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Tytuł :
Space-time dynamics in monitoring neotropical fish communities using eDNA metabarcoding.
Autorzy :
Sales NG; Ecosystems and Environment Research Centre, School of Science, Engineering and Environment, University of Salford, UK; CESAM - Centre for Environmental and Marine Studies, Departamento de Biologia Animal, Faculdade de Ciências da Universidade de Lisboa, Lisbon, Portugal. Electronic address: .
Wangensteen OS; Norwegian College of Fishery Science, UiT - The Arctic University of Norway, Tromsø, Norway.
Carvalho DC; Programa de Pós-graduação em Biologia de Vertebrados, Pontifícia Universidade Católica de Minas Gerais, Belo Horizonte, Brazil.
Deiner K; Life Sciences, Natural History Museum, London, UK.
Præbel K; Norwegian College of Fishery Science, UiT - The Arctic University of Norway, Tromsø, Norway.
Coscia I; Ecosystems and Environment Research Centre, School of Science, Engineering and Environment, University of Salford, UK.
McDevitt AD; Ecosystems and Environment Research Centre, School of Science, Engineering and Environment, University of Salford, UK.
Mariani S; Ecosystems and Environment Research Centre, School of Science, Engineering and Environment, University of Salford, UK; School of Natural Sciences and Psychology, Liverpool John Moores University, Liverpool, UK.
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Źródło :
The Science of the total environment [Sci Total Environ] 2021 Feb 01; Vol. 754, pp. 142096. Date of Electronic Publication: 2020 Sep 01.
Typ publikacji :
Journal Article
MeSH Terms :
DNA Barcoding, Taxonomic*
Environmental Monitoring*
Animals ; Biodiversity ; Brazil ; Fishes/genetics
Czasopismo naukowe
Tytuł :
On the complementarity of DNA barcoding and morphology to distinguish benign endemic insects from possible pests: the case of Dirioxa pornia and the tribe Acanthonevrini (Diptera: Tephritidae: Phytalmiinae) in Australia.
Autorzy :
Martoni F; Agriculture Victoria Research, AgriBio Centre for AgriBioscience, Bundoora, Victoria, Australia.
Valenzuela I; Agriculture Victoria Research, AgriBio Centre for AgriBioscience, Bundoora, Victoria, Australia.
Blacket MJ; Agriculture Victoria Research, AgriBio Centre for AgriBioscience, Bundoora, Victoria, Australia.
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Źródło :
Insect science [Insect Sci] 2021 Feb; Vol. 28 (1), pp. 261-270. Date of Electronic Publication: 2020 May 08.
Typ publikacji :
Journal Article
MeSH Terms :
DNA Barcoding, Taxonomic*
Insect Control/*methods
Tephritidae/*anatomy & histology
Tephritidae/*genetics
Animal Distribution ; Animals ; Australia ; Electron Transport Complex IV/analysis ; Insect Proteins/analysis ; Larva/anatomy & histology ; Larva/genetics ; Larva/growth & development ; Tephritidae/growth & development
Czasopismo naukowe
Tytuł :
DNA barcoding of Oryza: conventional, specific, and super barcodes.
Autorzy :
Zhang W; State Key Laboratory of Systematic & Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.; College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.
Sun Y; State Key Laboratory of Systematic & Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.; College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.
Liu J; State Key Laboratory of Systematic & Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.; College of Life Science, Sichuan Agricultural University, Yaan, 625014, Sichuan, China.
Xu C; State Key Laboratory of Systematic & Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.
Zou X; State Key Laboratory of Systematic & Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.
Chen X; State Key Laboratory of Systematic & Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.; College of Landscape Architecture, Northeast Forestry University, Haerbin, 150040, China.
Liu Y; State Key Laboratory of Systematic & Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.; College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.
Wu P; State Key Laboratory of Systematic & Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China.; College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China.
Yang X; Key Laboratory of Forensic Genetics, Institute of Forensic Science, Ministry of Public Security, China, Beijing, 100038, China. .
