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Wyszukujesz frazę ""proteogenomics"" wg kryterium: Temat


Tytuł:
SpliceProt 2.0: A Sequence Repository of Human, Mouse, and Rat Proteoforms.
Autorzy:
Santos LGC; Instituto Carlos Chagas, Fundação Oswaldo Cruz (FIOCRUZ), Rua Professor Algacyr Munhoz Mader 3775, Cidade Industrial De Curitiba, Curitiba 81310-020, PR, Brazil.
Parreira VDSC; Instituto Carlos Chagas, Fundação Oswaldo Cruz (FIOCRUZ), Rua Professor Algacyr Munhoz Mader 3775, Cidade Industrial De Curitiba, Curitiba 81310-020, PR, Brazil.
da Silva EMG; Instituto Carlos Chagas, Fundação Oswaldo Cruz (FIOCRUZ), Rua Professor Algacyr Munhoz Mader 3775, Cidade Industrial De Curitiba, Curitiba 81310-020, PR, Brazil.; Laboratory of Toxinology, Oswaldo Cruz Institute, Fundação Oswaldo Cruz (FIOCRUZ), Av. Brazil 4036, Campus Maré, Rio de Janeiro 21040-361, RJ, Brazil.
Santos MDM; Instituto Carlos Chagas, Fundação Oswaldo Cruz (FIOCRUZ), Rua Professor Algacyr Munhoz Mader 3775, Cidade Industrial De Curitiba, Curitiba 81310-020, PR, Brazil.
Fernandes ADF; Instituto Carlos Chagas, Fundação Oswaldo Cruz (FIOCRUZ), Rua Professor Algacyr Munhoz Mader 3775, Cidade Industrial De Curitiba, Curitiba 81310-020, PR, Brazil.
Neves-Ferreira AGDC; Laboratory of Toxinology, Oswaldo Cruz Institute, Fundação Oswaldo Cruz (FIOCRUZ), Av. Brazil 4036, Campus Maré, Rio de Janeiro 21040-361, RJ, Brazil.
Carvalho PC; Instituto Carlos Chagas, Fundação Oswaldo Cruz (FIOCRUZ), Rua Professor Algacyr Munhoz Mader 3775, Cidade Industrial De Curitiba, Curitiba 81310-020, PR, Brazil.
Freitas FCP; Instituto Carlos Chagas, Fundação Oswaldo Cruz (FIOCRUZ), Rua Professor Algacyr Munhoz Mader 3775, Cidade Industrial De Curitiba, Curitiba 81310-020, PR, Brazil.; Departamento de Genética e Evolução, Universidade Federal de São Carlos (UFSCar), Rodovia Washington Luis, Km 235, São Carlos 13565-905, SP, Brazil.
Passetti F; Instituto Carlos Chagas, Fundação Oswaldo Cruz (FIOCRUZ), Rua Professor Algacyr Munhoz Mader 3775, Cidade Industrial De Curitiba, Curitiba 81310-020, PR, Brazil.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2024 Jan 18; Vol. 25 (2). Date of Electronic Publication: 2024 Jan 18.
Typ publikacji:
Journal Article
MeSH Terms:
Proteomics*
Proteogenomics*
Rats ; Mice ; Humans ; Animals ; Databases, Protein ; Knowledge Bases ; Proteome/genetics
Czasopismo naukowe
Tytuł:
Proteogenomics unveils mechanistic insights to precision oncology.
Autorzy:
Dou Y; Lester and Sue Smith Breast Center, Baylor College of Medicine, Houston, Texas, USA.; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.; Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, Texas, USA.
Katsnelson L; NYU Grossman School of Medicine, Institute for Systems Genetics, New York, New York, USA.; Department of Biochemistry and Molecular Pharmacology, NYU Grossman School of Medicine, New York, New York, USA.
Zhang B; Lester and Sue Smith Breast Center, Baylor College of Medicine, Houston, Texas, USA.; Department of Molecular and Human Genetics, Baylor College of Medicine, Houston, Texas, USA.; Dan L Duncan Comprehensive Cancer Center, Baylor College of Medicine, Houston, Texas, USA.
Fenyö D; NYU Grossman School of Medicine, Institute for Systems Genetics, New York, New York, USA.; Department of Biochemistry and Molecular Pharmacology, NYU Grossman School of Medicine, New York, New York, USA.
Liu T; Biological Sciences Division, Pacific Northwest National Laboratory, Richland, Washington, USA.
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Źródło:
Clinical and translational medicine [Clin Transl Med] 2023 Nov; Vol. 13 (11), pp. e1477.
Typ publikacji:
Journal Article
MeSH Terms:
Proteogenomics*
Neoplasms*/genetics
Humans ; Precision Medicine ; Mass Spectrometry ; Biomarkers, Tumor
Czasopismo naukowe
Tytuł:
Spleen-based proteogenomics reveals that Escherichia coli infection induces activation of phagosome maturation pathway in chicken.
Autorzy:
Shi J; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences Beijing, Research Unit of Proteomics & Research and Development of New Drug of Chinese Academy of Medical Sciences, Institute of Lifeomics, Beijing, China.
Jiang S; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences Beijing, Research Unit of Proteomics & Research and Development of New Drug of Chinese Academy of Medical Sciences, Institute of Lifeomics, Beijing, China.
Wang Q; College of veterinary medicine, Yangzhou University, Yangzhou, China.
Dong J; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences Beijing, Research Unit of Proteomics & Research and Development of New Drug of Chinese Academy of Medical Sciences, Institute of Lifeomics, Beijing, China.
