Autor: "Zwart MP" - OpacWWW

Skocz do pozycji: 1.

Tytuł:: Robust Approaches to the Quantitative Analysis of Genome Formula Variation in Multipartite and Segmented Viruses.
Autorzy:: Johnson ML; Department of Microbial Ecology, The Netherlands Institute of Ecology (NIOO-KNAW), P.O. Box 50, 6700 AB Wageningen, The Netherlands.
Zwart MP; Department of Microbial Ecology, The Netherlands Institute of Ecology (NIOO-KNAW), P.O. Box 50, 6700 AB Wageningen, The Netherlands.; Pokaż więcej
Źródło:: Viruses [Viruses] 2024 Feb 08; Vol. 16 (2). Date of Electronic Publication: 2024 Feb 08.
Typ publikacji:: Journal Article
MeSH Terms:: Viruses*/genetics
Genome, Viral ; Biological Evolution

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Skocz do pozycji: 2.

Tytuł:: Defective RNA Particles of Plant Viruses-Origin, Structure and Role in Pathogenesis.
Autorzy:: Budzyńska D; Department of Virology and Bacteriology, Institute of Plant Protection-National Research Institute, Wl Wegorka 20, 60-318 Poznan, Poland.
Zwart MP; Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg 10, 6708 PB Wageningen, The Netherlands.
Hasiów-Jaroszewska B; Department of Virology and Bacteriology, Institute of Plant Protection-National Research Institute, Wl Wegorka 20, 60-318 Poznan, Poland.; Pokaż więcej
Źródło:: Viruses [Viruses] 2022 Dec 16; Vol. 14 (12). Date of Electronic Publication: 2022 Dec 16.
Typ publikacji:: Journal Article; Review; Research Support, Non-U.S. Gov't
MeSH Terms:: Plant Viruses*/genetics
RNA Viruses*/genetics
Animals ; Humans ; RNA, Viral/genetics ; RNA, Satellite ; Virus Replication ; Defective Viruses/genetics

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Skocz do pozycji: 3.

Tytuł:: Incomplete bunyavirus particles can cooperatively support virus infection and spread.
Autorzy:: Bermúdez-Méndez E; Department of Virology and Molecular Biology, Wageningen Bioveterinary Research, Lelystad, The Netherlands.; Laboratory of Virology, Wageningen University & Research, Wageningen, The Netherlands.
Bronsvoort KF; Department of Virology and Molecular Biology, Wageningen Bioveterinary Research, Lelystad, The Netherlands.
Zwart MP; Department of Microbial Ecology, The Netherlands Institute of Ecology, Wageningen, The Netherlands.
van de Water S; Department of Virology and Molecular Biology, Wageningen Bioveterinary Research, Lelystad, The Netherlands.
Cárdenas-Rey I; Department of Bacteriology, Host-Pathogen Interactions and Diagnostics Development, Wageningen Bioveterinary Research, Lelystad, The Netherlands.; Laboratory of Genetics, Wageningen University & Research, Wageningen, The Netherlands.
Vloet RPM; Department of Virology and Molecular Biology, Wageningen Bioveterinary Research, Lelystad, The Netherlands.
Koenraadt CJM; Laboratory of Entomology, Wageningen University & Research, Wageningen, The Netherlands.
Pijlman GP; Laboratory of Virology, Wageningen University & Research, Wageningen, The Netherlands.
Kortekaas J; Department of Virology and Molecular Biology, Wageningen Bioveterinary Research, Lelystad, The Netherlands.; Laboratory of Virology, Wageningen University & Research, Wageningen, The Netherlands.
Wichgers Schreur PJ; Department of Virology and Molecular Biology, Wageningen Bioveterinary Research, Lelystad, The Netherlands.; Pokaż więcej
Źródło:: PLoS biology [PLoS Biol] 2022 Nov 15; Vol. 20 (11), pp. e3001870. Date of Electronic Publication: 2022 Nov 15 (Print Publication: 2022).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Rift Valley fever virus*/genetics
Orthobunyavirus*
Rift Valley Fever*/genetics
Rift Valley Fever*/metabolism
Virus Diseases*
Culicidae*
Arboviruses*
Animals ; Humans ; Virion/metabolism ; Mammals

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Skocz do pozycji: 4.