Zhou S; State Key Laboratory of Systematic & Evolutionary Botany, Institute of Botany, Chinese Academy of Sciences, Beijing, 100093, China. .; College of Life Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China. .
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Źródło :
Plant molecular biology [Plant Mol Biol] 2021 Feb; Vol. 105 (3), pp. 215-228. Date of Electronic Publication: 2020 Sep 03.
Typ publikacji :
Journal Article
MeSH Terms :
DNA Barcoding, Taxonomic*
Oryza/*classification
Oryza/*genetics
Likelihood Functions ; Phylogeny ; Seeds/genetics ; Species Specificity ; Tissue Banks
Czasopismo naukowe
Tytuł :
Status and prospects of marine NIS detection and monitoring through (e)DNA metabarcoding.
Autorzy :
Duarte S; Centre of Molecular and Environmental Biology (CBMA), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal; Institute of Science and Innovation for Bio-Sustainability (IB-S), University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal. Electronic address: .
Vieira PE; Centre of Molecular and Environmental Biology (CBMA), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal; Institute of Science and Innovation for Bio-Sustainability (IB-S), University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal.
Lavrador AS; Centre of Molecular and Environmental Biology (CBMA), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal; Institute of Science and Innovation for Bio-Sustainability (IB-S), University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal.
Costa FO; Centre of Molecular and Environmental Biology (CBMA), Department of Biology, University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal; Institute of Science and Innovation for Bio-Sustainability (IB-S), University of Minho, Campus de Gualtar, 4710-057 Braga, Portugal.
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Źródło :
The Science of the total environment [Sci Total Environ] 2021 Jan 10; Vol. 751, pp. 141729. Date of Electronic Publication: 2020 Aug 18.
Typ publikacji :
Journal Article; Review; Systematic Review
MeSH Terms :
DNA Barcoding, Taxonomic*
Ecosystem*
Biodiversity ; DNA ; Environmental DNA
Czasopismo naukowe
Tytuł :
Assessment of fungal diversity present in lakes of Maritime Antarctica using DNA metabarcoding: a temporal microcosm experiment.
Autorzy :
de Souza LMD; Departamento de Microbiologia, Laboratório de Microbiologia Polar e Conexões Tropicais, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, P. O. Box 486, Belo Horizonte, MG, CEP 31270-901, Brazil.
Ogaki MB; Departamento de Microbiologia, Laboratório de Microbiologia Polar e Conexões Tropicais, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, P. O. Box 486, Belo Horizonte, MG, CEP 31270-901, Brazil.
Câmara PEAS; Departamento de Botânica, Universidade de Brasília, Brasília, Brazil.
Pinto OHB; Departamento de Biologia Celular, Universidade de Brasília, Brasília, Brazil.
Convey P; British Antarctic Survey, NERC, High Cross, Madingley Road, Cambridge, CB3 0ET, UK.
Carvalho-Silva M; Departamento de Botânica, Universidade de Brasília, Brasília, Brazil.
Rosa CA; Departamento de Microbiologia, Laboratório de Microbiologia Polar e Conexões Tropicais, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, P. O. Box 486, Belo Horizonte, MG, CEP 31270-901, Brazil.
Rosa LH; Departamento de Microbiologia, Laboratório de Microbiologia Polar e Conexões Tropicais, Departamento de Microbiologia, Instituto de Ciências Biológicas, Universidade Federal de Minas Gerais, P. O. Box 486, Belo Horizonte, MG, CEP 31270-901, Brazil. .
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Źródło :
Extremophiles : life under extreme conditions [Extremophiles] 2021 Jan; Vol. 25 (1), pp. 77-84. Date of Electronic Publication: 2021 Jan 08.
Typ publikacji :
Journal Article
MeSH Terms :
DNA Barcoding, Taxonomic*
Fungi/*classification
Lakes/*microbiology
Antarctic Regions ; Biodiversity ; DNA, Fungal/genetics ; Islands
Czasopismo naukowe
Tytuł :
Poor performance of DNA barcoding and the impact of RAD loci filtering on the species delimitation of an Iberian ant-eating spider.
