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Tytuł:
Integrative Epigenetic and Molecular Analysis Reveals a Novel Promoter for a New Isoform of the Transcription Factor TEAD4.
Autorzy:
Rashidiani S; Institute of Biochemistry and Medical Chemistry, Medical School, University of Pécs, 7624 Pécs, Hungary.
Mamo G; Institute of Biochemistry and Medical Chemistry, Medical School, University of Pécs, 7624 Pécs, Hungary.
Farkas B; Institute of Biochemistry and Medical Chemistry, Medical School, University of Pécs, 7624 Pécs, Hungary.
Szabadi A; Institute of Biochemistry and Medical Chemistry, Medical School, University of Pécs, 7624 Pécs, Hungary.; Department of Dentistry, Oral and Maxillofacial Surgery, Medical School, University of Pécs, 7623 Pécs, Hungary.
Farkas B; Department of Obstetrics and Gynecology, Medical School, University of Pécs, 7624 Pécs, Hungary.; National Laboratory of Human Reproduction, University of Pécs, 7624 Pécs, Hungary.
Uszkai V; Department of Obstetrics and Gynecology, Medical School, University of Pécs, 7624 Pécs, Hungary.
Császár A; Department of Obstetrics and Gynecology, Medical School, University of Pécs, 7624 Pécs, Hungary.
Brandt B; Department of Medical Biology and Central Electron Microscope Laboratory, Medical School, University of Pécs, 7624 Pécs, Hungary.
Kovács K; Department of Obstetrics and Gynecology, Medical School, University of Pécs, 7624 Pécs, Hungary.; National Laboratory of Human Reproduction, University of Pécs, 7624 Pécs, Hungary.
Pap M; Department of Medical Biology and Central Electron Microscope Laboratory, Medical School, University of Pécs, 7624 Pécs, Hungary.
Rauch TA; Institute of Biochemistry and Medical Chemistry, Medical School, University of Pécs, 7624 Pécs, Hungary.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2024 Feb 13; Vol. 25 (4). Date of Electronic Publication: 2024 Feb 13.
Typ publikacji:
Journal Article
MeSH Terms:
DNA-Binding Proteins*/metabolism
TEA Domain Transcription Factors*/genetics
Transcription Factors*/metabolism
Promoter Regions, Genetic*
Female ; Humans ; Pregnancy ; DNA ; Epigenesis, Genetic ; Protein Isoforms/genetics ; Protein Isoforms/metabolism
Czasopismo naukowe
Tytuł:
Backup transcription factor binding sites protect human genes from mutations in the promoter.
Autorzy:
Brown JC; Department of Microbiology, Immunology and Cancer Biology, University of Virginia School of Medicine, Charlottesville, Virginia, United States of America.
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Źródło:
PloS one [PLoS One] 2023 Aug 31; Vol. 18 (8), pp. e0281569. Date of Electronic Publication: 2023 Aug 31 (Print Publication: 2023).
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Transcription Factors*/metabolism
Promoter Regions, Genetic*/genetics
Gene Expression Regulation*
Brain*/metabolism
Humans ; Binding Sites ; Mutation ; Databases, Genetic ; Liver/metabolism
Czasopismo naukowe
Tytuł:
Roles of MEF2A and HOXA5 in the transcriptional regulation of the bovine Fox O1 gene.
Autorzy:
Wei D; School of Agriculture, Ningxia University, Yinchuan, China.
Wang J; Institute of Animal Sciences, Ningxia Academy of Agricultural and Forestry Sciences, Yinchuan, China.
Jiupan Z; Institute of Animal Sciences, Ningxia Academy of Agricultural and Forestry Sciences, Yinchuan, China.
Khan R; Livestock Management, Breeding and Genetics, The University of Agriculture, Peshawar, Pakistan.
Abbas Raza SH; College of Animal Science and Technology, Northwest A&F University, Yangling, China.
Yaping S; School of Agriculture, Ningxia University, Yinchuan, China.
Chao J; School of Agriculture, Ningxia University, Yinchuan, China.
Ayari-Akkari A; Biology Department, College of Science, King Khalid University, Abha, Saudi Arabia.; Laboratory of Diversity, Management and Conservation of Biological Systems, Faculty of Science of Tunis, University of Tunis El Manar, Tunis, Tunisia.
Ahmed DAEM; Laboratory of Diversity, Management and Conservation of Biological Systems, Faculty of Science of Tunis, University of Tunis El Manar, Tunis, Tunisia.
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Źródło:
Animal biotechnology [Anim Biotechnol] 2023 Dec; Vol. 34 (9), pp. 4367-4379. Date of Electronic Publication: 2022 Nov 30.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Expression Regulation*
Transcription Factors*/genetics
Animals ; Cattle/genetics ; Promoter Regions, Genetic/genetics ; Muscle, Skeletal/metabolism
Czasopismo naukowe
Tytuł:
Pyruvate decarboxylase and thiamine biosynthetic genes are regulated differently by Pdc2 in S. cerevisiae and C. glabrata.
Autorzy:
Iosue CL; Department of Biology, Villanova University, Villanova, Pennsylvania, United States of America.
Ugras JM; Department of Biology, Villanova University, Villanova, Pennsylvania, United States of America.
Bajgain Y; Department of Biology, Villanova University, Villanova, Pennsylvania, United States of America.
Dottor CA; Department of Biology, Villanova University, Villanova, Pennsylvania, United States of America.
Stauffer PL; Department of Biology, Villanova University, Villanova, Pennsylvania, United States of America.
Hopkins RA; Department of Biology, Villanova University, Villanova, Pennsylvania, United States of America.
