Wszystkie pola: "Bacterial Typing Techniques" - OpacWWW

Skocz do pozycji: 1.

Tytuł:: Culturomics Approach to Identify Diabetic Foot Infection Bacteria.
Autorzy:: Złoch M; Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń, Wileńska 4 Str., 87-100 Toruń, Poland.
Maślak E; Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń, Wileńska 4 Str., 87-100 Toruń, Poland.
Kupczyk W; Department of General, Gastroenterological and Oncological Surgery, Faculty of Medicine, Collegium Medicum, Nicolaus Copernicus University in Toruń, Gagarina 7, 87-100 Torun, Poland.
Jackowski M; Department of General, Gastroenterological and Oncological Surgery, Faculty of Medicine, Collegium Medicum, Nicolaus Copernicus University in Toruń, Gagarina 7, 87-100 Torun, Poland.
Pomastowski P; Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń, Wileńska 4 Str., 87-100 Toruń, Poland.
Buszewski B; Centre for Modern Interdisciplinary Technologies, Nicolaus Copernicus University in Toruń, Wileńska 4 Str., 87-100 Toruń, Poland.; Chair of Environmental Chemistry and Bioanalytics, Faculty of Chemistry, Nicolaus Copernicus University in Toruń, Gagarina 7 Str., 87-100 Toruń, Poland.; Pokaż więcej
Źródło:: International journal of molecular sciences [Int J Mol Sci] 2021 Sep 03; Vol. 22 (17). Date of Electronic Publication: 2021 Sep 03.
Typ publikacji:: Journal Article
MeSH Terms:: Bacteria*/classification
Bacteria*/growth & development
Bacteria*/isolation & purification
Bacterial Typing Techniques*
Diabetic Foot/*microbiology
Female ; Humans ; Male

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Skocz do pozycji: 2.

Tytuł:: Rapid high-resolution melting genotyping scheme for Escherichia coli based on MLST derived single nucleotide polymorphisms.
Autorzy:: Bezdicek M; Department of Internal Medicine, Hematology and Oncology, University Hospital Brno, Brno, Czech Republic.; Department of Internal Medicine, Hematology and Oncology, Masaryk University, Brno, Czech Republic.
Nykrynova M; Department of Biomedical Engineering, Faculty of Electrical Engineering and Communication, Brno University of Technology, Brno, Czech Republic.
Sedlar K; Department of Biomedical Engineering, Faculty of Electrical Engineering and Communication, Brno University of Technology, Brno, Czech Republic.
Kralova S; Department of Experimental Biology, Czech Collection of Microorganisms, Faculty of Science, Masaryk University, Brno, Czech Republic.
Hanslikova J; Department of Internal Medicine, Hematology and Oncology, University Hospital Brno, Brno, Czech Republic.
Komprdova A; Department of Internal Medicine, Hematology and Oncology, University Hospital Brno, Brno, Czech Republic.
Skutkova H; Department of Biomedical Engineering, Faculty of Electrical Engineering and Communication, Brno University of Technology, Brno, Czech Republic.
Kocmanova I; Department of Clinical Microbiology and Immunology, University Hospital Brno, Brno, Czech Republic.
Mayer J; Department of Internal Medicine, Hematology and Oncology, University Hospital Brno, Brno, Czech Republic.
Lengerova M; Department of Internal Medicine, Hematology and Oncology, University Hospital Brno, Brno, Czech Republic. .; Department of Internal Medicine, Hematology and Oncology, Masaryk University, Brno, Czech Republic. .; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2021 Aug 16; Vol. 11 (1), pp. 16572. Date of Electronic Publication: 2021 Aug 16.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Bacterial Typing Techniques*
Genes, Bacterial*
Genotyping Techniques*
Polymorphism, Single Nucleotide*
DNA, Bacterial/*genetics
Escherichia coli/*genetics
Multilocus Sequence Typing/*methods
Base Composition ; Computer Simulation ; Czech Republic/epidemiology ; DNA Primers ; DNA, Bacterial/chemistry ; Disease Outbreaks ; Escherichia coli/classification ; Escherichia coli/isolation & purification ; Escherichia coli Infections/microbiology ; Genome, Bacterial ; Nucleic Acid Denaturation ; Polymerase Chain Reaction/methods ; Population Surveillance ; Repetitive Sequences, Nucleic Acid ; Whole Genome Sequencing

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Skocz do pozycji: 3.

Tytuł:: Detection of carbapenemase producing enterobacteria using an ion sensitive field effect transistor sensor.
Autorzy:: Kotsakis SD; Laboratory of Bacteriology, Hellenic Pasteur Institute, Vas. Sofias 127, 115-21, Athens, Greece. .
Miliotis G; Laboratory of Bacteriology, Hellenic Pasteur Institute, Vas. Sofias 127, 115-21, Athens, Greece.
Tzelepi E; Laboratory of Bacteriology, Hellenic Pasteur Institute, Vas. Sofias 127, 115-21, Athens, Greece.
Tzouvelekis LS; Laboratory of Bacteriology, Hellenic Pasteur Institute, Vas. Sofias 127, 115-21, Athens, Greece.; Microbiology Department, School of Medicine, National and Kapodistrian University of Athens, Mikras Asias 75, 115-26, Athens, Greece.
Miriagou V; Laboratory of Bacteriology, Hellenic Pasteur Institute, Vas. Sofias 127, 115-21, Athens, Greece.; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2021 Jun 08; Vol. 11 (1), pp. 12061. Date of Electronic Publication: 2021 Jun 08.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Bacterial Typing Techniques*
Enterobacteriaceae*/classification
Enterobacteriaceae*/enzymology
Transistors, Electronic*
Bacterial Proteins/*analysis
beta-Lactamases/*analysis
Electrochemical Techniques ; Humans

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Skocz do pozycji: 4.

