24; Vol. 7 (1), pp. 249. Date of Electronic Publication: 2020 Jul 24.
Typ publikacji :
Dataset; Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Tetraploidy*
Transcriptome*
Solanum tuberosum/*genetics
Genome, Plant ; Plant Breeding ; RNA-Seq
Czasopismo naukowe
Tytuł :
Prunus persica plant endogenous peptides PpPep1 and PpPep2 cause PTI-like transcriptome reprogramming in peach and enhance resistance to Xanthomonas arboricola pv. pruni.
Autorzy :
Foix L; Institute for Agricultural and Food Technology, Universitat de Girona, Campus Montilivi (EPS-1), 17003, Girona, Spain.
Nadal A; Institute for Agricultural and Food Technology, Universitat de Girona, Campus Montilivi (EPS-1), 17003, Girona, Spain.
Zagorščak M; Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000, Ljubljana, Slovenia.
Ramšak Ž; Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000, Ljubljana, Slovenia.
Esteve-Codina A; CNAG-CRG, Centre for Genomic Regulation, Barcelona Institute of Science and Technology, 08028, Barcelona, Spain.; Universitat Pompeu Fabra (UPF), Barcelona, Spain.
Gruden K; Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000, Ljubljana, Slovenia.
Pla M; Institute for Agricultural and Food Technology, Universitat de Girona, Campus Montilivi (EPS-1), 17003, Girona, Spain. .
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Źródło :
BMC genomics [BMC Genomics] 2021 May 18; Vol. 22 (1), pp. 360. Date of Electronic Publication: 2021 May 18.
Typ publikacji :
Journal Article
MeSH Terms :
Prunus persica*/genetics
Peptides ; Plant Diseases/genetics ; Transcriptome ; Xanthomonas
SCR Organism :
Xanthomonas arboricola
Czasopismo naukowe
Tytuł :
Precision transcriptomics of viral foci reveals the spatial regulation of immune-signaling genes and identifies RBOHD as an important player in the incompatible interaction between potato virus Y and potato.
Autorzy :
Lukan T; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Pompe-Novak M; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Baebler Š; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Tušek-Žnidarič M; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Kladnik A; Biotechnical Faculty, University of Ljubljana, Jamnikarjeva 101, Ljubljana, 1000, Slovenia.
Križnik M; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Blejec A; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Zagorščak M; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Stare K; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Dušak B; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Coll A; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
Pollmann S; Centre for Plant Biotechnology and Genomics, Campus de Montegancedo Crta M-40, Km 38, Pozuelo de Alarcón, Madrid, 28223, UPM-INIA Spain.
Morgiewicz K; Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5a, Warsaw, 02-106, Poland.
Hennig J; Institute of Biochemistry and Biophysics, Polish Academy of Sciences, Pawińskiego 5a, Warsaw, 02-106, Poland.
Gruden K; National Institute of Biology, Večna pot 111, Ljubljana, 1000, Slovenia.
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Źródło :
The Plant journal : for cell and molecular biology [Plant J] 2020 Nov; Vol. 104 (3), pp. 645-661. Date of Electronic Publication: 2020 Sep 01.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Potyvirus/*genetics
Solanum tuberosum/*metabolism
Solanum tuberosum/*virology
Gene Expression Regulation, Plant/genetics ; Plant Diseases/genetics ; Plant Diseases/virology ; Plant Proteins/genetics ; Plant Proteins/metabolism ; Potyvirus/pathogenicity ; Reactive Oxygen Species/metabolism ; Salicylic Acid/metabolism
Czasopismo naukowe
Tytuł :
IGLOSS: iterative gapless local similarity search.
Autorzy :
Rabar B; Mathematics Department, Faculty of Natural Sciences and Mathematics, Zagreb, Croatia.
Zagorščak M; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Ristov S; Division of Electronics, Ruđer Bošković Institute, Zagreb, Croatia.