Lang EC; Department of Biology, Villanova University, Villanova, Pennsylvania, United States of America.
Wykoff DD; Department of Biology, Villanova University, Villanova, Pennsylvania, United States of America.
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Źródło:
PloS one [PLoS One] 2023 Jun 07; Vol. 18 (6), pp. e0286744. Date of Electronic Publication: 2023 Jun 07 (Print Publication: 2023).
Typ publikacji:
Journal Article; Research Support, U.S. Gov't, Non-P.H.S.; Research Support, Non-U.S. Gov't
MeSH Terms:
Saccharomyces cerevisiae*/metabolism
Candida glabrata*/metabolism
Transcription Factors*/metabolism
Fungal Proteins*/metabolism
Pyruvate Decarboxylase*/genetics
Gene Expression Regulation, Fungal*
Thiamine/biosynthesis ; Carboxy-Lyases/genetics ; Promoter Regions, Genetic ; Intrinsically Disordered Proteins/metabolism
Czasopismo naukowe
Tytuł:
Unlocking the strength of inducible promoters in Gram-negative bacteria.
Autorzy:
Carrillo Rincón AF; Department of Biology and Biotechnology, Worcester Polytechnic Institute, Worcester, Massachusetts, USA.
Farny NG; Department of Biology and Biotechnology, Worcester Polytechnic Institute, Worcester, Massachusetts, USA.
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Źródło:
Microbial biotechnology [Microb Biotechnol] 2023 May; Vol. 16 (5), pp. 961-976. Date of Electronic Publication: 2023 Feb 03.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Transcription Factors*/metabolism
DNA-Directed RNA Polymerases*/genetics
DNA-Directed RNA Polymerases*/metabolism
Promoter Regions, Genetic ; Bacteria/metabolism ; Gram-Negative Bacteria/genetics ; Gram-Negative Bacteria/metabolism ; Bacterial Proteins/genetics ; Bacterial Proteins/metabolism ; Transcription, Genetic ; Sigma Factor/genetics ; Sigma Factor/metabolism ; Gene Expression Regulation, Bacterial
Czasopismo naukowe
Tytuł:
Genomic Redistribution of Metal-Response Transcription Factor-1 (MTF-1) in Cadmium Resistant Cells.
Autorzy:
Wright GM; Department of Pharmacology, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
Black JC; Department of Pharmacology, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
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Źródło:
Cells [Cells] 2023 Mar 21; Vol. 12 (6). Date of Electronic Publication: 2023 Mar 21.
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't
MeSH Terms:
Cadmium*/metabolism
Cadmium*/pharmacology
Cadmium*/toxicity
DNA-Binding Proteins*/genetics
DNA-Binding Proteins*/metabolism
Metals, Heavy*/metabolism
Metals, Heavy*/pharmacology
Metals, Heavy*/toxicity
Transcription Factors*/metabolism
Female ; Humans ; Breast Neoplasms/metabolism ; Cell Line, Tumor ; Genomics ; Promoter Regions, Genetic ; Zinc/metabolism ; Transcription Factor MTF-1
Czasopismo naukowe
Tytuł:
Biophysical and Biochemical Characterization of the Binding of the MarR-like Transcriptional Regulator Saro_0803 to the nov1 Promotor and Its Inhibition by Resveratrol.
Autorzy:
He Z; Department of Pathogen Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China.
Ke Z; Department of Blood Transfusion, Wuhan Children's Hospital, Tongji Medical College, Huazhong University of Science & Technology, Wuhan 430016, China.
Wang W; Medical Subcenter of HUST Analytical & Testing Center, Huazhong University of Science and Technology, Wuhan 430030, China.
Liu Y; Department of Pathogen Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China.
Zhang H; Department of Pathogen Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China.
Li Y; Department of Pathogen Biology, School of Basic Medicine, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China.; Department of Pediatrics, Tongji Hospital, Tongji Medical College, Huazhong University of Science and Technology, Wuhan 430030, China.
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Źródło:
Biomolecules [Biomolecules] 2023 Mar 16; Vol. 13 (3). Date of Electronic Publication: 2023 Mar 16.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Transcription Factors*/genetics
Resveratrol/pharmacology ; Molecular Docking Simulation ; Promoter Regions, Genetic ; Binding Sites
Czasopismo naukowe
Tytuł:
Crucial Abiotic Stress Regulatory Network of NF-Y Transcription Factor in Plants.
Autorzy:
Zhang H; National Engineering Research Center of Tree Breeding and Ecological Remediation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.; State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.
Liu S; National Engineering Research Center of Tree Breeding and Ecological Remediation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.; State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.
Ren T; National Engineering Research Center of Tree Breeding and Ecological Remediation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.; State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.
Niu M; National Engineering Research Center of Tree Breeding and Ecological Remediation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.; State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.
Liu X; National Engineering Research Center of Tree Breeding and Ecological Remediation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.; State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.
Liu C; National Engineering Research Center of Tree Breeding and Ecological Remediation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.; State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.
Wang H; National Engineering Research Center of Tree Breeding and Ecological Remediation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.; State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.
Yin W; National Engineering Research Center of Tree Breeding and Ecological Remediation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.; State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.
Xia X; National Engineering Research Center of Tree Breeding and Ecological Remediation, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.; State Key Laboratory of Tree Genetics and Breeding, College of Biological Sciences and Technology, Beijing Forestry University, Beijing 100083, China.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2023 Feb 23; Vol. 24 (5). Date of Electronic Publication: 2023 Feb 23.