Tytuł:: Comparison of Autof ms1000 and Bruker Biotyper MALDI-TOF MS Platforms for Routine Identification of Clinical Microorganisms.
Autorzy:: Park JH; Department of Laboratory Medicine, Seoul National University College of Medicine, 03080 Seoul, Republic of Korea.; Department of Laboratory Medicine, Seoul National University Hospital, 03080 Seoul, Republic of Korea.
Jang Y; Biomedical Research Institute, Seoul National University Hospital, 03080 Seoul, Republic of Korea.
Yoon I; Department of Laboratory Medicine, Seoul National University Hospital, 03080 Seoul, Republic of Korea.
Kim TS; Department of Laboratory Medicine, Seoul National University College of Medicine, 03080 Seoul, Republic of Korea.; Department of Laboratory Medicine, Seoul National University Hospital, 03080 Seoul, Republic of Korea.
Park H; Department of Laboratory Medicine, Seoul National University College of Medicine, 03080 Seoul, Republic of Korea.; Department of Laboratory Medicine, Seoul National University Boramae Medical Center, 07061 Seoul, Republic of Korea.; Pokaż więcej
Źródło:: BioMed research international [Biomed Res Int] 2021 Mar 03; Vol. 2021, pp. 6667623. Date of Electronic Publication: 2021 Mar 03 (Print Publication: 2021).
Typ publikacji:: Journal Article
MeSH Terms:: Bacteria*/classification
Bacteria*/genetics
Bacterial Typing Techniques*/instrumentation
Bacterial Typing Techniques*/methods
RNA, Bacterial*/analysis
RNA, Bacterial*/genetics
RNA, Ribosomal, 16S*/analysis
RNA, Ribosomal, 16S*/genetics
Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization*
Humans

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Skocz do pozycji: 5.

Tytuł:: A hospital-based study on etiology and prognosis of bacterial meningitis in adults.
Autorzy:: Sunwoo JS; Department of Neurosurgery, Seoul National University Hospital, Seoul, South Korea.
Shin HR; Department of Neurology, Dankook University Hospital, Cheonan, South Korea.
Lee HS; Department of Neurology, Comprehensive Epilepsy Center, Biomedical Research Institute, Seoul National University Hospital, 101, Daehak-ro, Jongno-gu, Seoul, 03080, South Korea.
Moon J; Department of Neurology, Comprehensive Epilepsy Center, Biomedical Research Institute, Seoul National University Hospital, 101, Daehak-ro, Jongno-gu, Seoul, 03080, South Korea.; Rare Disease Center, Seoul National University Hospital, Seoul, South Korea.
Lee ST; Department of Neurology, Comprehensive Epilepsy Center, Biomedical Research Institute, Seoul National University Hospital, 101, Daehak-ro, Jongno-gu, Seoul, 03080, South Korea.
Jung KH; Department of Neurology, Comprehensive Epilepsy Center, Biomedical Research Institute, Seoul National University Hospital, 101, Daehak-ro, Jongno-gu, Seoul, 03080, South Korea.
Park KI; Department of Neurology, Seoul National University Hospital Healthcare System Gangnam Center, Seoul, South Korea.
Jung KY; Department of Neurology, Comprehensive Epilepsy Center, Biomedical Research Institute, Seoul National University Hospital, 101, Daehak-ro, Jongno-gu, Seoul, 03080, South Korea.
Kim M; Department of Neurology, Comprehensive Epilepsy Center, Biomedical Research Institute, Seoul National University Hospital, 101, Daehak-ro, Jongno-gu, Seoul, 03080, South Korea.; Protein Metabolism and Neuroscience Dementia Medical Research Center, Seoul National University College of Medicine, Seoul, South Korea.
Lee SK; Department of Neurology, Comprehensive Epilepsy Center, Biomedical Research Institute, Seoul National University Hospital, 101, Daehak-ro, Jongno-gu, Seoul, 03080, South Korea.
Chu K; Department of Neurology, Comprehensive Epilepsy Center, Biomedical Research Institute, Seoul National University Hospital, 101, Daehak-ro, Jongno-gu, Seoul, 03080, South Korea. .; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2021 Mar 16; Vol. 11 (1), pp. 6028. Date of Electronic Publication: 2021 Mar 16.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Bacteria*/classification
Bacteria*/isolation & purification
Bacterial Typing Techniques*
Meningitis, Bacterial*/etiology
Meningitis, Bacterial*/microbiology
Meningitis, Bacterial*/mortality
Meningitis, Bacterial*/therapy
Aged ; Disease-Free Survival ; Female ; Humans ; Male ; Middle Aged ; Retrospective Studies ; Survival Rate

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Skocz do pozycji: 6.