Rosenzweig M; Mathematics Department, Faculty of Natural Sciences and Mathematics, Zagreb, Croatia.
Goldstein P; Mathematics Department, Faculty of Natural Sciences and Mathematics, Zagreb, Croatia.
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Źródło :
Bioinformatics (Oxford, England) [Bioinformatics] 2019 Sep 15; Vol. 35 (18), pp. 3491-3492.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Algorithms*
Software*
Czasopismo naukowe
Tytuł :
DiNAR: revealing hidden patterns of plant signalling dynamics using Differential Network Analysis in R.
Autorzy :
Zagorščak M; 1Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia.
Blejec A; 1Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia.; 2Department of Organisms and Ecosystems Research, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia.
Ramšak Ž; 1Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia.
Petek M; 1Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia.
Stare T; 1Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia.
Gruden K; 1Department of Biotechnology and Systems Biology, National Institute of Biology, Večna pot 111, 1000 Ljubljana, Slovenia.
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Źródło :
Plant methods [Plant Methods] 2018 Aug 30; Vol. 14, pp. 78. Date of Electronic Publication: 2018 Aug 30 (Print Publication: 2018).
Typ publikacji :
Journal Article
Czasopismo naukowe
Tytuł :
Surveillance of human enteric viruses in coastal waters using concentration with methacrylate monolithic supports prior to detection by RT-qPCR.
Autorzy :
Gonçalves J; Marine Biology Station Piran, National Institute of Biology, Fornače 41, SI-6330 Piran, Slovenia; Department of Biotechnology and Systems Biology, National Institute of Biology, Večna Pot 111, SI-1000 Ljubljana, Slovenia. Electronic address: .
Gutiérrez-Aguirre I; Department of Biotechnology and Systems Biology, National Institute of Biology, Večna Pot 111, SI-1000 Ljubljana, Slovenia.
Balasubramanian MN; BioSistemika LLC, Koprska 98, SI-1000 Ljubljana, Slovenia.
Zagorščak M; Department of Biotechnology and Systems Biology, National Institute of Biology, Večna Pot 111, SI-1000 Ljubljana, Slovenia.
Ravnikar M; Department of Biotechnology and Systems Biology, National Institute of Biology, Večna Pot 111, SI-1000 Ljubljana, Slovenia.
Turk V; Marine Biology Station Piran, National Institute of Biology, Fornače 41, SI-6330 Piran, Slovenia; University of Nova Gorica, Vipavska 15, SI-5000 Nova Gorica, Slovenia.
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Źródło :
Marine pollution bulletin [Mar Pollut Bull] 2018 Mar; Vol. 128, pp. 307-317. Date of Electronic Publication: 2018 Feb 06.
Typ publikacji :
Journal Article
MeSH Terms :
Environmental Monitoring/*methods
Norovirus/*isolation & purification
Rotavirus/*isolation & purification
Seawater/*virology
Water Microbiology/*standards
Enterobacteriaceae/isolation & purification ; Environmental Monitoring/instrumentation ; Feces/microbiology ; Feces/virology ; Humans ; Mediterranean Sea ; Methacrylates/chemistry ; Norovirus/genetics ; Real-Time Polymerase Chain Reaction ; Recreation ; Rotavirus/genetics ; Seawater/microbiology ; Slovenia ; Waste Water/microbiology ; Waste Water/virology
Czasopismo naukowe
Tytuł :
Cell Death Is Not Sufficient for the Restriction of Potato Virus Y Spread in Hypersensitive Response-Conferred Resistance in Potato.
Autorzy :
Lukan T; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.; Jožef Stefan International Postgraduate School, Ljubljana, Slovenia.
Baebler Š; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Pompe-Novak M; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Guček K; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Zagorščak M; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Coll A; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
Gruden K; Department of Biotechnology and Systems Biology, National Institute of Biology, Ljubljana, Slovenia.
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Źródło :
Frontiers in plant science [Front Plant Sci] 2018 Feb 15; Vol. 9, pp. 168. Date of Electronic Publication: 2018 Feb 15 (Print Publication: 2018).