Autorzy :
Ortiz D; Department of Botany and Zoology, Faculty of Science, Masaryk University, Brno, Czech Republic. Electronic address: .
Pekár S; Department of Botany and Zoology, Faculty of Science, Masaryk University, Brno, Czech Republic.
Bilat J; Geneva Natural History Museum, Geneva, Switzerland.
Alvarez N; Geneva Natural History Museum, Geneva, Switzerland; Department of Genetics & Evolution, University of Geneva, Geneva, Switzerland.
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Źródło :
Molecular phylogenetics and evolution [Mol Phylogenet Evol] 2021 Jan; Vol. 154, pp. 106997. Date of Electronic Publication: 2020 Oct 24.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA Barcoding, Taxonomic*
Genetic Loci*
Phylogeny*
Restriction Mapping*
Sequence Analysis, DNA*
Spiders/*genetics
Animals ; Cell Nucleus/genetics ; Cluster Analysis ; Electron Transport Complex IV/genetics ; Genetics, Population ; Genomics ; Geography ; Likelihood Functions ; Mitochondria/genetics ; Species Specificity ; Spiders/classification
Czasopismo naukowe
Tytuł :
DNA barcoding of primates and the selection of molecular markers using African Great Apes as a model.
Autorzy :
Jackson AS; Oxford Brookes University, Department of Social Sciences, Gipsy Lane, Oxford, OX3 0BP UK, .
Nijman V; Centre for Functional Genomics, Oxford Brookes University, Oxford, OX3 0BP UK, .
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Źródło :
Journal of anthropological sciences = Rivista di antropologia : JASS [J Anthropol Sci] 2020 Dec 31; Vol. 98.
Typ publikacji :
Journal Article
MeSH Terms :
DNA Barcoding, Taxonomic*
Models, Genetic*
Genetic Markers/*genetics
Hominidae/*genetics
Animals ; Anthropology, Physical ; Bacterial Proteins/genetics ; Electron Transport Complex IV/genetics ; Humans ; NADH Dehydrogenase/genetics
Czasopismo naukowe
Tytuł :
Culture-free genome-wide locus sequence typing (GLST) provides new perspectives on Trypanosoma cruzi dispersal and infection complexity.
Autorzy :
Schwabl P; Institute of Biodiversity, Animal Health & Comparative Medicine, University of Glasgow, Glasgow, United Kingdom.
Maiguashca Sánchez J; Centro de Investigación para la Salud en América Latina, Pontificia Universidad Católica del Ecuador, Quito, Ecuador.
Costales JA; Centro de Investigación para la Salud en América Latina, Pontificia Universidad Católica del Ecuador, Quito, Ecuador.
Ocaña-Mayorga S; Centro de Investigación para la Salud en América Latina, Pontificia Universidad Católica del Ecuador, Quito, Ecuador.
Segovia M; Laboratorio de Biología Molecular de Protozoarios, Instituto de Medicina Tropical, Universidad Central de Venezuela, Caracas, Venezuela.
Carrasco HJ; Laboratorio de Biología Molecular de Protozoarios, Instituto de Medicina Tropical, Universidad Central de Venezuela, Caracas, Venezuela.
Hernández C; Grupo de Investigaciones Microbiológicas-UR (GIMUR), Departamento de Biología, Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá, Colombia.
Ramírez JD; Grupo de Investigaciones Microbiológicas-UR (GIMUR), Departamento de Biología, Facultad de Ciencias Naturales, Universidad del Rosario, Bogotá, Colombia.
Lewis MD; London School of Hygiene & Tropical Medicine, Keppel Street, London, United Kingdom.