Tytuł:: Full pathogen characterisation: species identification including the detection of virulence factors and antibiotic resistance genes via multiplex DNA-assays.
Autorzy:: Wolff N; Molecular Diagnostics, AIT Austrian Institute of Technology, Giefinggasse 4, 1210, Vienna, Austria. .
Hendling M; Molecular Diagnostics, AIT Austrian Institute of Technology, Giefinggasse 4, 1210, Vienna, Austria.
Schroeder F; Ekorefugium, Slunj, Croatia.
Schönthaler S; Molecular Diagnostics, AIT Austrian Institute of Technology, Giefinggasse 4, 1210, Vienna, Austria.
Geiss AF; University of Natural Resources and Life Sciences, Vienna, Austria.
Bedenic B; Department of Microbiology, School of Medicine, University of Zagreb, Zagreb, Croatia.
Barišić I; Molecular Diagnostics, AIT Austrian Institute of Technology, Giefinggasse 4, 1210, Vienna, Austria.; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2021 Mar 16; Vol. 11 (1), pp. 6001. Date of Electronic Publication: 2021 Mar 16.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Bacteria*/classification
Bacteria*/genetics
Bacteria*/pathogenicity
Bacterial Typing Techniques*
Oligonucleotide Array Sequence Analysis*
Sepsis*/genetics
Sepsis*/microbiology
Drug Resistance, Bacterial/*genetics
Virulence Factors/*genetics
Humans

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Skocz do pozycji: 7.

Tytuł:: Could LASCA-imaging of GB-speckles be applied for a high discrimination and typing of pathogenic bacteria?
Autorzy:: Ulianova O; Department of Medical Physics, Saratov State University, Saratov, Russia.
Ulyanov S; Department of Medical Physics, Saratov State University, Saratov, Russia.; Federal Research Center for Virology and Microbiology, Branch in Saratov, Saratov, Russia.
Zaytsev S; Federal Research Center for Virology and Microbiology, Branch in Saratov, Saratov, Russia.
Saltykov Y; Federal Research Center for Virology and Microbiology, Branch in Saratov, Saratov, Russia.
Ulyanov A; Department of Medical Physics, Saratov State University, Saratov, Russia.
Feodorova V; Federal Research Center for Virology and Microbiology, Branch in Saratov, Saratov, Russia.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2021 Jan 28; Vol. 16 (1), pp. e0245657. Date of Electronic Publication: 2021 Jan 28 (Print Publication: 2021).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Bacterial Typing Techniques*
Chlamydia trachomatis*/classification
Chlamydia trachomatis*/genetics
Chlamydia trachomatis*/metabolism
Diagnostic Imaging*
Genes, Bacterial*
Lasers*
DNA, Bacterial/*genetics

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Skocz do pozycji: 8.

Tytuł:: Contrasting genetic diversity and structure among Malagasy Ralstonia pseudosolanacearum phylotype I populations inferred from an optimized Multilocus Variable Number of Tandem Repeat Analysis scheme.
Autorzy:: Rasoamanana H; UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Université de La Réunion, Saint-Pierre, Réunion, France.
Ravelomanantsoa S; Centre National de la Recherche Appliquée au Développement Rural FOFIFA, Antananarivo, Madagascar.
Yahiaoui N; UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Université de La Réunion, Saint-Pierre, Réunion, France.
Dianzinga N; UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Université de La Réunion, Saint-Pierre, Réunion, France.
Rébert E; UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Université de La Réunion, Saint-Pierre, Réunion, France.
Gauche MM; UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Université de La Réunion, Saint-Pierre, Réunion, France.
Pecrix Y; Centre de Coopération Internationale en Recherche Agronomique pour le Développement, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint-Pierre, Réunion, France.
Costet L; Centre de Coopération Internationale en Recherche Agronomique pour le Développement, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint-Pierre, Réunion, France.
Rieux A; Centre de Coopération Internationale en Recherche Agronomique pour le Développement, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint-Pierre, Réunion, France.
Prior P; Institut National de Recherche pour l'Agriculture, l'Alimentation et l'Environnement, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint-Pierre, Réunion, France.
Robène I; Centre de Coopération Internationale en Recherche Agronomique pour le Développement, UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Saint-Pierre, Réunion, France.
Cellier G; Anses - Plant Health Laboratory - Tropical Pests and Diseases Unit, Saint-Pierre, Réunion, France.
Guérin F; UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Université de La Réunion, Saint-Pierre, Réunion, France.
Poussier S; UMR Peuplements Végétaux et Bioagresseurs en Milieu Tropical, Université de La Réunion, Saint-Pierre, Réunion, France.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2020 Dec 08; Vol. 15 (12), pp. e0242846. Date of Electronic Publication: 2020 Dec 08 (Print Publication: 2020).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Bacterial Typing Techniques*
Genetic Variation*
Multilocus Sequence Typing*
Phylogeny*
Ralstonia/*classification
Ralstonia/*genetics
Tandem Repeat Sequences/*genetics
Genotype
SCR Organism:: Ralstonia pseudosolanacearum

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Skocz do pozycji: 9.