Tytuł:: Empirical estimates of the mutation rate for an alphabaculovirus.
Autorzy:: Boezen D; Department of Microbial Ecology, The Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.
Ali G; Laboratory of Virology, Wageningen University and Research, Wageningen, The Netherlands.
Wang M; Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, PR China.
Wang X; Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan, PR China.
van der Werf W; Centre for Crop Systems Analysis, Wageningen University and Research, Wageningen, The Netherlands.
Vlak JM; Laboratory of Virology, Wageningen University and Research, Wageningen, The Netherlands.
Zwart MP; Department of Microbial Ecology, The Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.; Pokaż więcej
Źródło:: PLoS genetics [PLoS Genet] 2022 Jun 06; Vol. 18 (6), pp. e1009806. Date of Electronic Publication: 2022 Jun 06 (Print Publication: 2022).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Nucleopolyhedroviruses*/genetics
Animals ; Mutation ; Mutation Rate ; Spodoptera

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Skocz do pozycji: 5.

Tytuł:: Metagenomic Studies of Viruses in Weeds and Wild Plants: A Powerful Approach to Characterise Variable Virus Communities.
Autorzy:: Hasiów-Jaroszewska B; Department of Virology and Bacteriology, Institute of Plant Protection-National Research Institute, Węgorka 20, 60-318 Poznań, Poland.
Boezen D; Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg 10, 6708 PB Wageningen, The Netherlands.
Zwart MP; Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), Droevendaalsesteeg 10, 6708 PB Wageningen, The Netherlands.; Pokaż więcej
Źródło:: Viruses [Viruses] 2021 Sep 27; Vol. 13 (10). Date of Electronic Publication: 2021 Sep 27.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms:: Metagenomics/*methods
Plant Weeds/*genetics
Plant Weeds/*virology
Biodiversity ; Computational Biology/methods ; DNA Viruses/genetics ; Genome, Viral/genetics ; High-Throughput Nucleotide Sequencing/methods ; Metagenome/genetics ; Plants/genetics ; Plants/virology ; Viruses/classification ; Viruses/genetics ; Viruses, Unclassified/genetics

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Skocz do pozycji: 6.

Tytuł:: Effect of donor-recipient relatedness on the plasmid conjugation frequency: a meta-analysis.
Autorzy:: Alderliesten JB; Department of Population Health Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands. .
Duxbury SJN; Laboratory of Genetics, Wageningen University, Wageningen, The Netherlands.
Zwart MP; Department of Microbial Ecology, The Netherlands Institute of Ecology (NIOO-KNAW), Wageningen, The Netherlands.
de Visser JAGM; Laboratory of Genetics, Wageningen University, Wageningen, The Netherlands.
Stegeman A; Department of Population Health Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands.
Fischer EAJ; Department of Population Health Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands.; Pokaż więcej
Źródło:: BMC microbiology [BMC Microbiol] 2020 May 26; Vol. 20 (1), pp. 135. Date of Electronic Publication: 2020 May 26.
Typ publikacji:: Journal Article; Meta-Analysis; Research Support, Non-U.S. Gov't
MeSH Terms:: Bacteria/*classification
Escherichia coli/*growth & development
Plasmids/*genetics
Bacteria/genetics ; Bacterial Physiological Phenomena ; Conjugation, Genetic ; Drug Resistance, Bacterial ; Escherichia coli/genetics ; Escherichia coli Proteins/genetics ; Phylogeny ; Species Specificity

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Skocz do pozycji: 7.

Tytuł:: Identification of Loci Associated with Enhanced Virulence in Spodoptera litura Nucleopolyhedrovirus Isolates Using Deep Sequencing.
Autorzy:: Zwart MP; Department of Microbial Ecology, The Netherlands Institute of Ecology (NIOO-KNAW), 6708 PB Wageningen, The Netherlands. M.Zwart@nioo.knaw.nl.
Ali G; Laboratory of Virology, Wageningen University and Research, 6708PD Wageningen, The Netherlands.
Strien EAV; Department of Microbial Ecology, The Netherlands Institute of Ecology (NIOO-KNAW), 6708 PB Wageningen, The Netherlands.
Schijlen EGWM; Bioscience, Wageningen Plant Research, Wageningen University and Research, 6708PD Wageningen, The Netherlands.
Wang M; Wuhan Institute of Virology, Chinese Academy of Sciences, Wuhan 430071, China.
Werf WV; Centre for Crop Systems Analysis, Wageningen University and Research, 6708PD Wageningen, The Netherlands.
Vlak JM; Laboratory of Virology, Wageningen University and Research, 6708PD Wageningen, The Netherlands.; Pokaż więcej
Źródło:: Viruses [Viruses] 2019 Sep 17; Vol. 11 (9). Date of Electronic Publication: 2019 Sep 17.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Virulence*
Genetic Loci/*genetics
Nucleopolyhedroviruses/*genetics
Spodoptera/*virology
Animals ; China ; High-Throughput Nucleotide Sequencing ; Nucleopolyhedroviruses/pathogenicity ; Open Reading Frames ; Pakistan ; Pest Control, Biological
SCR Organism:: Spodoptera litura nucleopolyhedrovirus