Grijalva MJ; Centro de Investigación para la Salud en América Latina, Pontificia Universidad Católica del Ecuador, Quito, Ecuador.; Infectious and Tropical Disease Institute, Biomedical Sciences Department, Heritage College of Osteopathic Medicine, Ohio University, Athens, OH, United States of America.
Llewellyn MS; Institute of Biodiversity, Animal Health & Comparative Medicine, University of Glasgow, Glasgow, United Kingdom.
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Źródło :
PLoS genetics [PLoS Genet] 2020 Dec 16; Vol. 16 (12), pp. e1009170. Date of Electronic Publication: 2020 Dec 16 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Genome, Protozoan*
Metagenome*
DNA Barcoding, Taxonomic/*methods
Metagenomics/*methods
Trypanosoma cruzi/*genetics
Whole Genome Sequencing/*methods
Animals ; Costs and Cost Analysis ; DNA Barcoding, Taxonomic/economics ; DNA Barcoding, Taxonomic/standards ; Disease Vectors ; Hemiptera/parasitology ; Metagenomics/economics ; Metagenomics/standards ; Polymorphism, Genetic ; Trypanosoma cruzi/pathogenicity ; Virulence/genetics ; Whole Genome Sequencing/economics ; Whole Genome Sequencing/standards
Czasopismo naukowe
Tytuł :
Environmental DNA metabarcoding reveals winners and losers of global change in coastal waters.
Autorzy :
Gallego R; School of Marine and Environmental Affairs, University of Washington, 3707 Brooklyn Avenue NE, Seattle, WA 98105, USA.
Jacobs-Palmer E; School of Marine and Environmental Affairs, University of Washington, 3707 Brooklyn Avenue NE, Seattle, WA 98105, USA.
Cribari K; School of Marine and Environmental Affairs, University of Washington, 3707 Brooklyn Avenue NE, Seattle, WA 98105, USA.
Kelly RP; School of Marine and Environmental Affairs, University of Washington, 3707 Brooklyn Avenue NE, Seattle, WA 98105, USA.
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Źródło :
Proceedings. Biological sciences [Proc Biol Sci] 2020 Dec 09; Vol. 287 (1940), pp. 20202424. Date of Electronic Publication: 2020 Dec 09.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA Barcoding, Taxonomic*
Environmental DNA*
Aquatic Organisms/*physiology
Biota ; Carbonates ; Diatoms ; Ecosystem ; Haptophyta ; Hydrogen-Ion Concentration ; Plankton ; Salinity ; Seawater ; Temperature
Czasopismo naukowe
Tytuł :
Description of larva and female of Polypedilum (Probolum) bullum Zhang Wang with DNA barcodes.
Autorzy :
Lei QI; National Demonstration Center for Experimental Fisheries, Science Education, Shanghai Ocean University, Shanghai 201306, P. R. China.. .
Chen J
Song C
Qi X
Zhang R
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Źródło :
Zootaxa [Zootaxa] 2020 Dec 02; Vol. 4890 (2), pp. zootaxa.4890.2.6. Date of Electronic Publication: 2020 Dec 02.
Typ publikacji :
Journal Article
MeSH Terms :
Chironomidae*
DNA Barcoding, Taxonomic*
Animals ; Female ; Larva
Czasopismo naukowe
Tytuł :
Freshwater diatom biomonitoring through benthic kick-net metabarcoding.
Autorzy :
Maitland VC; Centre for Biodiversity Genomics & Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada.
Robinson CV; Centre for Biodiversity Genomics & Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada.
Porter TM; Centre for Biodiversity Genomics & Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada.
Hajibabaei M; Centre for Biodiversity Genomics & Department of Integrative Biology, University of Guelph, Guelph, Ontario, Canada.
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Źródło :
PloS one [PLoS One] 2020 Nov 18; Vol. 15 (11), pp. e0242143. Date of Electronic Publication: 2020 Nov 18 (Print Publication: 2020).