Zhu H; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences Beijing, Research Unit of Proteomics & Research and Development of New Drug of Chinese Academy of Medical Sciences, Institute of Lifeomics, Beijing, China.; Department of Biomedicine, School of Medicine, Guizhou University, Guiyang, China.
Wang P; College of veterinary medicine, Yangzhou University, Yangzhou, China.
Meng S; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences Beijing, Research Unit of Proteomics & Research and Development of New Drug of Chinese Academy of Medical Sciences, Institute of Lifeomics, Beijing, China.
Zhang Z; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences Beijing, Research Unit of Proteomics & Research and Development of New Drug of Chinese Academy of Medical Sciences, Institute of Lifeomics, Beijing, China.
Chang L; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences Beijing, Research Unit of Proteomics & Research and Development of New Drug of Chinese Academy of Medical Sciences, Institute of Lifeomics, Beijing, China.
Wang G; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences Beijing, Research Unit of Proteomics & Research and Development of New Drug of Chinese Academy of Medical Sciences, Institute of Lifeomics, Beijing, China.
Xu X; College of veterinary medicine, Yangzhou University, Yangzhou, China.
Xu P; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences Beijing, Research Unit of Proteomics & Research and Development of New Drug of Chinese Academy of Medical Sciences, Institute of Lifeomics, Beijing, China.; Department of Biomedicine, School of Medicine, Guizhou University, Guiyang, China.; Program of Environmental Toxicology, School of Public Health, China Medical University, Shenyang, China.
Zhang Y; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences Beijing, Research Unit of Proteomics & Research and Development of New Drug of Chinese Academy of Medical Sciences, Institute of Lifeomics, Beijing, China.
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Źródło:
Virulence [Virulence] 2023 Dec; Vol. 14 (1), pp. 2150453.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Escherichia coli Infections*/veterinary
Escherichia coli Infections*/pathology
Poultry Diseases*/microbiology
Poultry Diseases*/pathology
Proteogenomics*
Animals ; Chickens ; Escherichia coli/metabolism ; Phagosomes ; Spleen/pathology
Czasopismo naukowe
Tytuł:
A human proteogenomic-cellular framework identifies KIF5A as a modulator of astrocyte process integrity with relevance to ALS.
Autorzy:
Szebényi K; John van Geest Centre for Brain Repair, Department of Clinical Neurosciences, University of Cambridge, Cambridge Biomedical Campus, Cambridge, CB2 0PY, UK.; Institute of Enzymology, Research Centre for Natural Sciences, Budapest, 1117, Hungary.
Barrio-Hernandez I; European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, CB10 1SD, UK.
Gibbons GM; John van Geest Centre for Brain Repair, Department of Clinical Neurosciences, University of Cambridge, Cambridge Biomedical Campus, Cambridge, CB2 0PY, UK.
Biasetti L; Department of Basic and Clinical Neuroscience, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, SE5 8AF, UK.
Troakes C; Department of Basic and Clinical Neuroscience, Institute of Psychiatry, Psychology and Neuroscience, King's College London, London, SE5 8AF, UK.
Beltrao P; European Bioinformatics Institute, Wellcome Genome Campus, Hinxton, CB10 1SD, UK. .; Institute of Molecular Systems Biology, ETH Zürich, Zürich, 8093, Switzerland. .
Lakatos A; John van Geest Centre for Brain Repair, Department of Clinical Neurosciences, University of Cambridge, Cambridge Biomedical Campus, Cambridge, CB2 0PY, UK. .; Wellcome Trust-MRC Cambridge Stem Cell Institute, Cambridge Biomedical Campus, Cambridge, CB2 0AW, UK. .
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Źródło:
Communications biology [Commun Biol] 2023 Jun 29; Vol. 6 (1), pp. 678. Date of Electronic Publication: 2023 Jun 29.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Amyotrophic Lateral Sclerosis*/genetics
Proteogenomics*
Humans ; Astrocytes ; Genome-Wide Association Study ; Kinesins/genetics
Czasopismo naukowe
Tytuł:
Viral proteogenomic and expression profiling during productive replication of a skin-tropic herpesvirus in the natural host.
Autorzy:
Volkening JD; BASE2BIO, Oshkosh, Wisconsin, United States of America.
Spatz SJ; US National Poultry Research Laboratory, ARS, USDA, Athens, Georgia, United States of America.
Ponnuraj N; Department of Pathobiology, College of Veterinary Medicine, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America.
Akbar H; Department of Pathobiology, College of Veterinary Medicine, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America.
Arrington JV; Protein Sciences Facility, Roy J. Carver Biotechnology Center, University of Illinois Urbana-Champaign, Urbana, Illinois, United States of America.
Vega-Rodriguez W; Department of Pathobiology, College of Veterinary Medicine, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America.
Jarosinski KW; Department of Pathobiology, College of Veterinary Medicine, University of Illinois at Urbana-Champaign, Urbana, Illinois, United States of America.
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Źródło:
PLoS pathogens [PLoS Pathog] 2023 Jun 08; Vol. 19 (6), pp. e1011204. Date of Electronic Publication: 2023 Jun 08 (Print Publication: 2023).
Typ publikacji:
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Marek Disease*
Proteogenomics*
Herpesviridae*/metabolism
Herpesvirus 2, Gallid*/genetics
Humans ; Animals ; Chickens
Czasopismo naukowe
Tytuł:
Integrated proteogenomic characterization reveals an imbalanced hepatocellular carcinoma microenvironment after incomplete radiofrequency ablation.
Autorzy:
Shi ZR; Department of Hepatobiliary Surgery, The First Affiliated Hospital of Chongqing Medical University, No. Youyi Rd, Chongqing, 400016, China.