Typ publikacji :
Journal Article
Czasopismo naukowe
Tytuł :
Polymer monoliths for the concentration of viruses from environmental waters: A review.
Autorzy :
Vitek R; Departamento de Química Fundamental, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.; Instituto Federal de Educação Ciência e Tecnologia de Mato Grosso, Cuiabá, Brazil.
do Nascimento FH; Departamento de Química Fundamental, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.
Masini JC; Departamento de Química Fundamental, Instituto de Química, Universidade de São Paulo, São Paulo, Brazil.
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Źródło :
Journal of separation science [J Sep Sci] 2021 Jun 15. Date of Electronic Publication: 2021 Jun 15.
Typ publikacji :
Journal Article; Review
Czasopismo naukowe
Tytuł :
A novel pathogenicity determinant hijacks maize catalase 1 to enhance viral multiplication and infection.
Autorzy :
Jiao Z; State Kay Laboratory of Agrobiotechnology and Key Laboratory of Pest Monitoring and Green Management-MOA, Department of Plant Pathology, China Agricultural University, Beijing, 100193, China.
Tian Y; State Kay Laboratory of Agrobiotechnology and Key Laboratory of Pest Monitoring and Green Management-MOA, Department of Plant Pathology, China Agricultural University, Beijing, 100193, China.
Cao Y; Cereal Crops Institute, Henan Academy of Agricultural Sciences, Zhengzhou, 450002, China.
Wang J; State Kay Laboratory of Agrobiotechnology and Key Laboratory of Pest Monitoring and Green Management-MOA, Department of Plant Pathology, China Agricultural University, Beijing, 100193, China.
Zhan B; State Kay Laboratory of Agrobiotechnology and Key Laboratory of Pest Monitoring and Green Management-MOA, Department of Plant Pathology, China Agricultural University, Beijing, 100193, China.
Zhao Z; State Kay Laboratory of Agrobiotechnology and Key Laboratory of Pest Monitoring and Green Management-MOA, Department of Plant Pathology, China Agricultural University, Beijing, 100193, China.
Sun B; State Kay Laboratory of Agrobiotechnology and Key Laboratory of Pest Monitoring and Green Management-MOA, Department of Plant Pathology, China Agricultural University, Beijing, 100193, China.
Guo C; State Kay Laboratory of Agrobiotechnology and Key Laboratory of Pest Monitoring and Green Management-MOA, Department of Plant Pathology, China Agricultural University, Beijing, 100193, China.
Ma W; State Kay Laboratory of Agrobiotechnology and Key Laboratory of Pest Monitoring and Green Management-MOA, Department of Plant Pathology, China Agricultural University, Beijing, 100193, China.
Liao Z; State Key Laboratory for Sustainable Control of Pest and Disease, Institute of Virology and Biotechnology, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China.
Zhang H; State Key Laboratory for Sustainable Control of Pest and Disease, Institute of Virology and Biotechnology, Zhejiang Academy of Agricultural Sciences, Hangzhou, 310021, China.
Zhou T; State Kay Laboratory of Agrobiotechnology and Key Laboratory of Pest Monitoring and Green Management-MOA, Department of Plant Pathology, China Agricultural University, Beijing, 100193, China.
Xia Y; Department of Biology, Hong Kong Baptist University, Hong Kong SAR, China.; State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Hong Kong SAR, China.
Fan Z; State Kay Laboratory of Agrobiotechnology and Key Laboratory of Pest Monitoring and Green Management-MOA, Department of Plant Pathology, China Agricultural University, Beijing, 100193, China.
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Źródło :
The New phytologist [New Phytol] 2021 May; Vol. 230 (3), pp. 1126-1141. Date of Electronic Publication: 2021 Feb 24.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Plant Diseases*
Salicylic Acid*
Catalase/genetics ; Gene Silencing ; Virulence ; Zea mays/genetics
Czasopismo naukowe
Tytuł :
Spatial and seasonal variability of human and fish viruses in mussels inside and offshore of Ravenna's harbour (Adriatic Sea, Italy).