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA Barcoding, Taxonomic*
Diatoms/*genetics
Environmental Monitoring/*methods
Periphyton/*genetics
Animals ; Biodiversity ; Biofilms ; Biological Monitoring ; Computational Biology ; DNA/analysis ; Diatoms/physiology ; Ecosystem ; Fresh Water ; High-Throughput Nucleotide Sequencing ; Invertebrates ; Periphyton/physiology ; Rivers ; Water Quality
Czasopismo naukowe
Tytuł :
DNA barcoding reveals cryptic diversity in the underestimated genus Triplophysa (Cypriniformes: Cobitidae, Nemacheilinae) from the northeastern Qinghai-Tibet Plateau.
Autorzy :
Wang T; College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China.; Gansu Key Laboratory of Cold Water Fishes Germplasm Resources and Genetics Breeding, Gansu Fisheries Research Institute, Lanzhou, China.
Zhang YP; Gansu Key Laboratory of Cold Water Fishes Germplasm Resources and Genetics Breeding, Gansu Fisheries Research Institute, Lanzhou, China.
Yang ZY; Gansu Key Laboratory of Cold Water Fishes Germplasm Resources and Genetics Breeding, Gansu Fisheries Research Institute, Lanzhou, China.
Liu Z; College of Animal Science and Technology, Gansu Agricultural University, Lanzhou, China. .
Du YY; Gansu Key Laboratory of Cold Water Fishes Germplasm Resources and Genetics Breeding, Gansu Fisheries Research Institute, Lanzhou, China. .
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Źródło :
BMC evolutionary biology [BMC Evol Biol] 2020 Nov 12; Vol. 20 (1), pp. 151. Date of Electronic Publication: 2020 Nov 12.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
Cypriniformes*/genetics
DNA Barcoding, Taxonomic*
Phylogeny*
Animals ; DNA ; Tibet
Czasopismo naukowe
Tytuł :
Towards modernizing the taxonomy of Mediterranean Culicoides using classical morphology, mtDNA barcoding, and MALDI-TOF MS protein profiling.
Autorzy :
Rot A; Department of Parasitology, Kimron Veterinary Institute, Beit Dagan, Israel.
Meiswinkel R; Rocca di Cave, Via Pratarone 14, Roma 00030, Italy.
Fleker M; Department of Bacteriology, Kimron Veterinary Institute, Beit Dagan, Israel. Electronic address: .
Blum SE; Department of Bacteriology, Kimron Veterinary Institute, Beit Dagan, Israel. Electronic address: .
Behar A; Department of Parasitology, Kimron Veterinary Institute, Beit Dagan, Israel. Electronic address: .
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Źródło :
Acta tropica [Acta Trop] 2020 Nov; Vol. 211, pp. 105628. Date of Electronic Publication: 2020 Jul 10.
Typ publikacji :
Journal Article
MeSH Terms :
DNA Barcoding, Taxonomic*
Phylogeny*
Ceratopogonidae/*classification
DNA, Mitochondrial/*genetics
Insect Proteins/*chemistry
Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization/*methods
Animals ; Ceratopogonidae/anatomy & histology ; Ceratopogonidae/genetics ; Insect Proteins/genetics
Czasopismo naukowe
Tytuł :
Comparing DADA2 and OTU clustering approaches in studying the bacterial communities of atopic dermatitis.
Autorzy :
Barnes CJ; Natural History Museum of Denmark, Department of Biology, University of Copenhagen, Denmark.; The Globe Institute, Faculty of Health, University of Copenhagen, Denmark.
Rasmussen L; The Globe Institute, Faculty of Health, University of Copenhagen, Denmark.
Asplund M; The Globe Institute, Faculty of Health, University of Copenhagen, Denmark.
Knudsen SW; NIVA Denmark Water Research, Njalsgade 76, DK-2300 Copenhagen S, Denmark.
Clausen ML; Department of Dermatology, Bispebjerg Hospital, University of Copenhagen, Denmark.
Agner T; Department of Dermatology, Bispebjerg Hospital, University of Copenhagen, Denmark.