Duan YX; Department of Hepatobiliary Surgery, The First Affiliated Hospital of Chongqing Medical University, No. Youyi Rd, Chongqing, 400016, China.
Cui F; Department of Laboratory Medicine, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China.
Wu ZJ; Department of Hepatobiliary Surgery, The First Affiliated Hospital of Chongqing Medical University, No. Youyi Rd, Chongqing, 400016, China.
Li MP; Department of Ultrasound, The First Affiliated Hospital of Chongqing Medical University, Chongqing, China.
Song PP; National Center for Global Health and Medicine, Tokyo, Japan.
Peng QL; Faculty of Basic Medical Sciences, Chongqing Medical University, Chongqing, 400016, China.
Ye WT; Department of Hepatobiliary Surgery, The First Affiliated Hospital of Chongqing Medical University, No. Youyi Rd, Chongqing, 400016, China.
Yin KL; Department of Hepatobiliary Surgery, The First Affiliated Hospital of Chongqing Medical University, No. Youyi Rd, Chongqing, 400016, China.
Kang MQ; Department of Hepatobiliary Surgery, The First Affiliated Hospital of Chongqing Medical University, No. Youyi Rd, Chongqing, 400016, China.
Yu YX; Department of Hepatobiliary Surgery, The First Affiliated Hospital of Chongqing Medical University, No. Youyi Rd, Chongqing, 400016, China.
Yang J; Department of Hepatobiliary Surgery, The First Affiliated Hospital of Chongqing Medical University, No. Youyi Rd, Chongqing, 400016, China.
Tang W; National Center for Global Health and Medicine, Tokyo, Japan.
Liao R; Department of Hepatobiliary Surgery, The First Affiliated Hospital of Chongqing Medical University, No. Youyi Rd, Chongqing, 400016, China. .
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Źródło:
Journal of experimental & clinical cancer research : CR [J Exp Clin Cancer Res] 2023 May 25; Vol. 42 (1), pp. 133. Date of Electronic Publication: 2023 May 25.
Typ publikacji:
Journal Article
MeSH Terms:
Carcinoma, Hepatocellular*/genetics
Carcinoma, Hepatocellular*/surgery
Carcinoma, Hepatocellular*/metabolism
Liver Neoplasms*/genetics
Liver Neoplasms*/surgery
Liver Neoplasms*/metabolism
Proteogenomics*
Radiofrequency Ablation*
Humans ; Mice ; Animals ; CD8-Positive T-Lymphocytes/metabolism ; Phosphatidylinositol 3-Kinases ; Cell Line, Tumor ; Tumor Microenvironment
Czasopismo naukowe
Tytuł:
Proteogenomic characterization of ferroptosis regulators reveals therapeutic potential in glioblastoma.
Autorzy:
Wang X; Department of Neurosurgery, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China. .
Zhang H; Department of Hematology, Liaocheng People's Hospital, Liaocheng, China.
Zhang M; Department of Neurosurgery, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China.
Zhang X; Department of Neurosurgery, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China.
Mao W; Department of Neurosurgery, The First Affiliated Hospital of Zhengzhou University, Zhengzhou, China.
Gao M; Department of Neurosurgery, First Affiliated Hospital of Harbin Medical University, Harbin, China.
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Źródło:
BMC cancer [BMC Cancer] 2023 May 08; Vol. 23 (1), pp. 415. Date of Electronic Publication: 2023 May 08.
Typ publikacji:
Journal Article
MeSH Terms:
Glioblastoma*/drug therapy
Glioblastoma*/genetics
Ferroptosis*/genetics
Proteogenomics*
Glioma*
Humans ; Proteomics
Czasopismo naukowe
Tytuł:
Identifying Natural Bioactive Peptides from the Common Octopus ( Octopus vulgaris Cuvier, 1797) Skin Mucus By-Products Using Proteogenomic Analysis.
Autorzy:
Pérez-Polo S; Instituto de Investigaciones Marinas (IIM), CSIC, Eduardo Cabello 6, 36208 Vigo, Spain.
Imran MAS; Instituto de Investigaciones Marinas (IIM), CSIC, Eduardo Cabello 6, 36208 Vigo, Spain.
Dios S; Instituto de Investigaciones Marinas (IIM), CSIC, Eduardo Cabello 6, 36208 Vigo, Spain.
Pérez J; Instituto de Investigaciones Marinas (IIM), CSIC, Eduardo Cabello 6, 36208 Vigo, Spain.
Barros L; Instituto de Investigaciones Marinas (IIM), CSIC, Eduardo Cabello 6, 36208 Vigo, Spain.
Carrera M; Instituto de Investigaciones Marinas (IIM), CSIC, Eduardo Cabello 6, 36208 Vigo, Spain.
Gestal C; Instituto de Investigaciones Marinas (IIM), CSIC, Eduardo Cabello 6, 36208 Vigo, Spain.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2023 Apr 12; Vol. 24 (8). Date of Electronic Publication: 2023 Apr 12.
Typ publikacji:
Journal Article
MeSH Terms:
Proteogenomics*
Octopodiformes*/chemistry
Octopodiformes*/metabolism
Animals ; Proteomics/methods ; Proteome/metabolism ; Chromatography, Liquid ; Tandem Mass Spectrometry ; Peptides/metabolism ; Mucus/metabolism
Czasopismo naukowe
Tytuł:
Proteogenomic analysis of Serratia marcescens using computational subtractive genomics approach.
Autorzy:
D'Souza SE; Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, Pakistan.
Khan K; Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, Pakistan.