Typ publikacji:
Journal Article; Review
MeSH Terms:
Transcription Factors*/metabolism
Gene Expression Regulation*
Promoter Regions, Genetic ; Stress, Physiological/genetics ; CCAAT-Binding Factor/genetics
Czasopismo naukowe
Tytuł:
Modulation of transcription factor dynamics allows versatile information transmission.
Autorzy:
Givré A; Departamento de Física, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, C1428EGA, Argentina.; Instituto de Física de Buenos Aires (IFIBA), CONICET-UBA, Buenos Aires, C1428EGA, Argentina.
Colman-Lerner A; Departamento de Fisiología, Biología Molecular y Celular, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, C1428EGA, Argentina. .; Instituto de Fisiología, Biología Molecular y Neurociencias (IFIBYNE), CONICET-Universidad de Buenos Aires, Facultad de Ciencias Exactas y Naturales, Buenos Aires, C1428EGA, Argentina. .
Ponce Dawson S; Departamento de Física, Facultad de Ciencias Exactas y Naturales, Universidad de Buenos Aires, Buenos Aires, C1428EGA, Argentina. .; Instituto de Física de Buenos Aires (IFIBA), CONICET-UBA, Buenos Aires, C1428EGA, Argentina. .
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Źródło:
Scientific reports [Sci Rep] 2023 Feb 14; Vol. 13 (1), pp. 2652. Date of Electronic Publication: 2023 Feb 14.
Typ publikacji:
Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:
Transcription Factors*/genetics
Transcription Factors*/metabolism
Gene Expression Regulation*
Promoter Regions, Genetic
Czasopismo naukowe
Tytuł:
Different Fruit-Specific Promoters Drive AtMYB12 Expression to Improve Phenylpropanoid Accumulation in Tomato.
Autorzy:
Ding X; State Key Laboratory of Crop Biology, Shandong Provincial Key Laboratory of Agricultural Microbiology, College of Plant Protection, Shandong Agricultural University, Tai'an 271018, China.
Yin Z; State Key Laboratory of Crop Biology, Shandong Provincial Key Laboratory of Agricultural Microbiology, College of Plant Protection, Shandong Agricultural University, Tai'an 271018, China.
Wang S; Yantai Academy of Agricultural Sciences, Yantai 265500, China.
Liu H; State Key Laboratory of Crop Biology, Shandong Provincial Key Laboratory of Agricultural Microbiology, College of Plant Protection, Shandong Agricultural University, Tai'an 271018, China.
Chu X; State Key Laboratory of Crop Biology, Shandong Provincial Key Laboratory of Agricultural Microbiology, College of Plant Protection, Shandong Agricultural University, Tai'an 271018, China.
Liu J; State Key Laboratory of Crop Biology, Shandong Provincial Key Laboratory of Agricultural Microbiology, College of Plant Protection, Shandong Agricultural University, Tai'an 271018, China.
Zhao H; State Key Laboratory of Crop Biology, Shandong Provincial Key Laboratory of Agricultural Microbiology, College of Plant Protection, Shandong Agricultural University, Tai'an 271018, China.
Wang X; State Key Laboratory of Crop Biology, Shandong Provincial Key Laboratory of Agricultural Microbiology, College of Plant Protection, Shandong Agricultural University, Tai'an 271018, China.
Li Y; State Key Laboratory of Crop Biology, Shandong Provincial Key Laboratory of Agricultural Microbiology, College of Plant Protection, Shandong Agricultural University, Tai'an 271018, China.
Ding X; State Key Laboratory of Crop Biology, Shandong Provincial Key Laboratory of Agricultural Microbiology, College of Plant Protection, Shandong Agricultural University, Tai'an 271018, China.
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Źródło:
Molecules (Basel, Switzerland) [Molecules] 2022 Jan 05; Vol. 27 (1). Date of Electronic Publication: 2022 Jan 05.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Expression Regulation, Plant*
Promoter Regions, Genetic*
Fruit/*genetics
Fruit/*metabolism
Solanum lycopersicum/*physiology
Propanols/*metabolism
Transcription Factors/*genetics
Biosynthetic Pathways ; Chromatography, High Pressure Liquid ; Organ Specificity/genetics ; Plant Proteins/genetics ; Plant Proteins/metabolism
Czasopismo naukowe
Tytuł:
TdIF1-LSD1 Axis Regulates Epithelial-Mesenchymal Transition and Metastasis via Histone Demethylation of E-Cadherin Promoter in Lung Cancer.
Autorzy:
Liu Q; Institute of Immunotherapy, College of Basic Medicine, The First Affiliated Hospital of Nanchang University, Jiangxi Academy of Medical Sciences, Nanchang 330046, China.; Department of Pathology and Laboratory Medicine, University of Western Ontario, London, ON N6A 5A5, Canada.
Xiong J; Department of Preventive Medicine, School of Medicine, Shenzhen University, Shenzhen 518054, China.
Xu D; Institute of Immunotherapy, College of Basic Medicine, The First Affiliated Hospital of Nanchang University, Jiangxi Academy of Medical Sciences, Nanchang 330046, China.
Hao N; Institute of Immunotherapy, College of Basic Medicine, The First Affiliated Hospital of Nanchang University, Jiangxi Academy of Medical Sciences, Nanchang 330046, China.
Zhang Y; Institute of Immunotherapy, College of Basic Medicine, The First Affiliated Hospital of Nanchang University, Jiangxi Academy of Medical Sciences, Nanchang 330046, China.
Sang Y; Institute of Immunotherapy, College of Basic Medicine, The First Affiliated Hospital of Nanchang University, Jiangxi Academy of Medical Sciences, Nanchang 330046, China.
Wang Z; Institute of Immunotherapy, College of Basic Medicine, The First Affiliated Hospital of Nanchang University, Jiangxi Academy of Medical Sciences, Nanchang 330046, China.