Hansen AJ; The Globe Institute, Faculty of Health, University of Copenhagen, Denmark.
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Źródło :
Journal of medical microbiology [J Med Microbiol] 2020 Nov; Vol. 69 (11), pp. 1293-1302. Date of Electronic Publication: 2020 Sep 23.
Typ publikacji :
Comparative Study; Journal Article
MeSH Terms :
DNA Barcoding, Taxonomic*
Microbiota*
Dermatitis, Atopic/*microbiology
Skin/*microbiology
Staphylococcus aureus/*classification
Adult ; Aged ; Cluster Analysis ; Computational Biology ; Female ; Humans ; Male ; Middle Aged ; RNA, Ribosomal, 16S/genetics ; Young Adult
Czasopismo naukowe
Tytuł :
Detection of chemotherapy-resistant patient-derived acute lymphoblastic leukemia clones in murine xenografts using cellular barcodes.
Autorzy :
Jacobs S; Department of Ageing Biology and Stem Cells, European Research Institute for the Biology of Ageing, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands.
Ausema A; Department of Ageing Biology and Stem Cells, European Research Institute for the Biology of Ageing, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands.
Zwart E; Department of Ageing Biology and Stem Cells, European Research Institute for the Biology of Ageing, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands.
Weersing E; Department of Ageing Biology and Stem Cells, European Research Institute for the Biology of Ageing, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands.
de Haan G; Department of Ageing Biology and Stem Cells, European Research Institute for the Biology of Ageing, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands.
Bystrykh LV; Department of Ageing Biology and Stem Cells, European Research Institute for the Biology of Ageing, University Medical Center Groningen, University of Groningen, Groningen, The Netherlands.
Belderbos ME; Oncode Institute, Utrecht, The Netherlands; Princess Máxima Center for Pediatric Oncology, Utrecht, The Netherlands. Electronic address: .
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Źródło :
Experimental hematology [Exp Hematol] 2020 Nov; Vol. 91, pp. 46-54. Date of Electronic Publication: 2020 Sep 15.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA Barcoding, Taxonomic*
Drug Resistance, Neoplasm*
Clone Cells/*drug effects
Leukemia, B-Cell/*pathology
Neoplastic Stem Cells/*drug effects
Adolescent ; Animals ; DNA, Neoplasm/genetics ; Dexamethasone/pharmacology ; Heterografts ; Humans ; Interleukin Receptor Common gamma Subunit/deficiency ; Methotrexate/pharmacology ; Mice ; Mice, Inbred NOD ; Mice, SCID ; Neoplasm Transplantation ; Selection, Genetic ; Single-Cell Analysis ; Vincristine/pharmacology
Czasopismo naukowe
Tytuł :
Environmental DNA metabarcoding provides enhanced detection of the European eel Anguilla anguilla and fish community structure in pumped river catchments.
Autorzy :
Griffiths NP; Biological and Marine Sciences, Evolutionary Biology Group, University of Hull, Hull, UK.; Biological and Marine Sciences, Hull International Fisheries Institute, University of Hull, Hull, UK.
Bolland JD; Biological and Marine Sciences, Hull International Fisheries Institute, University of Hull, Hull, UK.
Wright RM; Environment Agency, Feering, UK.
Murphy LA; Biological and Marine Sciences, Hull International Fisheries Institute, University of Hull, Hull, UK.
Donnelly RK; Biological and Marine Sciences, Evolutionary Biology Group, University of Hull, Hull, UK.
Watson HV; Biological and Marine Sciences, Evolutionary Biology Group, University of Hull, Hull, UK.
Hänfling B; Biological and Marine Sciences, Evolutionary Biology Group, University of Hull, Hull, UK.
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Źródło :
Journal of fish biology [J Fish Biol] 2020 Nov; Vol. 97 (5), pp. 1375-1384. Date of Electronic Publication: 2020 Sep 30.