Uddin R; Dr. Panjwani Center for Molecular Medicine and Drug Research, International Center for Chemical and Biological Sciences, University of Karachi, Karachi, Pakistan.
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Źródło:
PloS one [PLoS One] 2023 Apr 10; Vol. 18 (4), pp. e0283993. Date of Electronic Publication: 2023 Apr 10 (Print Publication: 2023).
Typ publikacji:
Journal Article
MeSH Terms:
Serratia marcescens*/genetics
Proteogenomics*
Genomics/methods ; Computational Biology/methods ; Drug Resistance, Multiple
Czasopismo naukowe
Tytuł:
PGNneo: A Proteogenomics-Based Neoantigen Prediction Pipeline in Noncoding Regions.
Autorzy:
Tan X; Department of Bioinformatics and Biostatistics, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China.; Shanghai-MOST Key Laboratory of Health and Disease Genomics & Institute of Genome and Bioinformatics, Shanghai Institute for Biomedical and Pharmaceutical Technologies, Shanghai 200237, China.
Xu L; Shanghai-MOST Key Laboratory of Health and Disease Genomics & Institute of Genome and Bioinformatics, Shanghai Institute for Biomedical and Pharmaceutical Technologies, Shanghai 200237, China.
Jian X; Shanghai-MOST Key Laboratory of Health and Disease Genomics & Institute of Genome and Bioinformatics, Shanghai Institute for Biomedical and Pharmaceutical Technologies, Shanghai 200237, China.
Ouyang J; Shanghai-MOST Key Laboratory of Health and Disease Genomics & Institute of Genome and Bioinformatics, Shanghai Institute for Biomedical and Pharmaceutical Technologies, Shanghai 200237, China.
Hu B; Liver Cancer Institute, Fudan University, Shanghai 200032, China.
Yang X; Liver Cancer Institute, Fudan University, Shanghai 200032, China.
Wang T; Department of Bioinformatics and Biostatistics, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China.
Xie L; Shanghai-MOST Key Laboratory of Health and Disease Genomics & Institute of Genome and Bioinformatics, Shanghai Institute for Biomedical and Pharmaceutical Technologies, Shanghai 200237, China.
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Źródło:
Cells [Cells] 2023 Mar 01; Vol. 12 (5). Date of Electronic Publication: 2023 Mar 01.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Carcinoma, Hepatocellular*
Proteogenomics*
Liver Neoplasms*
Humans ; Antigens, Neoplasm ; Reproducibility of Results ; Peptides ; Ubiquitin-Protein Ligases
Czasopismo naukowe
Tytuł:
Proteogenomics decodes the evolution of human ipsilateral breast cancer.
Autorzy:
De Marchi T; Department of Clinical Sciences Lund, Division of Oncology, Lund University, Lund, Sweden. tommaso.de_.
Pyl PT; Department of Laboratory Medicine, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Lund, Sweden.
Sjöström M; Department of Clinical Sciences Lund, Division of Oncology, Lund University, Lund, Sweden.; Department of Radiation Oncology, University of California San Francisco, San Francisco, USA.
Reinsbach SE; Department of Biology and Biological Engineering, National Bioinformatics Infrastructure Sweden, Science for Life Laboratory, Chalmers University of Technology, Gothenburg, Sweden.
DiLorenzo S; National Bioinformatics Infrastructure Sweden, Uppsala University, Science for Life Laboratory, Department of Cell and Molecular Biology, Uppsala, Sweden.
Nystedt B; National Bioinformatics Infrastructure Sweden, Uppsala University, Science for Life Laboratory, Department of Cell and Molecular Biology, Uppsala, Sweden.
Tran L; Department of Clinical Sciences Lund, Division of Oncology, Lund University, Lund, Sweden.
Pekar G; Department of Clinical Sciences, Division of Oncology and Pathology, Lund University, Skåne University Hospital, Lund, Sweden.
Wärnberg F; Department of Surgery, Institute of Clinical Sciences, Sahlgrenska Academy at the University of Gothenburg, Gothenburg, Sweden.
Fredriksson I; Department of Molecular Medicine and Surgery, Karolinska Institutet, Stockholm, Sweden.; Department of Breast, Endocrine Tumors and Sarcoma, Karolinska University Hospital, Stockholm, Sweden.
Malmström P; Department of Clinical Sciences Lund, Division of Oncology, Lund University, Lund, Sweden.; Department of Haematology, Oncology, and Radiation Physics, Skåne University Hospital, Lund, Sweden.
Fernö M; Department of Clinical Sciences Lund, Division of Oncology, Lund University, Lund, Sweden.
Malmström L; Department of Clinical Sciences Lund, Division of Infection Medicine, Faculty of Medicine, Lund University, Lund, Sweden.
Malmstöm J; Department of Clinical Sciences Lund, Division of Infection Medicine, Faculty of Medicine, Lund University, Lund, Sweden.
Niméus E; Department of Clinical Sciences Lund, Division of Oncology, Lund University, Lund, Sweden. .; Department of Surgery, Skåne University Hospital, Lund, Sweden. .
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Źródło:
Communications biology [Commun Biol] 2023 Feb 02; Vol. 6 (1), pp. 139. Date of Electronic Publication: 2023 Feb 02.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Breast Neoplasms*/genetics
Breast Neoplasms*/pathology
Proteogenomics*
Mammary Neoplasms, Animal*
Humans ; Animals ; Female ; Mastectomy, Segmental ; Neoplasm Recurrence, Local/genetics ; Neoplasm Recurrence, Local/pathology ; Combined Modality Therapy ; Cytidine Deaminase ; Minor Histocompatibility Antigens
Czasopismo naukowe
Tytuł:
Proteogenomic landscape and clinical characterization of GH-producing pituitary adenomas/somatotroph pituitary neuroendocrine tumors.