Zheng X; Department of Pathology and Laboratory Medicine, University of Western Ontario, London, ON N6A 5A5, Canada.; Department of Surgery, University of Western Ontario, London, ON N6A 5A5, Canada.; Department of Microbiology and Immunology, University of Western Ontario, London, ON N6A 5A5, Canada.; Department of Oncology, University of Western Ontario, London, ON N6A 5A5, Canada.
Min J; London Regional Cancer Program, Matthew Mailing Centre for Translational Transplantation Studies, Lawson Health Research Institute, London, ON N6A 5A5, Canada.
Diao H; London Regional Cancer Program, Matthew Mailing Centre for Translational Transplantation Studies, Lawson Health Research Institute, London, ON N6A 5A5, Canada.
Raphael J; Department of Oncology, University of Western Ontario, London, ON N6A 5A5, Canada.; London Regional Cancer Program, Matthew Mailing Centre for Translational Transplantation Studies, Lawson Health Research Institute, London, ON N6A 5A5, Canada.
Maleki Vareki S; Department of Pathology and Laboratory Medicine, University of Western Ontario, London, ON N6A 5A5, Canada.; Department of Oncology, University of Western Ontario, London, ON N6A 5A5, Canada.; London Regional Cancer Program, Matthew Mailing Centre for Translational Transplantation Studies, Lawson Health Research Institute, London, ON N6A 5A5, Canada.
Koropatnick J; Department of Pathology and Laboratory Medicine, University of Western Ontario, London, ON N6A 5A5, Canada.; Department of Microbiology and Immunology, University of Western Ontario, London, ON N6A 5A5, Canada.; Department of Oncology, University of Western Ontario, London, ON N6A 5A5, Canada.; London Regional Cancer Program, Matthew Mailing Centre for Translational Transplantation Studies, Lawson Health Research Institute, London, ON N6A 5A5, Canada.
Min W; Institute of Immunotherapy, College of Basic Medicine, The First Affiliated Hospital of Nanchang University, Jiangxi Academy of Medical Sciences, Nanchang 330046, China.; Department of Pathology and Laboratory Medicine, University of Western Ontario, London, ON N6A 5A5, Canada.; Department of Surgery, University of Western Ontario, London, ON N6A 5A5, Canada.; Department of Oncology, University of Western Ontario, London, ON N6A 5A5, Canada.; London Regional Cancer Program, Matthew Mailing Centre for Translational Transplantation Studies, Lawson Health Research Institute, London, ON N6A 5A5, Canada.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2021 Dec 27; Vol. 23 (1). Date of Electronic Publication: 2021 Dec 27.
Typ publikacji:
Journal Article
MeSH Terms:
Demethylation*
Promoter Regions, Genetic*
Cadherins/*genetics
DNA-Binding Proteins/*metabolism
Epithelial-Mesenchymal Transition/*genetics
Histone Demethylases/*metabolism
Histones/*metabolism
Lung Neoplasms/*genetics
Transcription Factors/*metabolism
Animals ; Cadherins/metabolism ; Carcinogenesis/pathology ; Cell Line, Tumor ; Cell Movement/genetics ; Down-Regulation/genetics ; Gene Expression Regulation, Neoplastic ; Gene Knockdown Techniques ; Lung Neoplasms/pathology ; Lysine/metabolism ; Methylation ; Mice, Inbred BALB C ; Mice, Nude ; Neoplasm Invasiveness ; Neoplasm Metastasis ; Protein Binding ; Mice
Czasopismo naukowe
Tytuł:
Bmp4 Synexpression Gene, Sizzled, Transcription Is Collectively Modulated by Smad1 and Ventx1.1/Ventx2.1 in Early Xenopus Embryos.
Autorzy:
Rehman ZU; Department of Biochemistry, Institute of Cell Differentiation and Aging, College of Medicine, Hallym University, Chuncheon 24252, Gangwon-Do, Korea.
Tayyaba F; Department of Biochemistry, Institute of Cell Differentiation and Aging, College of Medicine, Hallym University, Chuncheon 24252, Gangwon-Do, Korea.
Lee U; Department of Electrical Engineering, Hallym University, Chuncheon 24252, Gangwon-Do, Korea.
Kim J; Department of Biochemistry, Institute of Cell Differentiation and Aging, College of Medicine, Hallym University, Chuncheon 24252, Gangwon-Do, Korea.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2022 Nov 01; Vol. 23 (21). Date of Electronic Publication: 2022 Nov 01.
Typ publikacji:
Journal Article
MeSH Terms:
Xenopus Proteins*/genetics
Xenopus Proteins*/metabolism
Transcription Factors*/metabolism
Animals ; Xenopus laevis/genetics ; Xenopus laevis/metabolism ; Promoter Regions, Genetic ; Binding Sites ; Bone Morphogenetic Protein 4/genetics ; Bone Morphogenetic Protein 4/metabolism ; Smad1 Protein/genetics ; Smad1 Protein/metabolism
Czasopismo naukowe
Tytuł:
The native cistrome and sequence motif families of the maize ear.
Autorzy:
Savadel SD; Department of Biological Science, Florida State University, Tallahassee, Florida, United States of America.
Hartwig T; Institute for Molecular Physiologie, Heinrich-Heine-Universität, Düsseldorf, Germany.; Independent research groups, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Turpin ZM; Department of Biological Science, Florida State University, Tallahassee, Florida, United States of America.
Vera DL; Department of Biological Science, Florida State University, Tallahassee, Florida, United States of America.
Lung PY; Department of Statistics, Florida State University, Tallahassee, Florida, United States of America.