Tytuł:: Evaluation of the Autof MS1000 mass spectrometer in the identification of clinical isolates.
Autorzy:: Ma Q; Department of Clinical Laboratory, Henan Provincial People's Hospital, Henan University People's Hospital, Zhengzhou, 450003, Henan, China.
Zhang Q; Department of Clinical Laboratory, Henan Provincial People's Hospital, Henan University People's Hospital, Zhengzhou, 450003, Henan, China.
Yuan Y; Department of Clinical Laboratory, Henan Provincial People's Hospital, Henan University People's Hospital, Zhengzhou, 450003, Henan, China.
Yan W; Department of Clinical Laboratory, Henan Provincial People's Hospital, Henan University People's Hospital, Zhengzhou, 450003, Henan, China.
Wang S; Department of Clinical Laboratory, Henan Provincial People's Hospital, Henan University People's Hospital, Zhengzhou, 450003, Henan, China.
Xu J; Department of Clinical Laboratory, Henan Provincial People's Hospital, Henan University People's Hospital, Zhengzhou, 450003, Henan, China.
Zhang J; Department of Clinical Laboratory, Henan Provincial People's Hospital, Henan University People's Hospital, Zhengzhou, 450003, Henan, China.
Wang Y; Henan Provincial People's Hospital, Henan University People's Hospital, and People's Hospital of Henan University, Weiwu Road 5, 450003, Zhengzhou, Henan, People's Republic of China. .
Li Y; Department of Clinical Laboratory, Henan Provincial People's Hospital, Henan University People's Hospital, Zhengzhou, 450003, Henan, China. .; Pokaż więcej
Źródło:: BMC microbiology [BMC Microbiol] 2020 Oct 20; Vol. 20 (1), pp. 318. Date of Electronic Publication: 2020 Oct 20.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Spectrometry, Mass, Matrix-Assisted Laser Desorption-Ionization*
Bacteria/*genetics
Bacterial Typing Techniques/*instrumentation
Bacteria/classification ; Bacteria/isolation & purification ; Bacterial Typing Techniques/methods ; Humans ; RNA, Bacterial/analysis ; RNA, Bacterial/genetics ; RNA, Ribosomal, 16S/analysis ; RNA, Ribosomal, 16S/genetics

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Skocz do pozycji: 10.

Tytuł:: Development and comparative validation of genomic-driven PCR-based assays to detect Xanthomonas citri pv. citri in citrus plants.
Autorzy:: Robène I; CIRAD, UMR PVBMT, Saint-Pierre, Reunion Island, France. .
Maillot-Lebon V; CIRAD, UMR PVBMT, Saint-Pierre, Reunion Island, France.
Chabirand A; Unit for Tropical Pests and Diseases, Plant Health Laboratory (LSV), French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Saint-Pierre, Reunion Island, France.
Moreau A; Unit for Tropical Pests and Diseases, Plant Health Laboratory (LSV), French Agency for Food, Environmental and Occupational Health & Safety (ANSES), Saint-Pierre, Reunion Island, France.
Becker N; Institut de Systématique, Evolution, Biodiversité (ISYEB), Muséum National d'Histoire Naturelle, Sorbonne Université, EPHE, Université des Antilles, CNRS, Paris, France.
Moumène A; Université de La Réunion, UMR PVBMT, Saint-Pierre, Reunion Island, France.
Rieux A; CIRAD, UMR PVBMT, Saint-Pierre, Reunion Island, France.
Campos P; CIRAD, UMR PVBMT, Saint-Pierre, Reunion Island, France.; Institut de Systématique, Evolution, Biodiversité (ISYEB), Muséum National d'Histoire Naturelle, Sorbonne Université, EPHE, Université des Antilles, CNRS, Paris, France.
Gagnevin L; CIRAD-UMR IPME, Montpellier, France.
Gaudeul M; Herbier national (P), Muséum National d'Histoire Naturelle, Paris, France.
Baider C; Ministry of Agro Industry and Food Security, Mauritius Herbarium, R.E. Vaughan Building (MSIRI compound) Agricultural Services, Réduit, Mauritius.
Chiroleu F; CIRAD, UMR PVBMT, Saint-Pierre, Reunion Island, France.
Pruvost O; CIRAD, UMR PVBMT, Saint-Pierre, Reunion Island, France.; Pokaż więcej
Źródło:: BMC microbiology [BMC Microbiol] 2020 Oct 01; Vol. 20 (1), pp. 296. Date of Electronic Publication: 2020 Oct 01.
Typ publikacji:: Comparative Study; Journal Article; Research Support, Non-U.S. Gov't; Validation Study
MeSH Terms:: Bacterial Typing Techniques*
Bacterial Proteins/*genetics
Citrus/*microbiology
Membrane Proteins/*genetics
Real-Time Polymerase Chain Reaction/*methods
Xanthomonas/*genetics
Benchmarking ; DNA, Bacterial/genetics ; Gene Expression ; Humans ; Plant Diseases/microbiology ; ROC Curve ; Real-Time Polymerase Chain Reaction/standards ; Reproducibility of Results ; Xanthomonas/isolation & purification
SCR Organism:: Xanthomonas citri

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Skocz do pozycji: 11.