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Skocz do pozycji: 8.

Tytuł:: Bioinformatics Meets Virology: The European Virus Bioinformatics Center's Second Annual Meeting.
Autorzy:: Ibrahim B; European Virus Bioinformatics Center, 07743 Jena, Germany. .; Faculty of Mathematics and Computer Science, Friedrich Schiller University Jena, 07743 Jena, Germany. .
Arkhipova K; Theoretical Biology and Bioinformatics, Utrecht University, 3508 TC Utrecht, The Netherlands. .
Andeweg AC; European Virus Bioinformatics Center, 07743 Jena, Germany. .; Department of Viroscience, Erasmus Medical Center, 3015 GD Rotterdam, The Netherlands. .
Posada-Céspedes S; Department of Biosystems Science and Engineering, ETH Zürich, 4058 Basel, Switzerland. .; SIB Swiss Institute of Bioinformatics, 4058 Basel, Switzerland. .
Enault F; Université Clermont Auvergne, CNRS, LMGE, F-63000 Clermont-Ferrand, France. .
Gruber A; Department of Parasitology, Institute of Biomedical Sciences, University of São Paulo, 05508-000 São Paulo, Brazil. .
Koonin EV; National Center for Biotechnology Information, NLM, National Institutes of Health, Bethesda, MD 20894, USA. .
Kupczok A; European Virus Bioinformatics Center, 07743 Jena, Germany. .; Institute of General Microbiology, Kiel University, 24118 Kiel, Germany. .
Lemey P; European Virus Bioinformatics Center, 07743 Jena, Germany. .; Clinical and Epidemiological Virology, Rega Institute, KU Leuven, University of Leuven, 3000 Leuven, Belgium. .
McHardy AC; European Virus Bioinformatics Center, 07743 Jena, Germany. .; Department for Computational Biology of Infection Research, Helmholtz Center for Infection Research, 38124 Braunschweig, Germany. .
McMahon DP; European Virus Bioinformatics Center, 07743 Jena, Germany. .; Institute of Biology, Free University Berlin, Schwendenerstr. 1, 14195 Berlin, Germany. .; Department for Materials and Environment, BAM Federal Institute for Materials Research and Testing, Unter den Eichen 87, 12205 Berlin, Germany. .
Pickett BE; European Virus Bioinformatics Center, 07743 Jena, Germany. .; J. Craig Venter Institute, Rockville, MD 20850, USA. .
Robertson DL; European Virus Bioinformatics Center, 07743 Jena, Germany. .; MRC-University of Glasgow Centre for Virus Research, Garscube Campus, Glasgow G61 1QH, UK. .
Scheuermann RH; European Virus Bioinformatics Center, 07743 Jena, Germany. .; J. Craig Venter Institute, La Jolla, CA 92037, USA. .
Zhernakova A; Department of Genetics, University Medical Center Groningen, 9700 RB Groningen, The Netherlands. .
Zwart MP; Department of Microbial Ecology, Netherlands Institute of Ecology (NIOO-KNAW), 6708 PB Wageningen, The Netherlands. m.zwart@nioo.knaw.nl.
Schönhuth A; European Virus Bioinformatics Center, 07743 Jena, Germany. .; Theoretical Biology and Bioinformatics, Utrecht University, 3508 TC Utrecht, The Netherlands. .; Centrum Wiskunde & Informatica, Science Park 123, 1098 XG Amsterdam, The Netherlands. .
Dutilh BE; European Virus Bioinformatics Center, 07743 Jena, Germany. .; Theoretical Biology and Bioinformatics, Utrecht University, 3508 TC Utrecht, The Netherlands. .
Marz M; European Virus Bioinformatics Center, 07743 Jena, Germany. .; Faculty of Mathematics and Computer Science, Friedrich Schiller University Jena, 07743 Jena, Germany. .; Leibniz Institute for Age Research-Fritz Lipmann Institute, 07745 Jena, Germany. .; Pokaż więcej
Źródło:: Viruses [Viruses] 2018 May 14; Vol. 10 (5). Date of Electronic Publication: 2018 May 14.
Typ publikacji:: Research Support, Non-U.S. Gov't
MeSH Terms:: Computational Biology*
Virology*
Congresses as Topic ; DNA Viruses ; Ecology ; Genomics ; Humans ; Societies, Scientific ; Software