Autorzy:
Yamato A; Department of Molecular Diagnosis, Graduate School of Medicine, Chiba University, Chiba, Japan.
Nagano H; Department of Molecular Diagnosis, Graduate School of Medicine, Chiba University, Chiba, Japan.
Gao Y; Department of Molecular Diagnosis, Graduate School of Medicine, Chiba University, Chiba, Japan.; Department of Neurological Surgery, Chiba University Hospital, Chiba, Japan.
Matsuda T; Department of Molecular Diagnosis, Graduate School of Medicine, Chiba University, Chiba, Japan.; Department of Neurological Surgery, Chiba University Hospital, Chiba, Japan.
Hashimoto N; Department of Molecular Diagnosis, Graduate School of Medicine, Chiba University, Chiba, Japan.; Research Institute of Disaster Medicine, Chiba University, Chiba, Japan.
Nakayama A; Department of Molecular Diagnosis, Graduate School of Medicine, Chiba University, Chiba, Japan.
Yamagata K; Department of Molecular Diagnosis, Graduate School of Medicine, Chiba University, Chiba, Japan.
Yokoyama M; Department of Molecular Diagnosis, Graduate School of Medicine, Chiba University, Chiba, Japan.
Gong Y; Department of Molecular Diagnosis, Graduate School of Medicine, Chiba University, Chiba, Japan.
Shi X; Department of Molecular Diagnosis, Graduate School of Medicine, Chiba University, Chiba, Japan.
Zhahara SN; Department of Molecular Diagnosis, Graduate School of Medicine, Chiba University, Chiba, Japan.
Kono T; Department of Molecular Diagnosis, Graduate School of Medicine, Chiba University, Chiba, Japan.
Taki Y; Department of Molecular Diagnosis, Graduate School of Medicine, Chiba University, Chiba, Japan.
Furuki N; Department of Molecular Diagnosis, Graduate School of Medicine, Chiba University, Chiba, Japan.
Nishimura M; Division of Laboratory Medicine, Chiba University Hospital, Chiba, Japan.
Horiguchi K; Department of Neurological Surgery, Chiba University Hospital, Chiba, Japan.
Iwadate Y; Department of Neurological Surgery, Chiba University Hospital, Chiba, Japan.
Fukuyo M; Department of Molecular Oncology, Graduate School of Medicine, Chiba University, Chiba, Japan.
Rahmutulla B; Department of Molecular Oncology, Graduate School of Medicine, Chiba University, Chiba, Japan.
Kaneda A; Department of Molecular Oncology, Graduate School of Medicine, Chiba University, Chiba, Japan.
Hasegawa Y; Department of Applied Genomics, Kazusa DNA Research Institute, Chiba, Japan.
Kawashima Y; Department of Applied Genomics, Kazusa DNA Research Institute, Chiba, Japan.
Ohara O; Department of Applied Genomics, Kazusa DNA Research Institute, Chiba, Japan.
Ishikawa T; Advanced Data Science Project, RIKEN Information R&D and Strategy Headquarters, RIKEN, Kanagawa, Japan.; Artificial Intelligence Medicine, Graduate School of Medicine, Chiba University, Chiba, Japan.; Department of Extended Intelligence for Medicine, The Ishii-Ishibashi Laboratory, Keio University School of Medicine, Tokyo, Japan.
Kawakami E; Advanced Data Science Project, RIKEN Information R&D and Strategy Headquarters, RIKEN, Kanagawa, Japan.; Artificial Intelligence Medicine, Graduate School of Medicine, Chiba University, Chiba, Japan.
Nakamura Y; Division of Pathology, Faculty of Medicine, Tohoku Medical and Pharmaceutical University, Miyagi, Japan.
Inoshita N; Department of Pathology, Moriyama Memorial Hospital, Tokyo, Japan.
Yamada S; Hypothalamic and Pituitary Center, Moriyama Neurological Center Hospital, Tokyo, Japan.
Fukuhara N; Department of Hypothalamic and Pituitary Surgery, Toranomon Hospital, Tokyo, Japan.
Nishioka H; Department of Hypothalamic and Pituitary Surgery, Toranomon Hospital, Tokyo, Japan.
Tanaka T; Department of Molecular Diagnosis, Graduate School of Medicine, Chiba University, Chiba, Japan. .; Research Institute of Disaster Medicine, Chiba University, Chiba, Japan. .
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Źródło:
Communications biology [Commun Biol] 2022 Nov 27; Vol. 5 (1), pp. 1304. Date of Electronic Publication: 2022 Nov 27.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Somatotrophs*/metabolism
Somatotrophs*/pathology
Acromegaly*/complications
Acromegaly*/metabolism
Acromegaly*/pathology
Pituitary Neoplasms*/genetics
Pituitary Neoplasms*/metabolism
Pituitary Neoplasms*/pathology
Proteogenomics*
Neuroendocrine Tumors*/genetics
Neuroendocrine Tumors*/pathology
Adenoma*/genetics
Adenoma*/metabolism
Adenoma*/pathology
Growth Hormone-Secreting Pituitary Adenoma*/genetics
Growth Hormone-Secreting Pituitary Adenoma*/complications
Growth Hormone-Secreting Pituitary Adenoma*/pathology
Humans
Czasopismo naukowe
Tytuł:
Proteogenomic insights into the biology and treatment of pancreatic ductal adenocarcinoma.