Tytuł:: New Arctic Bacterial Isolates with Relevant Enzymatic Potential.
Autorzy:: Piegza M; Department of Biotechnology and Food Microbiology, Wrocław University of Environmental and Life Sciences, Chelmonskiego 37, 51-630 Wroclaw, Poland.
Łaba W; Department of Biotechnology and Food Microbiology, Wrocław University of Environmental and Life Sciences, Chelmonskiego 37, 51-630 Wroclaw, Poland.
Kačániová M; Department of Fruit Sciences, Viticulture and Enology, Faculty of Horticulture and Landscape Engineering, Slovak University of Agriculture, Tr. A. Hlinku 2, 94976 Nitra, Slovakia.; Department of Bioenergetics, Food Analysis and Microbiology, Institute of Food Technology and Nutrition, University of Rzeszow, Cwiklinskiej 1, 35-601 Rzeszow, Poland.; Pokaż więcej
Źródło:: Molecules (Basel, Switzerland) [Molecules] 2020 Aug 28; Vol. 25 (17). Date of Electronic Publication: 2020 Aug 28.
Typ publikacji:: Journal Article
MeSH Terms:: Bacterial Typing Techniques*
Bacteria/*classification
Bacteria/*enzymology
Arctic Regions ; Bacteria/isolation & purification ; Bacterial Proteins/metabolism ; Enzyme Activation ; Hydrolysis

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Skocz do pozycji: 12.

Tytuł:: A Machine Learning-Based Raman Spectroscopic Assay for the Identification of Burkholderia mallei and Related Species.
Autorzy:: Moawad AA; Friedrich-Loeffler-Institut, Institute of Bacterial Infections and Zoonoses, Naumburger Str. 96a, 07743 Jena, Germany.; Animal Health Research Institute, Agricultural Research Center, 12618 Dokki-Giza, Egypt.
Silge A; Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University, Helmholtzweg 4, 07743 Jena, Germany.; InfectoGnostics Research Campus Jena, Center of Applied Research, Philosophenweg 7, 07743 Jena, Germany.
Bocklitz T; Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University, Helmholtzweg 4, 07743 Jena, Germany.; Leibniz-Institute of Photonic Technology, Member of the Leibniz Research Alliance - Leibniz Health Technologies, Albert-Einstein-Str. 9, 07745 Jena, Germany.
Fischer K; Friedrich-Loeffler-Institut, Institute of Bacterial Infections and Zoonoses, Naumburger Str. 96a, 07743 Jena, Germany.
Rösch P; Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University, Helmholtzweg 4, 07743 Jena, Germany.
Roesler U; Institute for Animal Hygiene and Environmental Health, Free University Berlin, Robert-von Ostertag-Str. 7-13, 14163 Berlin, Germany.
Elschner MC; Friedrich-Loeffler-Institut, Institute of Bacterial Infections and Zoonoses, Naumburger Str. 96a, 07743 Jena, Germany.
Popp J; Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University, Helmholtzweg 4, 07743 Jena, Germany.; InfectoGnostics Research Campus Jena, Center of Applied Research, Philosophenweg 7, 07743 Jena, Germany.; Leibniz-Institute of Photonic Technology, Member of the Leibniz Research Alliance - Leibniz Health Technologies, Albert-Einstein-Str. 9, 07745 Jena, Germany.
Neubauer H; Friedrich-Loeffler-Institut, Institute of Bacterial Infections and Zoonoses, Naumburger Str. 96a, 07743 Jena, Germany.; Pokaż więcej
Źródło:: Molecules (Basel, Switzerland) [Molecules] 2019 Dec 10; Vol. 24 (24). Date of Electronic Publication: 2019 Dec 10.
Typ publikacji:: Journal Article
MeSH Terms:: Bacterial Typing Techniques*/methods
Machine Learning*
Spectrum Analysis, Raman*/methods
Burkholderia mallei/*classification
Cluster Analysis ; Humans ; Workflow

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Skocz do pozycji: 13.

Tytuł:: A multilocus sequence typing scheme of Pseudomonas putida for clinical and environmental isolates.
Autorzy:: Ogura K; Advanced Health Care Science Research Unit, Institute for Frontier Science Initiative, Kanazawa University, 5-11-80 Kodatsuno, Kanazawa-shi, Ishikawa, 920-0942, Japan. .
Shimada K; Pathogenic Microbe Laboratory, Research Institute, National Center for Global Health and Medicine, 1-21-1 Toyama, Shinjuku-ku, Tokyo, 162-8655, Japan.
Miyoshi-Akiyama T; Pathogenic Microbe Laboratory, Research Institute, National Center for Global Health and Medicine, 1-21-1 Toyama, Shinjuku-ku, Tokyo, 162-8655, Japan.; Pokaż więcej
Źródło:: Scientific reports [Sci Rep] 2019 Sep 27; Vol. 9 (1), pp. 13980. Date of Electronic Publication: 2019 Sep 27.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Bacterial Typing Techniques*
Genetic Loci*
Genetic Variation*
Multilocus Sequence Typing*
Pseudomonas putida/*genetics
Polymorphism, Single Nucleotide ; Pseudomonas putida/isolation & purification

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Skocz do pozycji: 14.