Sui X; Department of Statistics, Florida State University, Tallahassee, Florida, United States of America.
Blank M; Institute for Molecular Physiologie, Heinrich-Heine-Universität, Düsseldorf, Germany.; Independent research groups, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Frommer WB; Institute for Molecular Physiologie, Heinrich-Heine-Universität, Düsseldorf, Germany.; Independent research groups, Max Planck Institute for Plant Breeding Research, Cologne, Germany.
Dennis JH; Department of Biological Science, Florida State University, Tallahassee, Florida, United States of America.
Zhang J; Department of Statistics, Florida State University, Tallahassee, Florida, United States of America.
Bass HW; Department of Biological Science, Florida State University, Tallahassee, Florida, United States of America.
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Źródło:
PLoS genetics [PLoS Genet] 2021 Aug 12; Vol. 17 (8), pp. e1009689. Date of Electronic Publication: 2021 Aug 12 (Print Publication: 2021).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural; Research Support, Non-U.S. Gov't; Research Support, U.S. Gov't, Non-P.H.S.
MeSH Terms:
Promoter Regions, Genetic*
DNA Footprinting/*methods
Transcription Factors/*metabolism
Zea mays/*genetics
Binding Sites ; Chromatin Immunoprecipitation Sequencing ; High-Throughput Nucleotide Sequencing ; Plant Proteins/genetics ; Plant Proteins/metabolism ; Regulatory Elements, Transcriptional ; Whole Genome Sequencing
Czasopismo naukowe
Tytuł:
Cytosine methylation of the FWA promoter promotes direct in vitro shoot regeneration in Arabidopsis thaliana.
Autorzy:
Dai X; The Key Laboratory of the Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Sciences, Shandong University, Qingdao, 266237, China.
Wang J; The Key Laboratory of the Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Sciences, Shandong University, Qingdao, 266237, China.
Song Y; The Key Laboratory of the Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Sciences, Shandong University, Qingdao, 266237, China.; Present address: Qufu Normal University, Qufu, 273165, China.
Liu Z; The Key Laboratory of the Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Sciences, Shandong University, Qingdao, 266237, China.; Present address: Shandong University of Traditional Chinese Medicine, Jinan, 250355, China.
Xue T; The Key Laboratory of the Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Sciences, Shandong University, Qingdao, 266237, China.; Present address: Huaibei Normal University, Huaibei, 235000, China.
Qiao M; The Key Laboratory of the Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Sciences, Shandong University, Qingdao, 266237, China.
Yu Y; The Key Laboratory of the Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Sciences, Shandong University, Qingdao, 266237, China.; Present address: Qingdao Agricultural University, Qingdao, 266109, China.
Xin W; The Key Laboratory of the Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Sciences, Shandong University, Qingdao, 266237, China.; Present address: Institute of Botany, The Chinese Academy of Sciences, Beijing, 100101, China.
Xiang F; The Key Laboratory of the Plant Development and Environmental Adaptation Biology, Ministry of Education, School of Life Sciences, Shandong University, Qingdao, 266237, China.
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Źródło:
Journal of integrative plant biology [J Integr Plant Biol] 2021 Aug; Vol. 63 (8), pp. 1491-1504.
Typ publikacji:
Journal Article
MeSH Terms:
Promoter Regions, Genetic*
Arabidopsis/*genetics
Arabidopsis/*growth & development
Arabidopsis Proteins/*genetics
Cytosine/*metabolism
DNA Methylation/*genetics
Homeodomain Proteins/*genetics
Plant Shoots/*physiology
Regeneration/*physiology
Transcription Factors/*genetics
Arabidopsis Proteins/metabolism ; Homeodomain Proteins/metabolism ; Models, Biological ; Mutation/genetics ; Plant Shoots/cytology ; Plant Shoots/ultrastructure ; Protein Binding ; Transcription Factors/metabolism ; Transcription, Genetic
Czasopismo naukowe
Tytuł:
Translatome and transcriptome co-profiling reveals a role of TPRXs in human zygotic genome activation.
Autorzy:
Zou Z; Center for Stem Cell Biology and Regenerative Medicine, MOE Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, China.; Tsinghua-Peking Center for Life Sciences, Tsinghua University, Beijing 100084, China.; Academy for Advanced Interdisciplinary Studies, Peking University, Beijing 100871, China.
Zhang C; Center for Reproductive Medicine, Shandong University, Jinan, Shandong 250012, China.; Key Laboratory of Reproductive Endocrinology of Ministry of Education, Shandong University, Jinan, Shandong 250012, China.; Shandong Key Laboratory of Reproductive Medicine, Shandong Provincial Hospital Affiliated to Shandong First Medical University, Jinan, Shandong 250012, China.; Shandong Provincial Clinical Research Center for Reproductive Health, Jinan, Shandong 250012, China.; National Research Center for Assisted Reproductive Technology and Reproductive Genetics, Shandong University, Jinan, Shandong 250012, China.
Wang Q; Center for Stem Cell Biology and Regenerative Medicine, MOE Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, China.; Tsinghua-Peking Center for Life Sciences, Tsinghua University, Beijing 100084, China.
Hou Z; Center for Reproductive Medicine, Shandong University, Jinan, Shandong 250012, China.; Key Laboratory of Reproductive Endocrinology of Ministry of Education, Shandong University, Jinan, Shandong 250012, China.; Shandong Key Laboratory of Reproductive Medicine, Shandong Provincial Hospital Affiliated to Shandong First Medical University, Jinan, Shandong 250012, China.; Shandong Provincial Clinical Research Center for Reproductive Health, Jinan, Shandong 250012, China.; National Research Center for Assisted Reproductive Technology and Reproductive Genetics, Shandong University, Jinan, Shandong 250012, China.