Autorzy :
Errani F; Department of Veterinary Medical Sciences, Alma Mater Studiorum, University of Bologna, Cesenatico, Italy.
Ponti M; Dipartimento di Scienze Biologiche, Geologiche e Ambientali (BiGeA) & Centro Interdipartimentale di Ricerca per le Scienze Ambientali (CIRSA), Alma Mater Studiorum, University of Bologna, Ravenna, Italy.; Consorzio Nazionale Interuniversitario per le Scienze del Mare (CoNISMa), Roma, Italy.
Volpe E; Department of Veterinary Medical Sciences, Alma Mater Studiorum, University of Bologna, Cesenatico, Italy.
Ciulli S; Department of Veterinary Medical Sciences, Alma Mater Studiorum, University of Bologna, Cesenatico, Italy.
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Źródło :
Journal of applied microbiology [J Appl Microbiol] 2021 Mar; Vol. 130 (3), pp. 994-1008. Date of Electronic Publication: 2020 Aug 16.
Typ publikacji :
Journal Article
MeSH Terms :
Bivalvia/*virology
Environmental Monitoring/*methods
Seafood/*virology
Viruses/*isolation & purification
Animals ; Fishes/virology ; Humans ; Italy ; Oceans and Seas ; Seasons ; Viruses/classification ; Viruses/pathogenicity
Czasopismo naukowe
Tytuł :
Respiratory Burst Oxidase Homologs RBOHD and RBOHF as Key Modulating Components of Response in Turnip Mosaic Virus— Arabidopsis thaliana (L.) Heyhn System.
Autorzy :
Otulak-Kozieł, Katarzyna (AUTHOR)
Kozieł, Edmund (AUTHOR)
Bujarski, Józef Julian (AUTHOR)
Frankowska-Łukawska, Justyna (AUTHOR)
Torres, Miguel Angel (AUTHOR)
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Źródło :
International Journal of Molecular Sciences. 11/15/2020, Vol. 21 Issue 22, p8510. 1p.
Czasopismo naukowe
Tytuł :
Brachypodium Phenylalanine Ammonia Lyase (PAL) Promotes Antiviral Defenses against Panicum mosaic virus and Its Satellites.
Autorzy :
Pant SR; Texas A&M AgriLife Research and Extension Center, Texas A&M University System, Weslaco, Texas, USA.
Irigoyen S; Texas A&M AgriLife Research and Extension Center, Texas A&M University System, Weslaco, Texas, USA.
Liu J; Texas A&M AgriLife Research and Extension Center, Texas A&M University System, Weslaco, Texas, USA.
Bedre R; Texas A&M AgriLife Research and Extension Center, Texas A&M University System, Weslaco, Texas, USA.
Christensen SA; Chemistry Unit, Center of Medical, Agricultural, and Veterinary Entomology, U.S. Department of Agriculture, Gainesville, Florida, USA.
Schmelz EA; Chemistry Unit, Center of Medical, Agricultural, and Veterinary Entomology, U.S. Department of Agriculture, Gainesville, Florida, USA.
Sedbrook JC; School of Biological Sciences, DOE Great Lakes Bioenergy Research Center, Illinois State University, Normal, Illinois, USA.
Scholthof KBG; Department of Plant Pathology and Microbiology, Texas A&M University, College Station, Texas, USA.
Mandadi KK; Texas A&M AgriLife Research and Extension Center, Texas A&M University System, Weslaco, Texas, USA .; Department of Plant Pathology and Microbiology, Texas A&M University, College Station, Texas, USA.
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Źródło :
MBio [mBio] 2021 Feb 16; Vol. 12 (1). Date of Electronic Publication: 2021 Feb 16.
Typ publikacji :
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
Czasopismo naukowe

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