Autorzy:
Tong Y; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Sun M; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Chen L; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Wang Y; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Li Y; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Li L; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Zhang X; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Cai Y; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Qie J; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Pang Y; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Xu Z; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Zhao J; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Zhang X; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Liu Y; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Tian S; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Qin Z; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Feng J; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Zhang F; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Zhu J; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Xu Y; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Lou W; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Ji Y; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China.
Zhao J; Institute for Development and Regenerative Cardiovascular Medicine, MOE-Shanghai Key Laboratory of Children's Environmental Health, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, 200092, China.; Department of Anatomy and Neuroscience Research Institute, School of Basic Medical Sciences, Zhengzhou University, Zhengzhou, 450001, China.
He F; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China. .; State Key Laboratory of Proteomics, Beijing Proteome Research Center, National Center for Protein Sciences, Beijing, 102206, China. .; Research Unit of Proteomics Driven Cancer Precision Medicine, Chinese Academy of Medical Sciences, Beijing, 102206, China. .
Hou Y; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China. .
Ding C; Institute of Biomedical Sciences, State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Human Phenome Institute, Department of Pathology, Department of General Surgery, Zhongshan Hospital, Fudan University, Shanghai, 200433, China. .
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Źródło:
Journal of hematology & oncology [J Hematol Oncol] 2022 Nov 25; Vol. 15 (1), pp. 168. Date of Electronic Publication: 2022 Nov 25.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Proteogenomics*
Carcinoma, Pancreatic Ductal*/genetics
Carcinoma, Pancreatic Ductal*/pathology
Pancreatic Neoplasms*/drug therapy
Pancreatic Neoplasms*/genetics
Pancreatic Neoplasms*/pathology
Humans ; Proteomics ; Carcinogenesis/genetics ; Cell Transformation, Neoplastic ; Tumor Microenvironment ; Membrane Proteins ; ADAM Proteins ; Ribonucleoproteins ; Pancreatic Neoplasms
Czasopismo naukowe
Tytuł:
False discovery rate: the Achilles' heel of proteogenomics.
Autorzy:
Aggarwal S; Translational Health Science and Technology Institute, NCR Biotech Science Cluster, 3rd milestone, PO Box No. 04, Faridabad-Gurgaon Expressway, Faridabad-121001, Haryana, India.
Raj A; GN Ramachandran Knowledge Centre for Genome Informatics, CSIR-Institute of Genomics & Integrative Biology, South Campus, Mathura Road, New Delhi 110025, India.; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad-201002, India.
Kumar D; GN Ramachandran Knowledge Centre for Genome Informatics, CSIR-Institute of Genomics & Integrative Biology, South Campus, Mathura Road, New Delhi 110025, India.
Dash D; GN Ramachandran Knowledge Centre for Genome Informatics, CSIR-Institute of Genomics & Integrative Biology, South Campus, Mathura Road, New Delhi 110025, India.; Academy of Scientific and Innovative Research (AcSIR), Ghaziabad-201002, India.
Yadav AK; Translational Health Science and Technology Institute, NCR Biotech Science Cluster, 3rd milestone, PO Box No. 04, Faridabad-Gurgaon Expressway, Faridabad-121001, Haryana, India.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2022 Sep 20; Vol. 23 (5).
Typ publikacji:
Journal Article; Review; Research Support, Non-U.S. Gov't
MeSH Terms:
Proteogenomics*/methods
Databases, Protein ; Nucleotides ; Peptides/chemistry ; Proteome ; Proteomics/methods
Czasopismo naukowe
Tytuł:
Tissue-wide cell-specific proteogenomic modeling reveals novel candidate risk genes in autism spectrum disorders.
Autorzy:
Doostparast Torshizi A; Raymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA.
Wang K; Raymond G. Perelman Center for Cellular and Molecular Therapeutics, Children's Hospital of Philadelphia, Philadelphia, PA, 19104, USA. .; Department of Pathology and Laboratory Medicine, Perelman School of Medicine, University of Pennsylvania, Philadelphia, PA, 19104, USA. .
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Źródło:
NPJ systems biology and applications [NPJ Syst Biol Appl] 2022 Sep 06; Vol. 8 (1), pp. 31. Date of Electronic Publication: 2022 Sep 06.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Research Support, N.I.H., Extramural
MeSH Terms:
Autism Spectrum Disorder*/genetics
Autism Spectrum Disorder*/metabolism
Proteogenomics*
Brain/metabolism ; Humans ; Protein Interaction Maps/genetics ; Proteome/metabolism
Czasopismo naukowe
Tytuł:
Integrated proteogenomic characterization of urothelial carcinoma of the bladder.
Autorzy:
Xu N; State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Institute of Biomedical Sciences, Human Phenome Institute, Fudan University, Shanghai, 200433, China.
Yao Z; State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Institute of Biomedical Sciences, Human Phenome Institute, Fudan University, Shanghai, 200433, China.
Shang G; Department of Pathology, Zhongshan Hospital Fudan University, Shanghai, 200032, China.
Ye D; Department of Urology, Fudan University Shanghai Cancer Center, Shanghai, 200032, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, 200032, China.
Wang H; Department of Pathology, Zhongshan Hospital Fudan University, Shanghai, 200032, China.
Zhang H; Department of Urology, Fudan University Shanghai Cancer Center, Shanghai, 200032, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, 200032, China.
Qu Y; Department of Urology, Fudan University Shanghai Cancer Center, Shanghai, 200032, China.; Department of Oncology, Shanghai Medical College, Fudan University, Shanghai, 200032, China.
Xu F; State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Institute of Biomedical Sciences, Human Phenome Institute, Fudan University, Shanghai, 200433, China.