Xiong Z; Center for Stem Cell Biology and Regenerative Medicine, MOE Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, China.; Peking University-Tsinghua University-National Institute of Biological Sciences Joint Graduate Program, School of Life Sciences, Tsinghua University, Beijing 100084, China.
Kong F; Center for Stem Cell Biology and Regenerative Medicine, MOE Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, China.; Tsinghua-Peking Center for Life Sciences, Tsinghua University, Beijing 100084, China.
Wang Q; Center for Stem Cell Biology and Regenerative Medicine, MOE Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, China.; Tsinghua-Peking Center for Life Sciences, Tsinghua University, Beijing 100084, China.
Song J; Center for Reproductive Medicine, Shandong University, Jinan, Shandong 250012, China.; Key Laboratory of Reproductive Endocrinology of Ministry of Education, Shandong University, Jinan, Shandong 250012, China.; Shandong Key Laboratory of Reproductive Medicine, Shandong Provincial Hospital Affiliated to Shandong First Medical University, Jinan, Shandong 250012, China.; Shandong Provincial Clinical Research Center for Reproductive Health, Jinan, Shandong 250012, China.; National Research Center for Assisted Reproductive Technology and Reproductive Genetics, Shandong University, Jinan, Shandong 250012, China.
Liu B; Center for Reproductive Medicine, Shandong University, Jinan, Shandong 250012, China.; Key Laboratory of Reproductive Endocrinology of Ministry of Education, Shandong University, Jinan, Shandong 250012, China.; Shandong Key Laboratory of Reproductive Medicine, Shandong Provincial Hospital Affiliated to Shandong First Medical University, Jinan, Shandong 250012, China.; Shandong Provincial Clinical Research Center for Reproductive Health, Jinan, Shandong 250012, China.; National Research Center for Assisted Reproductive Technology and Reproductive Genetics, Shandong University, Jinan, Shandong 250012, China.
Liu B; Center for Stem Cell Biology and Regenerative Medicine, MOE Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, China.; Tsinghua-Peking Center for Life Sciences, Tsinghua University, Beijing 100084, China.
Wang L; Center for Stem Cell Biology and Regenerative Medicine, MOE Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, China.; Tsinghua-Peking Center for Life Sciences, Tsinghua University, Beijing 100084, China.
Lai F; Center for Stem Cell Biology and Regenerative Medicine, MOE Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, China.; Tsinghua-Peking Center for Life Sciences, Tsinghua University, Beijing 100084, China.
Fan Q; Center for Stem Cell Biology and Regenerative Medicine, MOE Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, China.; Tsinghua-Peking Center for Life Sciences, Tsinghua University, Beijing 100084, China.
Tao W; Center for Reproductive Medicine, Shandong University, Jinan, Shandong 250012, China.; Key Laboratory of Reproductive Endocrinology of Ministry of Education, Shandong University, Jinan, Shandong 250012, China.; Shandong Key Laboratory of Reproductive Medicine, Shandong Provincial Hospital Affiliated to Shandong First Medical University, Jinan, Shandong 250012, China.; Shandong Provincial Clinical Research Center for Reproductive Health, Jinan, Shandong 250012, China.; National Research Center for Assisted Reproductive Technology and Reproductive Genetics, Shandong University, Jinan, Shandong 250012, China.
Zhao S; Center for Reproductive Medicine, Shandong University, Jinan, Shandong 250012, China.; Key Laboratory of Reproductive Endocrinology of Ministry of Education, Shandong University, Jinan, Shandong 250012, China.; Shandong Key Laboratory of Reproductive Medicine, Shandong Provincial Hospital Affiliated to Shandong First Medical University, Jinan, Shandong 250012, China.; Shandong Provincial Clinical Research Center for Reproductive Health, Jinan, Shandong 250012, China.; National Research Center for Assisted Reproductive Technology and Reproductive Genetics, Shandong University, Jinan, Shandong 250012, China.
Ma X; Center for Reproductive Medicine, Shandong University, Jinan, Shandong 250012, China.; Key Laboratory of Reproductive Endocrinology of Ministry of Education, Shandong University, Jinan, Shandong 250012, China.; Shandong Key Laboratory of Reproductive Medicine, Shandong Provincial Hospital Affiliated to Shandong First Medical University, Jinan, Shandong 250012, China.; Shandong Provincial Clinical Research Center for Reproductive Health, Jinan, Shandong 250012, China.; National Research Center for Assisted Reproductive Technology and Reproductive Genetics, Shandong University, Jinan, Shandong 250012, China.
Li M; Center for Reproductive Medicine, Shandong University, Jinan, Shandong 250012, China.; Key Laboratory of Reproductive Endocrinology of Ministry of Education, Shandong University, Jinan, Shandong 250012, China.; Shandong Key Laboratory of Reproductive Medicine, Shandong Provincial Hospital Affiliated to Shandong First Medical University, Jinan, Shandong 250012, China.; Shandong Provincial Clinical Research Center for Reproductive Health, Jinan, Shandong 250012, China.; National Research Center for Assisted Reproductive Technology and Reproductive Genetics, Shandong University, Jinan, Shandong 250012, China.
Wu K; Center for Reproductive Medicine, Shandong University, Jinan, Shandong 250012, China.; Key Laboratory of Reproductive Endocrinology of Ministry of Education, Shandong University, Jinan, Shandong 250012, China.; Shandong Key Laboratory of Reproductive Medicine, Shandong Provincial Hospital Affiliated to Shandong First Medical University, Jinan, Shandong 250012, China.; Shandong Provincial Clinical Research Center for Reproductive Health, Jinan, Shandong 250012, China.; National Research Center for Assisted Reproductive Technology and Reproductive Genetics, Shandong University, Jinan, Shandong 250012, China.