Typ publikacji :
Journal Article
MeSH Terms :
Biota*
DNA Barcoding, Taxonomic*
Anguilla/*genetics
Environmental DNA/*genetics
Animals ; Life Cycle Stages ; Rivers
Czasopismo naukowe
Tytuł :
BIOCOM-PIPE: a new user-friendly metabarcoding pipeline for the characterization of microbial diversity from 16S, 18S and 23S rRNA gene amplicons.
Autorzy :
Djemiel C; Agroécologie, AgroSup Dijon, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France.
Dequiedt S; Agroécologie, AgroSup Dijon, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France.
Karimi B; Agroécologie, AgroSup Dijon, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France.
Cottin A; Agroécologie, AgroSup Dijon, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France.
Girier T; Agroécologie, AgroSup Dijon, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France.
El Djoudi Y; Agroécologie, AgroSup Dijon, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France.
Wincker P; CEA/Institut de Biologie François Jacob/Génoscope, 2, Rue Gaston Crémieux, CP5706, 91057, Evry Cedex, France.
Lelièvre M; Agroécologie - Plateforme GenoSol, BP 86510, 21000, Dijon, France.
Mondy S; Agroécologie - Plateforme GenoSol, BP 86510, 21000, Dijon, France.
Chemidlin Prévost-Bouré N; Agroécologie, AgroSup Dijon, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France.
Maron PA; Agroécologie, AgroSup Dijon, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France.
Ranjard L; Agroécologie, AgroSup Dijon, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France.
Terrat S; Agroécologie, AgroSup Dijon, INRAE, Univ. Bourgogne, Univ. Bourgogne Franche-Comté, 21000, Dijon, France. .
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Źródło :
BMC bioinformatics [BMC Bioinformatics] 2020 Oct 31; Vol. 21 (1), pp. 492. Date of Electronic Publication: 2020 Oct 31.
Typ publikacji :
Journal Article
MeSH Terms :
Biodiversity*
DNA Barcoding, Taxonomic*
Genes, rRNA*
Software*
Archaea/*genetics
Bacteria/*genetics
Computational Biology/*methods
Fungi/*genetics
Cluster Analysis ; Computer Simulation ; Databases, Genetic ; Microbiota/genetics ; RNA, Ribosomal, 16S/genetics ; RNA, Ribosomal, 23S/genetics ; Soil Microbiology
Czasopismo naukowe
Tytuł :
A trophic latitudinal gradient revealed in anchovy and sardine from the Western Mediterranean Sea using a multi-proxy approach.
Autorzy :
Bachiller E; Institut de Ciències del Mar (ICM-CSIC), Passeig Marítim de la Barceloneta, 37-49, 08003, Barcelona, Spain. .; AZTI, Sustainable Fisheries Management (Data), Basque Research and Technology Alliance (BRTA), Txatxarramendi uhartea z/g, 48395, Sukarrieta, Bizkaia (Basque Country), Spain. .
Albo-Puigserver M; Institut de Ciències del Mar (ICM-CSIC), Passeig Marítim de la Barceloneta, 37-49, 08003, Barcelona, Spain.
Giménez J; Institut de Ciències del Mar (ICM-CSIC), Passeig Marítim de la Barceloneta, 37-49, 08003, Barcelona, Spain.
Pennino MG; Instituto Español de Oceanografía, Centro Oceanográfico de Vigo, Subida Radio Faro, 50, 36390, Vigo, Spain.
Marí-Mena N; AllGenetics and Biology SL, Edificio CICA, Campus de Elviña, 15008, A Coruña, Spain.
Esteban A; Instituto Español de Oceanografía, Centro Oceanográfico de Murcia, Varadero 1 Apdo 22, 30740, San Pedro del Pinatar, Murcia, Spain.
Lloret-Lloret E; Institut de Ciències del Mar (ICM-CSIC), Passeig Marítim de la Barceloneta, 37-49, 08003, Barcelona, Spain.