Wang Y; State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Institute of Biomedical Sciences, Human Phenome Institute, Fudan University, Shanghai, 200433, China.
Qin Z; State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Institute of Biomedical Sciences, Human Phenome Institute, Fudan University, Shanghai, 200433, China.
Zhu J; State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Institute of Biomedical Sciences, Human Phenome Institute, Fudan University, Shanghai, 200433, China.
Zhang F; State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Institute of Biomedical Sciences, Human Phenome Institute, Fudan University, Shanghai, 200433, China.
Feng J; State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Institute of Biomedical Sciences, Human Phenome Institute, Fudan University, Shanghai, 200433, China.
Tian S; State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Institute of Biomedical Sciences, Human Phenome Institute, Fudan University, Shanghai, 200433, China.
Liu Y; State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Institute of Biomedical Sciences, Human Phenome Institute, Fudan University, Shanghai, 200433, China.
Zhao J; State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Institute of Biomedical Sciences, Human Phenome Institute, Fudan University, Shanghai, 200433, China.; Institute for Development and Regenerative Cardiovascular Medicine, MOE-Shanghai Key Laboratory of Children's Environmental Health, Xinhua Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai, 200092, China.
Hou J; Department of Pathology, Zhongshan Hospital Fudan University, Shanghai, 200032, China.
Guo J; Department of Urology, Zhongshan Hospital Fudan University, Shanghai, 200032, China. .
Hou Y; Department of Pathology, Zhongshan Hospital Fudan University, Shanghai, 200032, China. .
Ding C; State Key Laboratory of Genetic Engineering and Collaborative Innovation Center for Genetics and Development, School of Life Sciences, Institute of Biomedical Sciences, Human Phenome Institute, Fudan University, Shanghai, 200433, China. .
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Źródło:
Journal of hematology & oncology [J Hematol Oncol] 2022 Jun 03; Vol. 15 (1), pp. 76. Date of Electronic Publication: 2022 Jun 03.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Carcinoma, Transitional Cell*/genetics
Carcinoma, Transitional Cell*/pathology
Proteogenomics*
Urinary Bladder Neoplasms*/genetics
Urinary Bladder Neoplasms*/pathology
Biomarkers, Tumor/genetics ; Endonucleases ; Humans ; Proteomics ; Urinary Bladder/chemistry ; Urinary Bladder/metabolism ; Urinary Bladder/pathology
Czasopismo naukowe
Tytuł:
Prospects and challenges of cancer systems medicine: from genes to disease networks.
Autorzy:
Karimi MR; Department of Cell & Molecular Biology, Semnan University, Semnan, Iran.
Karimi AH; Department of Cell & Molecular Biology, Semnan University, Semnan, Iran.
Abolmaali S; Department of Cell & Molecular Biology, Semnan University, Semnan, Iran.
Sadeghi M; Department of Cell & Molecular Biology, Semnan University, Semnan, Iran.
Schmitz U; Department of Molecular & Cell Biology, James Cook University, Townsville, QLD 4811, Australia.
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Źródło:
Briefings in bioinformatics [Brief Bioinform] 2022 Jan 17; Vol. 23 (1).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't; Review
MeSH Terms:
Neoplasms*/genetics
Proteogenomics*
Genome ; Humans ; Metabolomics/methods ; Reproducibility of Results ; Systems Analysis
Czasopismo naukowe
Tytuł:
Could Causal Discovery in Proteogenomics Assist in Understanding Gene-Protein Relations? A Perennial Fruit Tree Case Study Using Sweet Cherry as a Model.
Autorzy:
Ganopoulou M; School of Informatics, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece.
Michailidis M; Laboratory of Pomology, Department of Horticulture, Aristotle University of Thessaloniki, Thermi, 57001 Thessaloniki, Greece.
Angelis L; School of Informatics, Aristotle University of Thessaloniki, 54124 Thessaloniki, Greece.
Ganopoulos I; Institute of Plant Breeding and Genetic Resources, ELGO-DIMITRA, Thermi, 57001 Thessaloniki, Greece.
Molassiotis A; Laboratory of Pomology, Department of Horticulture, Aristotle University of Thessaloniki, Thermi, 57001 Thessaloniki, Greece.
Xanthopoulou A; Laboratory of Pomology, Department of Horticulture, Aristotle University of Thessaloniki, Thermi, 57001 Thessaloniki, Greece.; Institute of Plant Breeding and Genetic Resources, ELGO-DIMITRA, Thermi, 57001 Thessaloniki, Greece.
Moysiadis T; Institute of Plant Breeding and Genetic Resources, ELGO-DIMITRA, Thermi, 57001 Thessaloniki, Greece.; Department of Computer Science, School of Sciences and Engineering, University of Nicosia, Nicosia 2417, Cyprus.
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Źródło:
Cells [Cells] 2021 Dec 29; Vol. 11 (1). Date of Electronic Publication: 2021 Dec 29.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Genes, Plant*
Models, Biological*
Proteogenomics*
Fruit/*genetics
Plant Proteins/*genetics
Prunus avium/*genetics
Trees/*genetics
Fruit/growth & development ; Gene Expression Regulation, Developmental ; Gene Expression Regulation, Plant ; Gene Ontology ; Gene Regulatory Networks ; Plant Proteins/metabolism ; Prunus avium/growth & development ; Trees/growth & development
Czasopismo naukowe
Tytuł:
Proteogenomics analysis of CUG codon translation in the human pathogen Candida albicans.
Autorzy:
Mühlhausen S; Theoretical Computer Science and Algorithmic Methods Group, Institute of Computer Science, University of Göttingen, Goldschmidtstr. 7, 37077, Göttingen, Germany.