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Skocz do pozycji: 9.

Tytuł:: High virulence does not necessarily impede viral adaptation to a new host: a case study using a plant RNA virus.
Autorzy:: Willemsen A; Instituto de Biología Molecular y Celular de Plantas (IBMCP), Consejo Superior de Investigaciones Científicas-Universidad Politécnica de Valencia, Campus UPV CPI 8E, Ingeniero Fausto Elio s/n, 46022, València, Spain. .; Present address: MIVEGEC (UMR CNRS 5290, IRD 224, UM), National Center for Scientific Research (CNRS), 911 Avenue Agropolis, BP 64501, 34394 Cedex 5, Montpellier, France. .
Zwart MP; Instituto de Biología Molecular y Celular de Plantas (IBMCP), Consejo Superior de Investigaciones Científicas-Universidad Politécnica de Valencia, Campus UPV CPI 8E, Ingeniero Fausto Elio s/n, 46022, València, Spain.; Present address: Institute of Theoretical Physics, University of Cologne, Zülpicher Straße 77, 50937, Cologne, Germany.
Elena SF; Instituto de Biología Molecular y Celular de Plantas (IBMCP), Consejo Superior de Investigaciones Científicas-Universidad Politécnica de Valencia, Campus UPV CPI 8E, Ingeniero Fausto Elio s/n, 46022, València, Spain.; The Santa Fe Institute, 1399 Hyde Park Road, Santa Fe, NM, 87501, USA.; Pokaż więcej
Źródło:: BMC evolutionary biology [BMC Evol Biol] 2017 Jan 19; Vol. 17 (1), pp. 25. Date of Electronic Publication: 2017 Jan 19.
Typ publikacji:: Journal Article
MeSH Terms:: Potyvirus/*genetics
Nicotiana/*virology
Adaptation, Physiological ; Biological Evolution ; Genetic Drift ; Host Specificity ; Mutation ; Potyvirus/physiology ; RNA, Plant ; Virulence

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Skocz do pozycji: 10.

Tytuł:: Within-host spatiotemporal dynamics of plant virus infection at the cellular level.
Autorzy:: Tromas N; Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas-UPV, València, Spain.
Zwart MP; Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas-UPV, València, Spain.
Lafforgue G; Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas-UPV, València, Spain.
Elena SF; Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas-UPV, València, Spain ; The Santa Fe Institute, Santa Fe, New Mexico, United States of America.; Pokaż więcej
Źródło:: PLoS genetics [PLoS Genet] 2014 Feb 27; Vol. 10 (2), pp. e1004186. Date of Electronic Publication: 2014 Feb 27 (Print Publication: 2014).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Host-Pathogen Interactions/*genetics
Plant Diseases/*genetics
Plant Viruses/*genetics
Nicotiana/*genetics
Flow Cytometry ; Plant Diseases/virology ; Plant Leaves/cytology ; Plant Leaves/genetics ; Plant Leaves/virology ; Plant Viruses/metabolism ; Plant Viruses/pathogenicity ; Nicotiana/cytology ; Nicotiana/virology

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Skocz do pozycji: 11.