Jadaud A; Marine Biodiversity, Exploitation and Conservation (MARBEC), Ifremer, University Montpellier, CNRS, IRD, Sète, France.
Carro B; AllGenetics and Biology SL, Edificio CICA, Campus de Elviña, 15008, A Coruña, Spain.
Bellido JM; Instituto Español de Oceanografía, Centro Oceanográfico de Murcia, Varadero 1 Apdo 22, 30740, San Pedro del Pinatar, Murcia, Spain.
Coll M; Institut de Ciències del Mar (ICM-CSIC), Passeig Marítim de la Barceloneta, 37-49, 08003, Barcelona, Spain.
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Źródło :
Scientific reports [Sci Rep] 2020 Oct 19; Vol. 10 (1), pp. 17598. Date of Electronic Publication: 2020 Oct 19.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA Barcoding, Taxonomic*
Diet*
Fishes/*genetics
Predatory Behavior/*physiology
Animals ; Ecosystem ; Gastrointestinal Contents ; Mediterranean Sea ; Seafood ; Seasons
Czasopismo naukowe
Tytuł :
Environmental DNA assessment of airborne plant and fungal seasonal diversity.
Autorzy :
Banchi E; Department of Life Sciences, University of Trieste, via Giorgieri 10, I-34127 Trieste, Italy; National Institute of Oceanography and Applied Geophysics - OGS, via Piccard 54, I-34151 Trieste, Italy.
Ametrano CG; Department of Life Sciences, University of Trieste, via Giorgieri 10, I-34127 Trieste, Italy.
Tordoni E; Department of Life Sciences, University of Trieste, via Giorgieri 10, I-34127 Trieste, Italy.
Stanković D; Department of Life Sciences, University of Trieste, via Giorgieri 10, I-34127 Trieste, Italy; Marine Biology Station, National Institute of Biology, Fornače 41, SLO-6330 Piran, Slovenia.
Ongaro S; Department of Life Sciences, University of Trieste, via Giorgieri 10, I-34127 Trieste, Italy.
Tretiach M; Department of Life Sciences, University of Trieste, via Giorgieri 10, I-34127 Trieste, Italy.
Pallavicini A; Department of Life Sciences, University of Trieste, via Giorgieri 10, I-34127 Trieste, Italy; National Institute of Oceanography and Applied Geophysics - OGS, via Piccard 54, I-34151 Trieste, Italy. Electronic address: .
Muggia L; Department of Life Sciences, University of Trieste, via Giorgieri 10, I-34127 Trieste, Italy. Electronic address: .
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Corporate Authors :
ARPA Working Group
Źródło :
The Science of the total environment [Sci Total Environ] 2020 Oct 10; Vol. 738, pp. 140249. Date of Electronic Publication: 2020 Jun 18.
Typ publikacji :
Journal Article
MeSH Terms :
DNA Barcoding, Taxonomic*
Environmental DNA*
Fungi/genetics ; Italy ; Seasons
Czasopismo naukowe
Tytuł :
Widespread Torix Rickettsia in New Zealand amphipods and the use of blocking primers to rescue host COI sequences.
Autorzy :
Park E; Department of Zoology, University of Otago, 340 Great King Street, Dunedin, 9016, New Zealand. .
Poulin R; Department of Zoology, University of Otago, 340 Great King Street, Dunedin, 9016, New Zealand.
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Źródło :
Scientific reports [Sci Rep] 2020 Oct 08; Vol. 10 (1), pp. 16842. Date of Electronic Publication: 2020 Oct 08.
Typ publikacji :
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms :
DNA Barcoding, Taxonomic*
Host Microbial Interactions*
Amphipoda/*genetics
Amphipoda/*microbiology
Electron Transport Complex IV/*genetics
Rickettsia/*genetics
Animals ; DNA, Bacterial/genetics ; Genetic Variation ; Genetics, Population ; New Zealand ; Phylogeny ; Rickettsia/physiology ; Symbiosis/genetics
Czasopismo naukowe

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