Zhao H; Center for Reproductive Medicine, Shandong University, Jinan, Shandong 250012, China.; Key Laboratory of Reproductive Endocrinology of Ministry of Education, Shandong University, Jinan, Shandong 250012, China.; Shandong Key Laboratory of Reproductive Medicine, Shandong Provincial Hospital Affiliated to Shandong First Medical University, Jinan, Shandong 250012, China.; Shandong Provincial Clinical Research Center for Reproductive Health, Jinan, Shandong 250012, China.; National Research Center for Assisted Reproductive Technology and Reproductive Genetics, Shandong University, Jinan, Shandong 250012, China.; Research Unit of Gametogenesis and Health of ART-Offspring, Chinese Academy of Medical Sciences, China.
Chen ZJ; Center for Reproductive Medicine, Shandong University, Jinan, Shandong 250012, China.; Key Laboratory of Reproductive Endocrinology of Ministry of Education, Shandong University, Jinan, Shandong 250012, China.; Shandong Key Laboratory of Reproductive Medicine, Shandong Provincial Hospital Affiliated to Shandong First Medical University, Jinan, Shandong 250012, China.; Shandong Provincial Clinical Research Center for Reproductive Health, Jinan, Shandong 250012, China.; National Research Center for Assisted Reproductive Technology and Reproductive Genetics, Shandong University, Jinan, Shandong 250012, China.; Research Unit of Gametogenesis and Health of ART-Offspring, Chinese Academy of Medical Sciences, China.; Shanghai Key Laboratory for Assisted Reproduction and Reproductive Genetics, Shanghai 200135, China.; Center for Reproductive Medicine, Ren Ji Hospital, School of Medicine, Shanghai Jiao Tong University, Shanghai 200135, China.
Xie W; Center for Stem Cell Biology and Regenerative Medicine, MOE Key Laboratory of Bioinformatics, School of Life Sciences, Tsinghua University, Beijing 100084, China.; Tsinghua-Peking Center for Life Sciences, Tsinghua University, Beijing 100084, China.
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Źródło:
Science (New York, N.Y.) [Science] 2022 Oct 07; Vol. 378 (6615), pp. abo7923. Date of Electronic Publication: 2022 Oct 07.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Expression Regulation, Developmental*
Transcription Factors*/genetics
Transcription Factors*/metabolism
Transcriptome*
Zygote*/metabolism
3' Untranslated Regions ; Embryonic Development/genetics ; Humans
Czasopismo naukowe
Tytuł:
Overexpression of PgCBF3 and PgCBF7 Transcription Factors from Pomegranate Enhances Freezing Tolerance in Arabidopsis under the Promoter Activity Positively Regulated by PgICE1.
Autorzy:
Wang L; College of Horticulture, Henan Agricultural University, Zhengzhou 450002, China.
Wang S; College of Horticulture, Henan Agricultural University, Zhengzhou 450002, China.
Tong R; College of Horticulture, Henan Agricultural University, Zhengzhou 450002, China.
Wang S; College of Horticulture, Henan Agricultural University, Zhengzhou 450002, China.
Yao J; College of Horticulture, Henan Agricultural University, Zhengzhou 450002, China.
Jiao J; College of Horticulture, Henan Agricultural University, Zhengzhou 450002, China.
Wan R; College of Horticulture, Henan Agricultural University, Zhengzhou 450002, China.
Wang M; College of Horticulture, Henan Agricultural University, Zhengzhou 450002, China.
Shi J; College of Horticulture, Henan Agricultural University, Zhengzhou 450002, China.
Zheng X; College of Horticulture, Henan Agricultural University, Zhengzhou 450002, China.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2022 Aug 21; Vol. 23 (16). Date of Electronic Publication: 2022 Aug 21.
Typ publikacji:
Journal Article
MeSH Terms:
Arabidopsis*/genetics
Arabidopsis*/physiology
Freezing*
Plant Proteins*/genetics
Plant Proteins*/physiology
Pomegranate*/genetics
Transcription Factors*/genetics
Transcription Factors*/physiology
Cold Temperature ; Gene Expression Regulation, Plant ; Plants, Genetically Modified/physiology ; Promoter Regions, Genetic ; Saccharomyces cerevisiae/metabolism
Czasopismo naukowe
Tytuł:
Differential Impact of Random GC Tetrad Binding and Chromatin Events on Transcriptional Inhibition by Olivomycin A.
Autorzy:
Isagulieva AK; Institute of Gene Biology, Russian Academy of Sciences, 34/5 Vavilov Street, 119991 Moscow, Russia.; Gause Institute of New Antibiotics, 11 B. Pirogovskaya Street, 119021 Moscow, Russia.
Kaluzhny DN; Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 32 Vavilov Street, 119991 Moscow, Russia.
Beniaminov AD; Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 32 Vavilov Street, 119991 Moscow, Russia.
Soshnikova NV; Institute of Gene Biology, Russian Academy of Sciences, 34/5 Vavilov Street, 119991 Moscow, Russia.; Engelhardt Institute of Molecular Biology, Russian Academy of Sciences, 32 Vavilov Street, 119991 Moscow, Russia.
Shtil AA; Blokhin National Medical Research Center of Oncology, 24 Kashirskoye Shosse, 115478 Moscow, Russia.
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Źródło:
International journal of molecular sciences [Int J Mol Sci] 2022 Aug 09; Vol. 23 (16). Date of Electronic Publication: 2022 Aug 09.