Schmitt HD; Department of Neurobiology, Max-Planck-Institute for Biophysical Chemistry, Am Fassberg 11, 37077, Göttingen, Germany.
Plessmann U; Bioanalytical Mass Spectrometry, Max-Planck-Institute for Biophysical Chemistry, Am Fassberg 11, 37077, Göttingen, Germany.
Mienkus P; Department of Neurobiology, Max-Planck-Institute for Biophysical Chemistry, Am Fassberg 11, 37077, Göttingen, Germany.
Sternisek P; Institute for Medical Microbiology, University Medical Center Göttingen, Kreuzbergring 57, 37075, Göttingen, Germany.
Perl T; Intermediate Care, University Medical Center Göttingen, Robert Koch Strasse 40, 37075, Göttingen, Germany.
Weig M; Institute for Medical Microbiology, University Medical Center Göttingen, Kreuzbergring 57, 37075, Göttingen, Germany.
Urlaub H; Bioanalytical Mass Spectrometry, Max-Planck-Institute for Biophysical Chemistry, Am Fassberg 11, 37077, Göttingen, Germany.; Bioanalytics Group, Department of Clinical Chemistry, University Medical Center Göttingen, Robert Koch Strasse 40, 37075, Göttingen, Germany.
Bader O; Institute for Medical Microbiology, University Medical Center Göttingen, Kreuzbergring 57, 37075, Göttingen, Germany.
Kollmar M; Theoretical Computer Science and Algorithmic Methods Group, Institute of Computer Science, University of Göttingen, Goldschmidtstr. 7, 37077, Göttingen, Germany. .; Group Systems Biology of Motor Proteins, Department of NMR-based Structural Biology, Max-Planck-Institute for Biophysical Chemistry, Am Fassberg 11, 37077, Göttingen, Germany. .
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Źródło:
BMC biology [BMC Biol] 2021 Dec 04; Vol. 19 (1), pp. 258. Date of Electronic Publication: 2021 Dec 04.
Typ publikacji:
Journal Article
MeSH Terms:
Candida albicans*/genetics
Candida albicans*/metabolism
Genetic Code*
Proteogenomics*
Base Sequence ; Codon/genetics
Czasopismo naukowe
Tytuł:
Proteogenomic analysis of Georgfuchsia toluolica revealed unexpected concurrent aerobic and anaerobic toluene degradation.
Autorzy:
Atashgahi S; Laboratory of Microbiology, Wageningen University & Research, Wageningen, 6708 WE, The Netherlands.; Department of Microbiology, IWWR, Radboud University, Heyendaalseweg 135, Nijmegen, 6525 AJ, The Netherlands.; Soehngen Institute of Anaerobic Microbiology, Heyendaalseweg 135, Nijmegen, 6525 AJ, The Netherlands.
Oosterkamp MJ; Laboratory of Microbiology, Wageningen University & Research, Wageningen, 6708 WE, The Netherlands.; Sub-department of Environmental Technology, Wageningen University & Research, Bornse weilanden 9, Wageningen, 6708 DW, The Netherlands.
Peng P; Laboratory of Microbiology, Wageningen University & Research, Wageningen, 6708 WE, The Netherlands.; Department of Civil and Environmental Engineering, University of Michigan, 1351 Beal Avenue, Ann Arbor, MI, 48109-2125, USA.
Frank J; Department of Microbiology, IWWR, Radboud University, Heyendaalseweg 135, Nijmegen, 6525 AJ, The Netherlands.; Soehngen Institute of Anaerobic Microbiology, Heyendaalseweg 135, Nijmegen, 6525 AJ, The Netherlands.
Kraft B; Nordic Center for Earth Evolution, University of Southern Denmark, Odense, DK-5230, Denmark.
Hornung B; Laboratory of Microbiology, Wageningen University & Research, Wageningen, 6708 WE, The Netherlands.; Architecture et Fonction des Macromolécules Biologiques (AFMB), CNRS, 163 avenue de Luminy, 13288 Aix Marseille Université, Marseille, France.
Schleheck D; Department of Biology, University of Konstanz, Konstanz, 78457, Germany.
Lücker S; Department of Microbiology, IWWR, Radboud University, Heyendaalseweg 135, Nijmegen, 6525 AJ, The Netherlands.
Jetten MSM; Department of Microbiology, IWWR, Radboud University, Heyendaalseweg 135, Nijmegen, 6525 AJ, The Netherlands.; Soehngen Institute of Anaerobic Microbiology, Heyendaalseweg 135, Nijmegen, 6525 AJ, The Netherlands.
Stams AJM; Laboratory of Microbiology, Wageningen University & Research, Wageningen, 6708 WE, The Netherlands.; Soehngen Institute of Anaerobic Microbiology, Heyendaalseweg 135, Nijmegen, 6525 AJ, The Netherlands.; Centre of Biological Engineering, University of Minho, Campus de Gualtar, Braga, 4710-057, Portugal.
Smidt H; Laboratory of Microbiology, Wageningen University & Research, Wageningen, 6708 WE, The Netherlands.
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Źródło:
Environmental microbiology reports [Environ Microbiol Rep] 2021 Dec; Vol. 13 (6), pp. 841-851. Date of Electronic Publication: 2021 Aug 09.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Betaproteobacteria*/genetics
Proteogenomics*
Anaerobiosis ; Biodegradation, Environmental ; Ferric Compounds/metabolism ; Toluene/metabolism
SCR Organism:
Georgfuchsia toluolica
Czasopismo naukowe

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