Tytuł:: Genomic Analysis of Chilean Strains of Campylobacter jejuni from Human Faeces.
Autorzy:: Levican A; Tecnología Médica, Facultad de Ciencias, Pontificia Universidad Católica de Valparaíso, Avenida Universidad 330, 2373223 Valparaíso, Chile.
Ramos-Tapia I; Center for Bioinformatics and Integrative Biology (CBIB), Facultad de Ciencias de la Vida, Universidad Andres Bello, Avenida Republica 330, Santiago, Chile.
Briceño I; Laboratorio Clínico, Hospital Naval Almirante Nef, Viña del Mar, Chile.
Guerra F; Laboratorio Clínico, Hospital Naval Almirante Nef, Viña del Mar, Chile.
Mena B; Laboratorio Clínico, Hospital Naval Almirante Nef, Viña del Mar, Chile.
Varela C; Laboratorio Clínico, Clínica Alemana de Santiago, Facultad de Medicina Clínica Alemana, Universidad del Desarrollo, Santiago, Chile.
Porte L; Laboratorio Clínico, Clínica Alemana de Santiago, Facultad de Medicina Clínica Alemana, Universidad del Desarrollo, Santiago, Chile.; Pokaż więcej
Źródło:: BioMed research international [Biomed Res Int] 2019 Jul 08; Vol. 2019, pp. 1902732. Date of Electronic Publication: 2019 Jul 08 (Print Publication: 2019).
Typ publikacji:: Journal Article
MeSH Terms:: Bacterial Typing Techniques*
Campylobacter Infections*/epidemiology
Campylobacter Infections*/genetics
Campylobacter jejuni*/classification
Campylobacter jejuni*/genetics
Campylobacter jejuni*/isolation & purification
Campylobacter jejuni*/pathogenicity
Drug Resistance, Bacterial*
Genome, Bacterial*
Multilocus Sequence Typing*
Virulence Factors/*genetics
Adult ; Aged ; Child ; Chile/epidemiology ; Feces ; Female ; Humans ; Male ; Middle Aged

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Skocz do pozycji: 15.

Tytuł:: Agr typing of Staphylococcus aureus species isolated from clinical samples in training hospitals of Isfahan and Shahrekord.
Autorzy:: Javdan S; Cellular and Molecular Research Center, Basic Health Sciences Institute, Shahrekord University of Medical Sciences, Shahrekord, Iran.
Narimani T; Department of Microbiology, Isfahan University of Medical Sciences, Isfahan, Iran.
Shahini Shams Abadi M; Department of Bacteriology & Virology, School of Medicine, Shiraz University of Medical Sciences, Shiraz, Iran.
Gholipour A; Cellular and Molecular Research Center, Basic Health Sciences Institute, Shahrekord University of Medical Sciences, Shahrekord, Iran. gholipour_.; Department of Microbiology and Immunology, Cellular and Molecular Research Center, Shahrekord University of Medical Sciences, Shahrekord, Iran. gholipour_.; Pokaż więcej
Źródło:: BMC research notes [BMC Res Notes] 2019 Jun 27; Vol. 12 (1), pp. 363. Date of Electronic Publication: 2019 Jun 27.
Typ publikacji:: Journal Article
MeSH Terms:: Bacterial Typing Techniques*
Genes, Bacterial*
Hospitals*
Staphylococcus aureus/*genetics
Staphylococcus aureus/*isolation & purification
Drug Resistance, Microbial ; Gene Frequency ; Iran ; Microbial Sensitivity Tests ; Species Specificity

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Skocz do pozycji: 16.

Tytuł:: Genotypic determination of resistance and heteroresistance to clarithromycin in Helicobacter pylori isolates from antrum and corpus of Colombian symptomatic patients.
Autorzy:: Arévalo-Jaimes BV; Molecular Diagnostics and Bioinformatics Laboratory, Department of Biological Sciences, Los Andes University, Cra 1 # 18A- 10 Office J211, Zip Code, 111711, Bogotá, Colombia.
Rojas-Rengifo DF; Molecular Diagnostics and Bioinformatics Laboratory, Department of Biological Sciences, Los Andes University, Cra 1 # 18A- 10 Office J211, Zip Code, 111711, Bogotá, Colombia.
Jaramillo CA; Molecular Diagnostics and Bioinformatics Laboratory, Department of Biological Sciences, Los Andes University, Cra 1 # 18A- 10 Office J211, Zip Code, 111711, Bogotá, Colombia.
de Molano BM; Gastroenterology Department, University Hospital Foundation Santa Fe de Bogotá, Bogotá, Colombia.
Vera-Chamorro JF; Gastroenterology Department, University Hospital Foundation Santa Fe de Bogotá, Bogotá, Colombia.
Del Pilar Delgado M; Molecular Diagnostics and Bioinformatics Laboratory, Department of Biological Sciences, Los Andes University, Cra 1 # 18A- 10 Office J211, Zip Code, 111711, Bogotá, Colombia. .; Pokaż więcej
Źródło:: BMC infectious diseases [BMC Infect Dis] 2019 Jun 21; Vol. 19 (1), pp. 546. Date of Electronic Publication: 2019 Jun 21.
Typ publikacji:: Journal Article
MeSH Terms:: Bacterial Typing Techniques*
Helicobacter pylori*/drug effects
Helicobacter pylori*/genetics
Helicobacter pylori*/isolation & purification
Clarithromycin/*therapeutic use
Drug Resistance, Bacterial/*genetics
Helicobacter Infections/*drug therapy
Helicobacter Infections/*microbiology
Adolescent ; Adult ; Aged ; Aged, 80 and over ; Anti-Bacterial Agents/therapeutic use ; Clarithromycin/pharmacology ; Colombia/epidemiology ; Female ; Genotype ; Genotyping Techniques ; Helicobacter Infections/epidemiology ; Helicobacter Infections/pathology ; Humans ; Male ; Microbial Sensitivity Tests ; Middle Aged ; Mutation ; Polymerase Chain Reaction/methods ; Prevalence ; Pyloric Antrum/microbiology ; Pyloric Antrum/pathology ; Stomach/microbiology ; Stomach/pathology ; Young Adult

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Skocz do pozycji: 17.