Typ publikacji:
Journal Article
MeSH Terms:
Chromatin*/genetics
Transcription Factors*/metabolism
Binding Sites ; DNA/genetics ; Olivomycins ; Promoter Regions, Genetic ; RNA Polymerase II/genetics ; Transcription, Genetic
Czasopismo naukowe
Tytuł:
Definition of the Binding Architecture to a Target Promoter of HP1043, the Essential Master Regulator of Helicobacter pylori .
Autorzy:
Zannoni A; Department of Pharmacy and Biotechnology (FaBiT), University of Bologna, 40126 Bologna, Italy.
Pelliciari S; Department of Pharmacy and Biotechnology (FaBiT), University of Bologna, 40126 Bologna, Italy.
Musiani F; Department of Pharmacy and Biotechnology (FaBiT), University of Bologna, 40126 Bologna, Italy.
Chiappori F; Istituto di Tecnologie Biomediche-Consiglio Nazionale delle Ricerche (ITB-CNR), 20054 Segrate, Italy.
Roncarati D; Department of Pharmacy and Biotechnology (FaBiT), University of Bologna, 40126 Bologna, Italy.
Scarlato V; Department of Pharmacy and Biotechnology (FaBiT), University of Bologna, 40126 Bologna, Italy.
Pokaż więcej
Źródło:
International journal of molecular sciences [Int J Mol Sci] 2021 Jul 22; Vol. 22 (15). Date of Electronic Publication: 2021 Jul 22.
Typ publikacji:
Journal Article
MeSH Terms:
Gene Expression Regulation, Bacterial*
Promoter Regions, Genetic*
Helicobacter pylori/*metabolism
Transcription Factors/*metabolism
Helicobacter pylori/genetics ; Helicobacter pylori/growth & development ; Humans ; Molecular Dynamics Simulation ; Phosphorylation ; Protein Conformation ; Transcription Factors/chemistry ; Transcription Factors/genetics
Czasopismo naukowe
Tytuł:
A combinatorial cis-regulatory logic restricts color-sensing Rhodopsins to specific photoreceptor subsets in Drosophila.
Autorzy:
Poupault C; Department of Biology, Integrated Sciences Complex, University of Massachusetts Boston, Boston, Massachusetts, United States of America.
Choi D; Department of Biology, Integrated Sciences Complex, University of Massachusetts Boston, Boston, Massachusetts, United States of America.
Lam-Kamath K; Department of Biology, Integrated Sciences Complex, University of Massachusetts Boston, Boston, Massachusetts, United States of America.
Dewett D; Department of Biology, Integrated Sciences Complex, University of Massachusetts Boston, Boston, Massachusetts, United States of America.
Razzaq A; Department of Biology, Integrated Sciences Complex, University of Massachusetts Boston, Boston, Massachusetts, United States of America.
Bunker J; Department of Biology, Integrated Sciences Complex, University of Massachusetts Boston, Boston, Massachusetts, United States of America.
Perry A; Department of Biology, Integrated Sciences Complex, University of Massachusetts Boston, Boston, Massachusetts, United States of America.
Cho I; Department of Biology, Integrated Sciences Complex, University of Massachusetts Boston, Boston, Massachusetts, United States of America.
Rister J; Department of Biology, Integrated Sciences Complex, University of Massachusetts Boston, Boston, Massachusetts, United States of America.
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Źródło:
PLoS genetics [PLoS Genet] 2021 Jun 23; Vol. 17 (6), pp. e1009613. Date of Electronic Publication: 2021 Jun 23 (Print Publication: 2021).
Typ publikacji:
Journal Article; Research Support, N.I.H., Extramural
MeSH Terms:
Promoter Regions, Genetic*
Color Vision/*genetics
Drosophila Proteins/*genetics
Drosophila melanogaster/*genetics
Photoreceptor Cells, Invertebrate/*metabolism
Rhodopsin/*genetics
Transcription Factors/*genetics
Animals ; Base Sequence ; Drosophila Proteins/metabolism ; Drosophila melanogaster/metabolism ; Evolution, Molecular ; Female ; Gene Expression Regulation ; Genes, Reporter ; Green Fluorescent Proteins/genetics ; Green Fluorescent Proteins/metabolism ; Photoreceptor Cells, Invertebrate/classification ; Photoreceptor Cells, Invertebrate/cytology ; Protein Binding ; Protein Isoforms/genetics ; Protein Isoforms/metabolism ; Rhodopsin/metabolism ; Transcription Factors/metabolism
Czasopismo naukowe
Tytuł:
DeepD2V: A Novel Deep Learning-Based Framework for Predicting Transcription Factor Binding Sites from Combined DNA Sequence.
Autorzy:
Deng L; School of Computer Science and Engineering, Central South University, Changsha 410075, China.
Wu H; School of Computer Science and Engineering, Central South University, Changsha 410075, China.
Liu X; School of Computer Science and Technology, Nanjing Tech University, Nanjing 211816, China.
Liu H; School of Computer Science and Technology, Nanjing Tech University, Nanjing 211816, China.
Pokaż więcej
Źródło:
International journal of molecular sciences [Int J Mol Sci] 2021 May 24; Vol. 22 (11). Date of Electronic Publication: 2021 May 24.
Typ publikacji:
Journal Article
MeSH Terms:
Deep Learning*
Promoter Regions, Genetic*
Computational Biology/*methods
DNA/*metabolism
Transcription Factors/*metabolism
Binding Sites ; Cell Line ; DNA-Binding Proteins/metabolism ; Humans ; K562 Cells ; Software
Czasopismo naukowe

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