Tytuł:: Stability and fitness impact of the visually discernible Rosea1 marker in the Tobacco etch virus genome.
Autorzy:: Majer E; Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas-Universidad Politécnica de Valencia, Ingeniero Fausto Elio s/n, 46022 València, Spain.
Daròs JA
Zwart MP; Pokaż więcej
Źródło:: Viruses [Viruses] 2013 Sep 09; Vol. 5 (9), pp. 2153-68. Date of Electronic Publication: 2013 Sep 09.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Genome, Viral*
Plant Diseases/*virology
Plant Proteins/*genetics
Potyvirus/*physiology
Nicotiana/*virology
Transcription Factors/*genetics
Antirrhinum/genetics ; Biomarkers/metabolism ; Genomic Instability ; Plant Proteins/metabolism ; Potyvirus/genetics ; Transcription Factors/metabolism

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Skocz do pozycji: 12.

Tytuł:: Model-selection-based approach for calculating cellular multiplicity of infection during virus colonization of multi-cellular hosts.
Autorzy:: Zwart MP; Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas-Universidad Politécnica de València, València, Spain. />Tromas N
Elena SF; Pokaż więcej
Źródło:: PloS one [PLoS One] 2013 May 28; Vol. 8 (5), pp. e64657. Date of Electronic Publication: 2013 May 28 (Print Publication: 2013).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Models, Theoretical*
Caulimovirus/*physiology
Host-Pathogen Interactions/*physiology
Plants/*virology
Tobacco Mosaic Virus/*physiology
Virus Replication/*physiology
Poisson Distribution

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Skocz do pozycji: 13.

Tytuł:: Complex dynamics of defective interfering baculoviruses during serial passage in insect cells.
Autorzy:: Zwart MP; Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas-UPV, CL Ingeniero Fausto Elio s/n, 46022, València, Spain. />Pijlman GP
Sardanyés J
Duarte J
Januário C
Elena SF; Pokaż więcej
Źródło:: Journal of biological physics [J Biol Phys] 2013 Mar; Vol. 39 (2), pp. 327-42. Date of Electronic Publication: 2013 Apr 19.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Baculoviridae/*physiology
Defective Viruses/*physiology
Spodoptera/*cytology
Animals ; Nonlinear Dynamics ; Polymerase Chain Reaction ; Serial Passage ; Sf9 Cells ; Virion/physiology

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Skocz do pozycji: 14.

Tytuł:: One is enough: in vivo effective population size is dose-dependent for a plant RNA virus.
Autorzy:: Zwart MP; Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas-UPV, València, Spain. />Daròs JA
Elena SF; Pokaż więcej
Źródło:: PLoS pathogens [PLoS Pathog] 2011 Jul; Vol. 7 (7), pp. e1002122. Date of Electronic Publication: 2011 Jul 07.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Host-Pathogen Interactions/*physiology
Plant Diseases/*virology
Plant Viruses/*physiology
Potyvirus/*genetics
Capsicum/virology ; Genotype ; Population Density ; Potyvirus/growth & development ; Potyvirus/pathogenicity ; RNA, Viral/metabolism ; Nicotiana/virology ; Viral Load/physiology ; Virus Replication

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Skocz do pozycji: 15.

Tytuł:: Heterogeneous host susceptibility enhances prevalence of mixed-genotype micro-parasite infections.
Autorzy:: van der Werf W; Centre for Crop Systems Analysis, Wageningen University, Wageningen, The Netherlands.
Hemerik L
Vlak JM
Zwart MP; Pokaż więcej
Źródło:: PLoS computational biology [PLoS Comput Biol] 2011 Jun; Vol. 7 (6), pp. e1002097. Date of Electronic Publication: 2011 Jun 30.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Disease Susceptibility*
Host-Pathogen Interactions/*physiology
Moths/*virology
Animals ; Genotype ; Larva/virology ; Models, Biological ; Models, Statistical ; Nucleopolyhedroviruses/classification ; Nucleopolyhedroviruses/genetics ; Species Specificity ; Systems Biology ; Virion/physiology

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Skocz do pozycji: 16.

Tytuł:: Evolutionary trajectory of white spot syndrome virus (WSSV) genome shrinkage during spread in Asia.
Autorzy:: Zwart MP; Laboratory of Virology, Wageningen University, Wageningen, The Netherlands. />Dieu BT
Hemerik L
Vlak JM; Pokaż więcej
Źródło:: PloS one [PLoS One] 2010 Oct 14; Vol. 5 (10), pp. e13400. Date of Electronic Publication: 2010 Oct 14.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Evolution, Molecular*
Genome, Viral*
White spot syndrome virus 1/*genetics
Animals ; Aquaculture ; Asia ; Crustacea/virology ; Open Reading Frames

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