Tytuł:: Development of a real-time PCR method for the genoserotyping of Salmonella Paratyphi B variant Java.
Autorzy:: Gand M; Sciensano, Infectious Diseases in Humans, Bacterial Diseases, Rue Engeland 642, 1180, Brussels, Belgium.; Department of Information Technology, IDLab, imec, Ghent University, 9052, Ghent, Belgium.
Mattheus W; Sciensano, Infectious Diseases in Humans, Bacterial Diseases, Rue Engeland 642, 1180, Brussels, Belgium. .
Saltykova A; Department of Information Technology, IDLab, imec, Ghent University, 9052, Ghent, Belgium.; Sciensano, Transversal Activities in Applied Genomics, 1050, Brussels, Belgium.
Roosens N; Sciensano, Transversal Activities in Applied Genomics, 1050, Brussels, Belgium.
Dierick K; Sciensano, Infectious Diseases in Humans, Food Pathogen, 1050, Brussels, Belgium.
Marchal K; Department of Information Technology, IDLab, imec, Ghent University, 9052, Ghent, Belgium.; Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052, Ghent, Belgium.
De Keersmaecker SCJ; Sciensano, Transversal Activities in Applied Genomics, 1050, Brussels, Belgium.
Bertrand S; Sciensano, 1050, Brussels, Belgium.; Pokaż więcej
Źródło:: Applied microbiology and biotechnology [Appl Microbiol Biotechnol] 2019 Jun; Vol. 103 (12), pp. 4987-4996. Date of Electronic Publication: 2019 May 06.
Typ publikacji:: Journal Article
MeSH Terms:: Bacterial Typing Techniques*
Genotyping Techniques*
Real-Time Polymerase Chain Reaction/*methods
Salmonella paratyphi B/*classification
Anti-Bacterial Agents/pharmacology ; Drug Resistance, Multiple, Bacterial ; Fermentation ; Genetic Variation ; Humans ; Indonesia ; Microbial Sensitivity Tests ; Reproducibility of Results ; Salmonella paratyphi B/drug effects ; Tartrates/metabolism ; Whole Genome Sequencing

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Skocz do pozycji: 18.

Tytuł:: Novel virulence, antibiotic resistance and toxin gene-specific PCR-based assays for rapid pathogenicity assessment of Arcobacter faecis and Arcobacter lanthieri.
Autorzy:: Zambri M; Ottawa Research and Development Centre (ORDC), Agriculture and Agri-Food Canada, 960 Carling Ave., Ottawa, Ontario, K1A 0C6, Canada.; Department of Biology, McMaster University, Hamilton, Ontario, L8S 4L8, Canada.
Cloutier M; Ottawa Research and Development Centre (ORDC), Agriculture and Agri-Food Canada, 960 Carling Ave., Ottawa, Ontario, K1A 0C6, Canada.
Adam Z; Ottawa Research and Development Centre (ORDC), Agriculture and Agri-Food Canada, 960 Carling Ave., Ottawa, Ontario, K1A 0C6, Canada.; School of Information Technology and Engineering, University of Ottawa, Ottawa, Ontario, K1N 6N5, Canada.
Lapen DR; Ottawa Research and Development Centre (ORDC), Agriculture and Agri-Food Canada, 960 Carling Ave., Ottawa, Ontario, K1A 0C6, Canada.
Wilkes G; Ottawa Research and Development Centre (ORDC), Agriculture and Agri-Food Canada, 960 Carling Ave., Ottawa, Ontario, K1A 0C6, Canada.
Sunohara M; Ottawa Research and Development Centre (ORDC), Agriculture and Agri-Food Canada, 960 Carling Ave., Ottawa, Ontario, K1A 0C6, Canada.
Topp E; London Research and Development Centre (LRDC), Agriculture and Agri-Food Canada, London, Ontario, N5V 4T3, Canada.
Talbot G; Sherbrooke Research and Development Centre (SRDC), Agriculture and Agri-Food Canada, Sherbrooke, Quebec, J1M 0C8, Canada.
Khan IUH; Ottawa Research and Development Centre (ORDC), Agriculture and Agri-Food Canada, 960 Carling Ave., Ottawa, Ontario, K1A 0C6, Canada. .; Pokaż więcej
Źródło:: BMC microbiology [BMC Microbiol] 2019 Jan 11; Vol. 19 (1), pp. 11. Date of Electronic Publication: 2019 Jan 11.
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't; Validation Study
MeSH Terms:: Arcobacter*/drug effects
Arcobacter*/genetics
Arcobacter*/pathogenicity
Polymerase Chain Reaction*/standards
Bacterial Toxins/*genetics
Bacterial Typing Techniques/*methods
Drug Resistance, Microbial/*genetics
Gram-Negative Bacterial Infections/*microbiology
Virulence/*genetics
Animals ; Bacterial Typing Techniques/standards ; Genes, Bacterial/genetics ; Gram-Negative Bacterial Infections/diagnosis ; Humans ; Multiplex Polymerase Chain Reaction/standards ; Sensitivity and Specificity

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Skocz do pozycji: 19.

Tytuł:: Proteotyping bacteria: Characterization, differentiation and identification of pneumococcus and other species within the Mitis Group of the genus Streptococcus by tandem mass spectrometry proteomics.
Autorzy:: Karlsson R; Department of Infectious Diseases, Institute of Biomedicine, Sahlgrenska Academy of the University of Gothenburg, Gothenburg, Sweden.; Nanoxis Consulting AB, Gothenburg, Sweden.; Centre for Antibiotic Resistance Research (CARe), University of Gothenburg, Gothenburg, Sweden.
Gonzales-Siles L; Department of Infectious Diseases, Institute of Biomedicine, Sahlgrenska Academy of the University of Gothenburg, Gothenburg, Sweden.; Centre for Antibiotic Resistance Research (CARe), University of Gothenburg, Gothenburg, Sweden.
Gomila M; Microbiology, Department of Biology, University of the Balearic Islands, Palma de Mallorca, Spain.
Busquets A; Microbiology, Department of Biology, University of the Balearic Islands, Palma de Mallorca, Spain.
Salvà-Serra F; Department of Infectious Diseases, Institute of Biomedicine, Sahlgrenska Academy of the University of Gothenburg, Gothenburg, Sweden.; Centre for Antibiotic Resistance Research (CARe), University of Gothenburg, Gothenburg, Sweden.; Microbiology, Department of Biology, University of the Balearic Islands, Palma de Mallorca, Spain.; Culture Collection University of Gothenburg (CCUG), Sahlgrenska Academy of the University of Gothenburg, Gothenburg, Sweden.
Jaén-Luchoro D; Department of Infectious Diseases, Institute of Biomedicine, Sahlgrenska Academy of the University of Gothenburg, Gothenburg, Sweden.; Centre for Antibiotic Resistance Research (CARe), University of Gothenburg, Gothenburg, Sweden.; Culture Collection University of Gothenburg (CCUG), Sahlgrenska Academy of the University of Gothenburg, Gothenburg, Sweden.
Jakobsson HE; Department of Infectious Diseases, Institute of Biomedicine, Sahlgrenska Academy of the University of Gothenburg, Gothenburg, Sweden.; Centre for Antibiotic Resistance Research (CARe), University of Gothenburg, Gothenburg, Sweden.
Karlsson A; Nanoxis Consulting AB, Gothenburg, Sweden.
Boulund F; Centre for Antibiotic Resistance Research (CARe), University of Gothenburg, Gothenburg, Sweden.; Department of Mathematical Sciences, Chalmers University of Technology, Gothenburg, Sweden.
Kristiansson E; Centre for Antibiotic Resistance Research (CARe), University of Gothenburg, Gothenburg, Sweden.; Department of Mathematical Sciences, Chalmers University of Technology, Gothenburg, Sweden.
Moore ERB; Department of Infectious Diseases, Institute of Biomedicine, Sahlgrenska Academy of the University of Gothenburg, Gothenburg, Sweden.; Centre for Antibiotic Resistance Research (CARe), University of Gothenburg, Gothenburg, Sweden.; Culture Collection University of Gothenburg (CCUG), Sahlgrenska Academy of the University of Gothenburg, Gothenburg, Sweden.; Pokaż więcej
Źródło:: PloS one [PLoS One] 2018 Dec 10; Vol. 13 (12), pp. e0208804. Date of Electronic Publication: 2018 Dec 10 (Print Publication: 2018).
Typ publikacji:: Journal Article; Research Support, Non-U.S. Gov't
MeSH Terms:: Bacterial Typing Techniques*
Proteomics*
Tandem Mass Spectrometry*
Bacterial Proteins/*metabolism
Proteome/*metabolism
Streptococcus pneumoniae/*classification
Streptococcus pneumoniae/*metabolism

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Skocz do pozycji: 20.

Tytuł:: Developing Inclusivity and Exclusivity Panels for Testing Diagnostic and Detection Tools Targeting Burkholderia pseudomallei , the Causative Agent of Melioidosis.
Autorzy:: Williamson CHD; Northern Arizona University, The Pathogen & Microbiome Institute, Flagstaff, AZ 86011-4073.
Wagner DM; Northern Arizona University, The Pathogen & Microbiome Institute, Flagstaff, AZ 86011-4073.
Keim P; Northern Arizona University, The Pathogen & Microbiome Institute, Flagstaff, AZ 86011-4073.
Sahl JW; Northern Arizona University, The Pathogen & Microbiome Institute, Flagstaff, AZ 86011-4073.; Pokaż więcej
Źródło:: Journal of AOAC International [J AOAC Int] 2018 Nov 01; Vol. 101 (6), pp. 1920-1926. Date of Electronic Publication: 2018 Apr 20.
Typ publikacji:: Journal Article; Review; Video-Audio Media
MeSH Terms:: Bacterial Typing Techniques/*methods
Burkholderia pseudomallei/*isolation & purification
Genotyping Techniques/*methods
Melioidosis/*diagnosis
Bacterial Typing Techniques/standards ; Burkholderia mallei/genetics ; Burkholderia mallei/isolation & purification ; Burkholderia pseudomallei/genetics ; Genotyping Techniques/standards ; Glanders/diagnosis ; Glanders/microbiology ; Humans ; Limit of Detection ; Melioidosis/microbiology

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